Wall clock time and date at job start Tue Mar 31 2020 19:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47262 * 2 1 4 4 C 1.53006 * 109.47003 * 240.00513 * 2 1 3 5 5 N 1.46495 * 109.47043 * 185.00284 * 4 2 1 6 6 C 1.46510 * 119.99708 * 269.99352 * 5 4 2 7 7 C 1.36932 * 120.00561 * 89.99810 * 5 4 2 8 8 H 1.07998 * 119.99881 * 22.28201 * 7 5 4 9 9 C 1.38810 * 120.00147 * 202.28878 * 7 5 4 10 10 N 1.31621 * 120.00083 * 11.47064 * 9 7 5 11 11 Si 1.86802 * 120.00069 * 191.47438 * 9 7 5 12 12 H 1.48493 * 109.47097 * 59.99594 * 11 9 7 13 13 H 1.48504 * 109.47340 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47006 * 299.99503 * 11 9 7 15 15 N 1.46494 * 109.47359 * 120.00204 * 2 1 3 16 16 C 1.34776 * 119.99943 * 275.00050 * 15 2 1 17 17 O 1.21605 * 120.00306 * 359.97438 * 16 15 2 18 18 C 1.47301 * 119.99870 * 179.97438 * 16 15 2 19 19 C 1.34222 * 124.78982 * 180.29017 * 18 16 15 20 20 C 1.39565 * 115.52907 * 180.22473 * 19 18 16 21 21 C 1.47753 * 129.59681 * 179.81797 * 20 19 18 22 22 C 1.34060 * 119.56236 * 179.69921 * 21 20 19 23 23 N 1.36551 * 121.42245 * 0.02562 * 22 21 20 24 24 H 0.97005 * 119.16476 * 179.97438 * 23 22 21 25 25 C 1.34311 * 121.68007 * 0.02562 * 23 22 21 26 26 O 1.21950 * 119.69370 * 179.97438 * 25 23 22 27 27 C 1.39388 * 112.90510 * 359.52648 * 20 19 18 28 28 S 1.75561 * 124.79091 * 0.02562 * 18 16 15 29 29 H 1.08995 * 109.46825 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46732 * 299.99808 * 1 2 3 31 31 H 1.08997 * 109.47405 * 59.99514 * 1 2 3 32 32 H 1.09003 * 109.46722 * 304.99671 * 4 2 1 33 33 H 1.08995 * 109.47554 * 64.99389 * 4 2 1 34 34 H 1.08997 * 109.46809 * 94.22464 * 6 5 4 35 35 H 1.08994 * 109.46825 * 214.22548 * 6 5 4 36 36 H 1.09000 * 109.47121 * 334.22709 * 6 5 4 37 37 H 0.97006 * 119.99834 * 180.02562 * 10 9 7 38 38 H 0.96999 * 119.99848 * 95.00072 * 15 2 1 39 39 H 1.07993 * 122.23380 * 0.05769 * 19 18 16 40 40 H 1.08001 * 120.21936 * 359.67715 * 21 20 19 41 41 H 1.07996 * 119.28647 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5000 -0.8264 -1.1907 6 6 4.3343 0.2341 -1.7614 7 6 4.0850 -1.9158 -0.6025 8 1 3.5335 -2.8396 -0.5081 9 6 5.3866 -1.8329 -0.1275 10 7 5.9795 -0.6615 -0.0337 11 14 6.2969 -3.3836 0.3785 12 1 6.3973 -4.3006 -0.7852 13 1 7.6604 -3.0270 0.8463 14 1 5.5566 -4.0562 1.4762 15 7 2.0184 -0.6906 1.1961 16 6 2.1471 -0.0183 2.3571 17 8 1.8583 1.1617 2.4117 18 6 2.6376 -0.7129 3.5599 19 6 2.7971 -0.1403 4.7633 20 6 3.2799 -0.9789 5.7691 21 6 3.5708 -0.6789 7.1863 22 6 4.0289 -1.6512 7.9876 23 7 4.2347 -2.9186 7.5231 24 1 4.5675 -3.5969 8.1316 25 6 3.9891 -3.2500 6.2449 26 8 4.1862 -4.3931 5.8686 27 6 3.5008 -2.2828 5.3288 28 16 3.0900 -2.4080 3.6233 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.6054 -1.7197 -1.2953 33 1 1.7516 -0.1583 -2.1370 34 1 4.6022 0.9456 -0.9804 35 1 5.2403 -0.2028 -2.1813 36 1 3.7810 0.7485 -2.5472 37 1 6.8893 -0.6036 0.2979 38 1 2.2491 -1.6318 1.1525 39 1 2.5696 0.9003 4.9408 40 1 3.4158 0.3171 7.5740 41 1 4.2405 -1.4269 9.0226 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322194168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:37 Heat of formation + Delta-G solvation = 4.513869 kcal Electronic energy + Delta-G solvation = -26791.610719 eV Core-core repulsion = 22992.272498 eV Total energy + Delta-G solvation = -3799.338222 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.98999 -39.36080 -37.48346 -36.47052 -35.85189 -34.02863 -31.74096 -31.08833 -30.20850 -29.49607 -26.21086 -25.64340 -25.48909 -23.75362 -22.17298 -21.27191 -20.26477 -19.88382 -19.05767 -18.06232 -16.83535 -16.60473 -16.56365 -15.63101 -15.52575 -15.46382 -14.88607 -14.57881 -14.35839 -13.91322 -13.74448 -13.39659 -13.18758 -12.90961 -12.84940 -12.52963 -12.21416 -12.08415 -11.99064 -11.87559 -11.42866 -11.30065 -10.84605 -10.76735 -10.68998 -10.43236 -10.31099 -10.28252 -10.07494 -9.84544 -9.58613 -9.39626 -8.85543 -8.57645 -8.41042 -7.75103 -6.80631 -5.76120 -3.22603 0.18645 1.35520 1.37586 1.95820 2.20054 2.95148 3.37266 3.39458 3.43765 3.46719 3.53322 3.73746 4.36148 4.46741 4.57725 4.89971 4.93598 5.21989 5.32015 5.47634 5.49483 5.62374 5.69935 5.81600 5.91047 5.94513 6.08003 6.13515 6.19865 6.20241 6.41525 6.47496 6.56002 6.72924 6.80983 6.84033 7.10920 7.37535 7.69039 7.78374 7.85292 8.07653 8.34421 8.68625 9.18678 9.82246 10.31833 11.27664 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011824 B = 0.004877 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.581975 B = 5739.784133 C = 7216.458481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.117 3.883 3 H 0.081 0.919 4 C 0.141 3.859 5 N -0.598 5.598 6 C 0.164 3.836 7 C -0.263 4.263 8 H 0.066 0.934 9 C 0.014 3.986 10 N -0.897 5.897 11 Si 0.884 3.116 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.273 1.273 15 N -0.677 5.677 16 C 0.587 3.413 17 O -0.541 6.541 18 C -0.197 4.197 19 C -0.082 4.082 20 C -0.006 4.006 21 C -0.169 4.169 22 C 0.099 3.901 23 N -0.621 5.621 24 H 0.417 0.583 25 C 0.571 3.429 26 O -0.541 6.541 27 C -0.288 4.288 28 S 0.277 5.723 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.028 0.972 35 H 0.045 0.955 36 H -0.004 1.004 37 H 0.253 0.747 38 H 0.403 0.597 39 H 0.157 0.843 40 H 0.150 0.850 41 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.563 -0.005 13.525 15.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.010 3.990 3 H 0.099 0.901 4 C 0.012 3.988 5 N -0.321 5.321 6 C 0.019 3.981 7 C -0.393 4.393 8 H 0.084 0.916 9 C -0.186 4.186 10 N -0.540 5.540 11 Si 0.713 3.287 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.199 1.199 15 N -0.326 5.326 16 C 0.371 3.629 17 O -0.421 6.421 18 C -0.319 4.319 19 C -0.114 4.114 20 C -0.023 4.023 21 C -0.194 4.194 22 C -0.025 4.025 23 N -0.258 5.258 24 H 0.254 0.746 25 C 0.366 3.634 26 O -0.421 6.421 27 C -0.409 4.409 28 S 0.549 5.451 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.046 0.954 35 H 0.063 0.937 36 H 0.015 0.985 37 H 0.064 0.936 38 H 0.239 0.761 39 H 0.174 0.826 40 H 0.168 0.832 41 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -7.491 -0.943 12.016 14.191 hybrid contribution 1.092 -0.185 1.760 2.079 sum -6.399 -1.128 13.776 15.231 Atomic orbital electron populations 1.22166 0.96528 1.01481 1.01784 1.21960 0.92025 0.98532 0.86507 0.90103 1.21213 0.86073 0.97991 0.93488 1.43888 0.98835 1.22663 1.66667 1.20804 0.92999 0.90428 0.93843 1.19018 0.97271 0.89466 1.33524 0.91631 1.24945 0.98536 0.96055 0.99052 1.70054 1.13431 1.21618 1.48927 0.86642 0.79749 0.83342 0.78963 1.20904 1.21527 1.19905 1.45657 1.64291 1.14195 1.08450 1.16939 0.77915 0.86065 0.82013 1.90740 1.51753 1.14773 1.84825 1.24592 1.08739 0.99536 0.99046 1.19948 0.99961 1.01593 0.89943 1.19250 0.97383 0.91184 0.94486 1.21332 1.07596 0.99968 0.90542 1.21375 0.97973 0.83596 0.99516 1.42974 1.59492 1.11802 1.11539 0.74563 1.15771 0.78722 0.87546 0.81376 1.90990 1.53931 1.20458 1.76752 1.24240 1.17152 0.98590 1.00937 1.84527 1.57772 1.03499 0.99321 0.92858 0.92812 0.91949 0.93230 0.92645 0.95376 0.93650 0.98540 0.93626 0.76110 0.82562 0.83207 0.81768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.48 37.16 0.35 -2.01 16 2 C 0.12 2.16 2.88 -67.93 -0.20 1.96 16 3 H 0.08 1.69 7.58 -51.93 -0.39 1.30 16 4 C 0.14 2.67 5.36 -4.04 -0.02 2.64 16 5 N -0.60 -14.12 2.82 -181.12 -0.51 -14.63 16 6 C 0.16 3.95 9.01 59.85 0.54 4.49 16 7 C -0.26 -6.68 8.02 -15.06 -0.12 -6.80 16 8 H 0.07 1.61 7.84 -52.49 -0.41 1.20 16 9 C 0.01 0.37 5.13 -17.43 -0.09 0.28 16 10 N -0.90 -25.44 10.59 55.49 0.59 -24.85 16 11 Si 0.88 21.52 29.57 -169.99 -5.03 16.50 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 14 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 15 N -0.68 -13.25 4.48 -54.92 -0.25 -13.50 16 16 C 0.59 11.88 7.77 -12.58 -0.10 11.78 16 17 O -0.54 -12.01 16.41 5.27 0.09 -11.92 16 18 C -0.20 -3.57 6.36 -37.31 -0.24 -3.81 16 19 C -0.08 -1.30 9.82 -40.50 -0.40 -1.69 16 20 C -0.01 -0.08 6.08 -105.09 -0.64 -0.72 16 21 C -0.17 -1.64 10.29 -37.16 -0.38 -2.02 16 22 C 0.10 0.76 11.11 -16.92 -0.19 0.57 16 23 N -0.62 -6.35 5.23 -14.85 -0.08 -6.43 16 24 H 0.42 3.03 8.87 -40.82 -0.36 2.67 16 25 C 0.57 8.93 7.71 -15.07 -0.12 8.81 16 26 O -0.54 -10.29 17.89 4.96 0.09 -10.20 16 27 C -0.29 -4.74 6.48 -37.76 -0.24 -4.98 16 28 S 0.28 4.97 22.27 -107.50 -2.39 2.58 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.89 8.03 -51.93 -0.42 0.47 16 33 H 0.06 0.95 7.86 -51.93 -0.41 0.54 16 34 H 0.03 0.75 7.42 -51.93 -0.39 0.36 16 35 H 0.04 1.18 7.19 -51.93 -0.37 0.80 16 36 H 0.00 -0.08 7.84 -51.93 -0.41 -0.49 16 37 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.40 7.89 6.47 -40.82 -0.26 7.63 16 39 H 0.16 2.24 7.98 -52.49 -0.42 1.82 16 40 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.17 0.45 8.06 -52.49 -0.42 0.03 16 LS Contribution 362.01 15.07 5.46 5.46 Total: -1.00 -34.16 362.01 -8.96 -43.12 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -5.09 Total: 5.37 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: -1.84 Total: 8.50 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -0.25 Total: -59.40 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: 0.18 Total: -22.12 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.50 kcal Atomic # 16 Polarization: 4.97 SS G_CDS: -2.39 Total: 2.58 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.16 -8.96 -43.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322194168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.637 kcal (2) G-P(sol) polarization free energy of solvation -34.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds