Wall clock time and date at job start Tue Mar 31 2020 19:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47262 * 2 1 4 4 C 1.53006 * 109.47003 * 240.00513 * 2 1 3 5 5 N 1.46495 * 109.47043 * 185.00284 * 4 2 1 6 6 C 1.46510 * 119.99708 * 269.99352 * 5 4 2 7 7 C 1.36932 * 120.00561 * 89.99810 * 5 4 2 8 8 H 1.07998 * 119.99881 * 22.28201 * 7 5 4 9 9 C 1.38810 * 120.00147 * 202.28878 * 7 5 4 10 10 N 1.31621 * 120.00083 * 11.47064 * 9 7 5 11 11 Si 1.86802 * 120.00069 * 191.47438 * 9 7 5 12 12 H 1.48493 * 109.47097 * 59.99594 * 11 9 7 13 13 H 1.48504 * 109.47340 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47006 * 299.99503 * 11 9 7 15 15 N 1.46494 * 109.47359 * 120.00204 * 2 1 3 16 16 C 1.34776 * 119.99943 * 275.00050 * 15 2 1 17 17 O 1.21605 * 120.00306 * 359.97438 * 16 15 2 18 18 C 1.47301 * 119.99870 * 179.97438 * 16 15 2 19 19 C 1.34222 * 124.78982 * 180.29017 * 18 16 15 20 20 C 1.39565 * 115.52907 * 180.22473 * 19 18 16 21 21 C 1.47753 * 129.59681 * 179.81797 * 20 19 18 22 22 C 1.34060 * 119.56236 * 179.69921 * 21 20 19 23 23 N 1.36551 * 121.42245 * 0.02562 * 22 21 20 24 24 H 0.97005 * 119.16476 * 179.97438 * 23 22 21 25 25 C 1.34311 * 121.68007 * 0.02562 * 23 22 21 26 26 O 1.21950 * 119.69370 * 179.97438 * 25 23 22 27 27 C 1.39388 * 112.90510 * 359.52648 * 20 19 18 28 28 S 1.75561 * 124.79091 * 0.02562 * 18 16 15 29 29 H 1.08995 * 109.46825 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46732 * 299.99808 * 1 2 3 31 31 H 1.08997 * 109.47405 * 59.99514 * 1 2 3 32 32 H 1.09003 * 109.46722 * 304.99671 * 4 2 1 33 33 H 1.08995 * 109.47554 * 64.99389 * 4 2 1 34 34 H 1.08997 * 109.46809 * 94.22464 * 6 5 4 35 35 H 1.08994 * 109.46825 * 214.22548 * 6 5 4 36 36 H 1.09000 * 109.47121 * 334.22709 * 6 5 4 37 37 H 0.97006 * 119.99834 * 180.02562 * 10 9 7 38 38 H 0.96999 * 119.99848 * 95.00072 * 15 2 1 39 39 H 1.07993 * 122.23380 * 0.05769 * 19 18 16 40 40 H 1.08001 * 120.21936 * 359.67715 * 21 20 19 41 41 H 1.07996 * 119.28647 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5000 -0.8264 -1.1907 6 6 4.3343 0.2341 -1.7614 7 6 4.0850 -1.9158 -0.6025 8 1 3.5335 -2.8396 -0.5081 9 6 5.3866 -1.8329 -0.1275 10 7 5.9795 -0.6615 -0.0337 11 14 6.2969 -3.3836 0.3785 12 1 6.3973 -4.3006 -0.7852 13 1 7.6604 -3.0270 0.8463 14 1 5.5566 -4.0562 1.4762 15 7 2.0184 -0.6906 1.1961 16 6 2.1471 -0.0183 2.3571 17 8 1.8583 1.1617 2.4117 18 6 2.6376 -0.7129 3.5599 19 6 2.7971 -0.1403 4.7633 20 6 3.2799 -0.9789 5.7691 21 6 3.5708 -0.6789 7.1863 22 6 4.0289 -1.6512 7.9876 23 7 4.2347 -2.9186 7.5231 24 1 4.5675 -3.5969 8.1316 25 6 3.9891 -3.2500 6.2449 26 8 4.1862 -4.3931 5.8686 27 6 3.5008 -2.2828 5.3288 28 16 3.0900 -2.4080 3.6233 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.6054 -1.7197 -1.2953 33 1 1.7516 -0.1583 -2.1370 34 1 4.6022 0.9456 -0.9804 35 1 5.2403 -0.2028 -2.1813 36 1 3.7810 0.7485 -2.5472 37 1 6.8893 -0.6036 0.2979 38 1 2.2491 -1.6318 1.1525 39 1 2.5696 0.9003 4.9408 40 1 3.4158 0.3171 7.5740 41 1 4.2405 -1.4269 9.0226 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322194168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:36 Heat of formation + Delta-G solvation = -19.839577 kcal Electronic energy + Delta-G solvation = -26792.666764 eV Core-core repulsion = 22992.272498 eV Total energy + Delta-G solvation = -3800.394266 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.05180 -40.89729 -38.74103 -38.03384 -37.05973 -35.77223 -33.37311 -32.49152 -31.55310 -30.67720 -28.04385 -27.38935 -26.76060 -24.79892 -23.70166 -22.80271 -21.57273 -21.43565 -20.12134 -19.34056 -18.62956 -17.90952 -17.67643 -17.00482 -16.89285 -16.74948 -16.66922 -16.08864 -15.59312 -15.45704 -15.26637 -14.94807 -14.57722 -14.50277 -13.99714 -13.83503 -13.73344 -13.35244 -13.12259 -13.05469 -13.04317 -12.85811 -12.72529 -12.62648 -12.18039 -12.05787 -11.99851 -11.96846 -11.71523 -11.51264 -11.17407 -10.61525 -10.52468 -10.18179 -9.92993 -8.82098 -8.77890 -7.81805 -5.27221 -1.05144 0.11345 0.42520 0.71371 1.00175 1.41783 1.46107 1.46914 1.96834 2.03054 2.23091 2.46525 2.48272 3.34176 3.44322 3.56098 3.70652 3.80586 3.83701 4.13371 4.23650 4.40610 4.49908 4.52179 4.65517 4.75588 4.83687 4.89885 4.94496 4.99365 5.00962 5.16188 5.22283 5.35410 5.38695 5.59851 5.64521 5.75522 5.75710 5.86132 6.32347 6.50840 6.82348 7.11750 7.16762 7.88466 8.33019 9.21212 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011824 B = 0.004877 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.581975 B = 5739.784133 C = 7216.458481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.118 3.882 3 H 0.051 0.949 4 C 0.139 3.861 5 N -0.612 5.612 6 C 0.178 3.822 7 C -0.247 4.247 8 H 0.075 0.925 9 C -0.032 4.032 10 N -0.928 5.928 11 Si 0.927 3.073 12 H -0.276 1.276 13 H -0.303 1.303 14 H -0.272 1.272 15 N -0.680 5.680 16 C 0.582 3.418 17 O -0.570 6.570 18 C -0.216 4.216 19 C -0.071 4.071 20 C 0.006 3.994 21 C -0.186 4.186 22 C 0.132 3.868 23 N -0.600 5.600 24 H 0.435 0.565 25 C 0.559 3.441 26 O -0.590 6.590 27 C -0.311 4.311 28 S 0.211 5.789 29 H 0.069 0.931 30 H 0.043 0.957 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.082 0.918 34 H -0.006 1.006 35 H 0.019 0.981 36 H 0.031 0.969 37 H 0.243 0.757 38 H 0.402 0.598 39 H 0.172 0.828 40 H 0.189 0.811 41 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.678 0.282 16.099 18.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.011 3.989 3 H 0.069 0.931 4 C 0.012 3.988 5 N -0.334 5.334 6 C 0.033 3.967 7 C -0.377 4.377 8 H 0.093 0.907 9 C -0.228 4.228 10 N -0.575 5.575 11 Si 0.756 3.244 12 H -0.202 1.202 13 H -0.229 1.229 14 H -0.198 1.198 15 N -0.327 5.327 16 C 0.367 3.633 17 O -0.452 6.452 18 C -0.338 4.338 19 C -0.105 4.105 20 C -0.011 4.011 21 C -0.210 4.210 22 C 0.008 3.992 23 N -0.237 5.237 24 H 0.275 0.725 25 C 0.355 3.645 26 O -0.475 6.475 27 C -0.432 4.432 28 S 0.482 5.518 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.012 0.988 35 H 0.038 0.962 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.238 0.762 39 H 0.189 0.811 40 H 0.207 0.793 41 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -8.643 -0.676 14.607 16.986 hybrid contribution 1.384 -0.201 1.139 1.803 sum -7.260 -0.877 15.746 17.361 Atomic orbital electron populations 1.22047 0.93192 1.02810 1.02580 1.21912 0.94545 0.96551 0.85863 0.93057 1.21436 0.83215 0.99478 0.94624 1.44109 1.00904 1.22006 1.66406 1.20517 0.92795 0.89874 0.93496 1.19297 0.96924 0.90303 1.31225 0.90723 1.25415 0.99637 0.97448 1.00295 1.70211 1.13056 1.23003 1.51233 0.85944 0.78217 0.81473 0.78767 1.20222 1.22939 1.19769 1.45765 1.64073 1.14125 1.08778 1.17240 0.77456 0.85851 0.82750 1.90702 1.53270 1.15782 1.85459 1.24425 1.10666 0.99499 0.99202 1.20286 0.98332 1.02311 0.89536 1.19717 0.95168 0.89643 0.96536 1.21835 1.08588 1.02630 0.87934 1.22446 0.93760 0.81221 1.01787 1.42969 1.57261 1.13606 1.09865 0.72458 1.15850 0.78954 0.86733 0.82951 1.90958 1.56435 1.22070 1.78021 1.24316 1.19014 1.00045 0.99798 1.84531 1.60507 1.04241 1.02558 0.91218 0.93796 0.89353 0.91557 0.89990 0.98807 0.96222 0.95091 0.94781 0.76244 0.81089 0.79344 0.75079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 9.48 71.98 0.68 -3.42 16 2 C 0.12 4.32 2.88 45.00 0.13 4.45 16 3 H 0.05 2.19 7.58 -2.39 -0.02 2.17 16 4 C 0.14 5.07 5.36 86.38 0.46 5.53 16 5 N -0.61 -28.84 2.82 -726.93 -2.05 -30.89 16 6 C 0.18 8.73 9.01 127.77 1.15 9.88 16 7 C -0.25 -12.66 8.02 84.03 0.67 -11.99 16 8 H 0.08 3.65 7.84 -2.91 -0.02 3.63 16 9 C -0.03 -1.75 5.13 84.86 0.44 -1.31 16 10 N -0.93 -54.83 10.59 21.65 0.23 -54.61 16 11 Si 0.93 45.55 29.57 68.60 2.03 47.57 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 13 H -0.30 -15.41 7.11 99.48 0.71 -14.70 16 14 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 15 N -0.68 -27.22 4.48 -445.93 -2.00 -29.22 16 16 C 0.58 24.37 7.77 86.63 0.67 25.04 16 17 O -0.57 -26.03 16.41 -4.05 -0.07 -26.10 16 18 C -0.22 -8.12 6.36 23.74 0.15 -7.97 16 19 C -0.07 -2.23 9.82 21.67 0.21 -2.02 16 20 C 0.01 0.17 6.08 -20.16 -0.12 0.04 16 21 C -0.19 -2.72 10.29 23.84 0.25 -2.48 16 22 C 0.13 1.23 11.11 83.01 0.92 2.15 16 23 N -0.60 -10.14 5.23 -319.28 -1.67 -11.81 16 24 H 0.43 4.63 8.87 -92.70 -0.82 3.81 16 25 C 0.56 17.07 7.71 85.22 0.66 17.73 16 26 O -0.59 -22.91 17.89 -5.15 -0.09 -23.00 16 27 C -0.31 -10.25 6.48 23.45 0.15 -10.10 16 28 S 0.21 7.95 22.27 -56.49 -1.26 6.70 16 29 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.07 2.22 8.03 -2.39 -0.02 2.21 16 33 H 0.08 2.57 7.86 -2.39 -0.02 2.55 16 34 H -0.01 -0.36 7.42 -2.39 -0.02 -0.38 16 35 H 0.02 1.03 7.19 -2.39 -0.02 1.01 16 36 H 0.03 1.27 7.84 -2.39 -0.02 1.25 16 37 H 0.24 14.35 8.31 -92.70 -0.77 13.58 16 38 H 0.40 16.21 6.47 -92.71 -0.60 15.61 16 39 H 0.17 4.73 7.98 -2.91 -0.02 4.71 16 40 H 0.19 1.36 8.06 -2.91 -0.02 1.33 16 41 H 0.23 -0.76 8.06 -2.91 -0.02 -0.79 16 Total: -1.00 -80.95 362.01 1.22 -79.73 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -0.33 Total: 16.07 kcal Atomic # 6 Polarization: 19.13 SS G_CDS: 6.43 Total: 25.55 kcal Atomic # 7 Polarization: -121.04 SS G_CDS: -5.49 Total: -126.53 kcal Atomic # 8 Polarization: -48.94 SS G_CDS: -0.16 Total: -49.10 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 16 Polarization: 7.95 SS G_CDS: -1.26 Total: 6.70 kcal Total: -80.95 1.22 -79.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322194168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.887 kcal (2) G-P(sol) polarization free energy of solvation -80.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds