Wall clock time and date at job start Tue Mar 31 2020 18:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30256 * 125.62323 * 2 1 4 4 C 1.34468 * 108.70384 * 179.73137 * 3 2 1 5 5 C 1.34330 * 107.66971 * 0.39394 * 4 3 2 6 6 C 1.50701 * 126.44458 * 179.87937 * 5 4 3 7 7 N 1.46495 * 109.47190 * 89.70951 * 6 5 4 8 8 C 1.34783 * 119.99833 * 179.72063 * 7 6 5 9 9 O 1.21598 * 119.99823 * 0.28459 * 8 7 6 10 10 N 1.34780 * 120.00019 * 180.27111 * 8 7 6 11 11 C 1.40130 * 119.99755 * 175.62912 * 10 8 7 12 12 C 1.38699 * 120.07452 * 34.60549 * 11 10 8 13 13 C 1.38202 * 120.02012 * 179.69713 * 12 11 10 14 14 C 1.38551 * 120.17524 * 0.59348 * 13 12 11 15 15 F 1.35090 * 119.92815 * 179.70169 * 14 13 12 16 16 C 1.38354 * 120.14524 * 359.68309 * 14 13 12 17 17 C 1.38730 * 119.97998 * 0.02562 * 16 14 13 18 18 O 1.35779 * 120.08748 * 180.02562 * 17 16 14 19 19 C 1.34803 * 116.99929 * 5.43457 * 18 17 16 20 20 H 1.08004 * 120.00309 * 354.95230 * 19 18 17 21 21 C 1.38632 * 120.00240 * 174.95669 * 19 18 17 22 22 N 1.31575 * 119.99894 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00420 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47394 * 89.99575 * 23 21 19 25 25 H 1.48497 * 109.47353 * 209.99837 * 23 21 19 26 26 H 1.48499 * 109.46654 * 329.99861 * 23 21 19 27 27 O 1.33974 * 125.61791 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47766 * 270.02432 * 1 2 3 29 29 H 1.09007 * 109.47125 * 30.02946 * 1 2 3 30 30 H 1.09000 * 109.47142 * 150.02466 * 1 2 3 31 31 H 1.07999 * 126.17066 * 180.26856 * 4 3 2 32 32 H 1.08998 * 109.47198 * 329.70651 * 6 5 4 33 33 H 1.09006 * 109.47224 * 209.71082 * 6 5 4 34 34 H 0.96997 * 120.00217 * 359.97438 * 7 6 5 35 35 H 0.96996 * 119.99788 * 355.63672 * 10 8 7 36 36 H 1.07990 * 119.99135 * 359.96978 * 12 11 10 37 37 H 1.07996 * 119.91456 * 180.29900 * 13 12 11 38 38 H 1.08000 * 120.00424 * 180.02562 * 16 14 13 39 39 H 0.97003 * 120.00300 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5521 0.6675 0.0060 5 6 3.5697 -0.6757 0.0009 6 6 4.7936 -1.5550 0.0021 7 7 5.1892 -1.8395 1.3836 8 6 6.2619 -2.6172 1.6309 9 8 6.9043 -3.0783 0.7072 10 7 6.6226 -2.8834 2.9020 11 6 7.6809 -3.7649 3.1598 12 6 8.7696 -3.8138 2.3019 13 6 9.8157 -4.6791 2.5607 14 6 9.7752 -5.5086 3.6698 15 9 10.7976 -6.3568 3.9147 16 6 8.6900 -5.4698 4.5272 17 6 7.6393 -4.5992 4.2766 18 8 6.5735 -4.5590 5.1169 19 6 6.6478 -5.3072 6.2357 20 1 7.4904 -5.9648 6.3908 21 6 5.6424 -5.2328 7.1874 22 7 4.6161 -4.4314 6.9988 23 14 5.7456 -6.2691 8.7382 24 1 6.4608 -5.5092 9.7947 25 1 4.3751 -6.5974 9.2063 26 1 6.4830 -7.5246 8.4463 27 8 2.2872 -1.0891 0.0005 28 1 -0.3635 0.0004 1.0276 29 1 -0.3634 0.8898 -0.5143 30 1 -0.3633 -0.8902 -0.5134 31 1 4.4156 1.3161 0.0116 32 1 5.6083 -1.0443 -0.5113 33 1 4.5698 -2.4900 -0.5117 34 1 4.6770 -1.4712 2.1204 35 1 6.1496 -2.4649 3.6381 36 1 8.8020 -3.1723 1.4337 37 1 10.6647 -4.7123 1.8942 38 1 8.6610 -6.1171 5.3912 39 1 3.9128 -4.3790 7.6649 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364101471.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:36 Heat of formation + Delta-G solvation = -43.075254 kcal Electronic energy + Delta-G solvation = -27458.721786 eV Core-core repulsion = 23091.106769 eV Total energy + Delta-G solvation = -4367.615017 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.111 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.25887 -43.61755 -40.29346 -38.82972 -36.53088 -35.15419 -35.02652 -34.09920 -32.43332 -32.34550 -29.70966 -29.28380 -27.92958 -25.56304 -25.27351 -22.71983 -22.40131 -21.71218 -21.29890 -20.61148 -18.52795 -18.33328 -17.87353 -17.21845 -16.96891 -16.67402 -15.72197 -15.30513 -15.22389 -15.10222 -14.99154 -14.63069 -14.38477 -14.27618 -13.95678 -13.63884 -13.53697 -13.41979 -13.29663 -13.20791 -13.02061 -12.64959 -12.33861 -12.16166 -11.68009 -11.55038 -11.38133 -10.98443 -10.83527 -10.75279 -10.56497 -10.02106 -9.79566 -9.52642 -9.18144 -9.05248 -8.97958 -7.89078 -7.13105 -6.62417 -4.20391 1.02325 1.83496 2.11414 2.26848 2.37152 2.95327 3.05074 3.06640 3.10978 3.37170 3.74988 3.83426 4.33221 4.36790 4.42348 4.72314 4.84524 4.85313 4.94177 5.02254 5.10772 5.13823 5.20960 5.33876 5.57060 5.58341 5.73380 5.76294 6.01613 6.02986 6.17045 6.30123 6.56605 6.65424 6.89507 6.91314 7.04629 7.08403 7.24681 7.42864 7.64420 7.81660 8.15689 8.73869 8.83877 9.44888 10.54592 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.009952 B = 0.003068 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.697837 B = 9122.798168 C =11684.780839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.198 3.802 3 N -0.488 5.488 4 C -0.012 4.012 5 C -0.068 4.068 6 C 0.231 3.769 7 N -0.747 5.747 8 C 0.708 3.292 9 O -0.583 6.583 10 N -0.661 5.661 11 C 0.075 3.925 12 C -0.049 4.049 13 C -0.229 4.229 14 C 0.129 3.871 15 F -0.151 7.151 16 C -0.258 4.258 17 C 0.158 3.842 18 O -0.168 6.168 19 C -0.393 4.393 20 H 0.095 0.905 21 C 0.043 3.957 22 N -0.860 5.860 23 Si 0.942 3.058 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.266 1.266 27 O -0.194 6.194 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.188 0.812 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.401 0.599 35 H 0.412 0.588 36 H 0.143 0.857 37 H 0.123 0.877 38 H 0.143 0.857 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.458 8.239 -10.731 14.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.009 4.009 3 N -0.218 5.218 4 C -0.152 4.152 5 C -0.122 4.122 6 C 0.106 3.894 7 N -0.404 5.404 8 C 0.409 3.591 9 O -0.462 6.462 10 N -0.308 5.308 11 C -0.019 4.019 12 C -0.070 4.070 13 C -0.249 4.249 14 C 0.109 3.891 15 F -0.130 7.130 16 C -0.279 4.279 17 C 0.101 3.899 18 O -0.071 6.071 19 C -0.468 4.468 20 H 0.112 0.888 21 C -0.162 4.162 22 N -0.494 5.494 23 Si 0.767 3.233 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.190 1.190 27 O -0.081 6.081 28 H 0.114 0.886 29 H 0.120 0.880 30 H 0.108 0.892 31 H 0.205 0.795 32 H 0.121 0.879 33 H 0.105 0.895 34 H 0.236 0.764 35 H 0.248 0.752 36 H 0.161 0.839 37 H 0.141 0.859 38 H 0.160 0.840 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.591 8.539 -11.464 15.014 hybrid contribution 0.019 -1.036 1.626 1.928 sum -4.572 7.503 -9.838 13.190 Atomic orbital electron populations 1.20308 0.81162 1.05193 1.05017 1.26423 0.96623 0.78646 0.99164 1.70508 1.02029 1.30240 1.19035 1.23204 0.95268 0.92842 1.03867 1.23348 0.83676 0.95331 1.09812 1.19304 0.88430 0.97926 0.83715 1.45083 1.31591 1.55685 1.08057 1.15772 0.80626 0.79175 0.83528 1.90891 1.55417 1.56521 1.43333 1.42147 1.35226 1.47010 1.06423 1.16640 0.90153 0.96924 0.98214 1.20672 0.89864 0.98070 0.98361 1.20491 1.01841 1.02713 0.99842 1.17466 0.85172 0.90660 0.95788 1.91408 1.57989 1.69274 1.94347 1.20844 0.95483 1.07123 1.04458 1.18817 0.87915 0.91810 0.91323 1.83932 1.32438 1.60929 1.29806 1.21357 1.09279 1.21562 0.94647 0.88805 1.25279 0.94716 0.97376 0.98800 1.70010 1.09044 1.35182 1.35198 0.85681 0.78181 0.79478 0.80006 1.19726 1.20179 1.19039 1.84438 1.16539 1.37687 1.69421 0.88597 0.88021 0.89178 0.79545 0.87892 0.89548 0.76429 0.75222 0.83902 0.85910 0.83953 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.35 10.51 36.00 0.38 0.03 16 2 C 0.20 2.06 8.34 -12.95 -0.11 1.95 16 3 N -0.49 -5.74 11.29 -11.10 -0.13 -5.86 16 4 C -0.01 -0.13 11.80 -17.78 -0.21 -0.34 16 5 C -0.07 -0.74 6.75 -35.69 -0.24 -0.99 16 6 C 0.23 2.52 6.22 -5.20 -0.03 2.49 16 7 N -0.75 -9.63 5.55 -66.41 -0.37 -10.00 16 8 C 0.71 11.87 8.41 -86.91 -0.73 11.14 16 9 O -0.58 -11.15 13.76 5.28 0.07 -11.07 16 10 N -0.66 -11.96 5.20 -14.07 -0.07 -12.03 16 11 C 0.08 1.55 6.33 -83.44 -0.53 1.02 16 12 C -0.05 -0.93 8.70 -39.42 -0.34 -1.27 16 13 C -0.23 -4.20 10.02 -39.48 -0.40 -4.59 16 14 C 0.13 2.56 7.29 -39.42 -0.29 2.27 16 15 F -0.15 -2.88 17.26 2.25 0.04 -2.84 16 16 C -0.26 -5.59 9.14 -39.36 -0.36 -5.95 16 17 C 0.16 3.60 6.66 -38.94 -0.26 3.34 16 18 O -0.17 -4.36 9.32 0.04 0.00 -4.35 16 19 C -0.39 -10.28 9.49 30.88 0.29 -9.98 16 20 H 0.09 2.31 5.20 -52.48 -0.27 2.04 16 21 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 22 N -0.86 -23.32 13.67 55.48 0.76 -22.56 16 23 Si 0.94 19.58 29.55 -169.99 -5.02 14.56 16 24 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 25 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 26 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 27 O -0.19 -2.28 10.78 5.34 0.06 -2.23 16 28 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.19 1.49 8.06 -52.49 -0.42 1.06 16 32 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.40 4.71 8.48 -40.82 -0.35 4.36 16 35 H 0.41 7.12 8.59 -40.82 -0.35 6.77 16 36 H 0.14 2.61 6.19 -52.49 -0.32 2.28 16 37 H 0.12 1.94 8.06 -52.49 -0.42 1.51 16 38 H 0.14 3.08 5.64 -52.49 -0.30 2.79 16 39 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 352.10 15.07 5.31 5.31 Total: -1.00 -31.87 352.10 -5.96 -37.83 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -3.68 Total: 13.12 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -2.92 Total: 0.14 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.19 Total: -50.46 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: 0.13 Total: -17.66 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.04 Total: -2.84 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.87 -5.96 -37.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364101471.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.242 kcal (2) G-P(sol) polarization free energy of solvation -31.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds