Wall clock time and date at job start Tue Mar 31 2020 19:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36237 * 117.00031 * 2 1 4 4 C 1.35582 * 126.04677 * 0.02562 * 3 2 1 5 5 N 1.35884 * 107.57926 * 179.97438 * 4 3 2 6 6 C 1.46502 * 126.07947 * 180.02562 * 5 4 3 7 7 N 1.40079 * 107.84092 * 359.97438 * 5 4 3 8 8 C 1.30876 * 108.32600 * 359.71864 * 7 5 4 9 9 C 1.50698 * 125.82641 * 180.25738 * 8 7 5 10 10 H 1.09000 * 109.47149 * 165.21195 * 9 8 7 11 11 C 1.52996 * 109.46867 * 285.21453 * 9 8 7 12 12 N 1.46499 * 109.46904 * 45.21596 * 9 8 7 13 13 C 1.34773 * 119.99909 * 155.00676 * 12 9 8 14 14 O 1.21761 * 119.99919 * 359.97438 * 13 12 9 15 15 C 1.46243 * 120.00191 * 179.97438 * 13 12 9 16 16 S 1.75661 * 125.22633 * 0.02562 * 15 13 12 17 17 C 1.75472 * 92.09243 * 179.97438 * 16 15 13 18 18 C 1.32764 * 111.36274 * 0.02562 * 17 16 15 19 19 C 1.39544 * 125.22722 * 179.71390 * 15 13 12 20 20 C 1.40531 * 123.71510 * 0.02562 * 19 15 13 21 21 H 1.07996 * 120.00452 * 23.43285 * 20 19 15 22 22 C 1.40313 * 119.99741 * 203.42708 * 20 19 15 23 23 N 1.30636 * 120.00214 * 9.79195 * 22 20 19 24 24 Si 1.86805 * 119.99813 * 189.78678 * 22 20 19 25 25 H 1.48497 * 109.46863 * 90.00324 * 24 22 20 26 26 H 1.48499 * 109.47226 * 210.00002 * 24 22 20 27 27 H 1.48499 * 109.47122 * 330.00553 * 24 22 20 28 28 H 1.09003 * 109.47077 * 300.00152 * 1 2 3 29 29 H 1.08997 * 109.47233 * 60.00388 * 1 2 3 30 30 H 1.08998 * 109.47087 * 180.02562 * 1 2 3 31 31 H 1.08001 * 126.21762 * 359.97438 * 4 3 2 32 32 H 1.09001 * 109.46897 * 90.00408 * 6 5 4 33 33 H 1.09001 * 109.46595 * 209.99966 * 6 5 4 34 34 H 1.08995 * 109.46958 * 329.99949 * 6 5 4 35 35 H 1.09000 * 109.47447 * 59.99925 * 11 9 8 36 36 H 1.08996 * 109.47191 * 180.02562 * 11 9 8 37 37 H 1.08998 * 109.47155 * 299.99892 * 11 9 8 38 38 H 0.97000 * 119.99955 * 334.98971 * 12 9 8 39 39 H 1.07994 * 124.31965 * 179.97438 * 17 16 15 40 40 H 1.07996 * 122.78523 * 180.02562 * 18 17 16 41 41 H 0.97001 * 120.00204 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0475 1.2139 0.0000 4 6 1.4330 2.4224 0.0005 5 7 2.4016 3.3754 0.0009 6 6 2.1863 4.8245 0.0020 7 7 3.6427 2.7258 0.0012 8 6 3.4312 1.4343 0.0071 9 6 4.4944 0.3664 0.0151 10 1 4.0460 -0.5908 0.2811 11 6 5.1259 0.2651 -1.3748 12 7 5.5260 0.7117 0.9963 13 6 6.2799 -0.2580 1.5510 14 8 6.1033 -1.4211 1.2371 15 6 7.3101 0.0868 2.5301 16 16 7.6802 1.7130 3.0815 17 6 8.9445 1.1320 4.1507 18 6 9.0652 -0.1885 4.0840 19 6 8.1460 -0.8262 3.1744 20 6 8.0999 -2.2139 2.9572 21 1 7.6946 -2.6030 2.0349 22 6 8.5807 -3.0939 3.9386 23 7 8.8923 -2.6427 5.1244 24 14 8.7752 -4.9106 3.5497 25 1 10.1375 -5.1589 3.0135 26 1 8.5782 -5.7058 4.7882 27 1 7.7645 -5.3112 2.5381 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.3671 2.5963 0.0006 32 1 2.1333 5.1831 1.0300 33 1 3.0131 5.3150 -0.5118 34 1 1.2524 5.0534 -0.5114 35 1 5.5743 1.2224 -1.6408 36 1 5.8946 -0.5076 -1.3692 37 1 4.3583 0.0082 -2.1048 38 1 5.6666 1.6383 1.2465 39 1 9.5480 1.7674 4.7817 40 1 9.7882 -0.7398 4.6668 41 1 9.2243 -3.2512 5.8030 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364293429.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:40 Heat of formation + Delta-G solvation = 29.848721 kcal Electronic energy + Delta-G solvation = -26082.866392 eV Core-core repulsion = 22284.626773 eV Total energy + Delta-G solvation = -3798.239620 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.41091 -38.32300 -38.00773 -36.11255 -34.79489 -32.97655 -32.53887 -30.18671 -29.53603 -28.71787 -27.80698 -26.09435 -25.89809 -23.27556 -21.98689 -21.11699 -20.17199 -19.28949 -18.70046 -18.13709 -17.24306 -16.09631 -15.88292 -15.76374 -15.44197 -15.08677 -14.96191 -14.59056 -14.32213 -13.82866 -13.63124 -13.36158 -13.19924 -12.88369 -12.76902 -12.39864 -12.21626 -12.00739 -11.81680 -11.62424 -11.48954 -11.36664 -11.22135 -11.04661 -10.93452 -10.86270 -10.69087 -10.35304 -10.04939 -9.55391 -9.35024 -9.16704 -8.32637 -8.14721 -7.90274 -7.40750 -7.05338 -6.96582 -4.44184 1.71215 2.24071 2.30911 2.70017 3.02008 3.05155 3.14082 3.21875 3.46367 3.72911 3.88409 3.93116 4.22669 4.35079 4.54592 4.66523 4.80304 4.97192 4.99681 5.08308 5.20633 5.33876 5.38791 5.45108 5.52720 5.72427 5.84580 6.04972 6.12069 6.25658 6.36443 6.61461 6.76119 6.83827 6.92522 7.24716 7.28752 7.34606 7.43551 7.55991 7.69602 7.79643 8.45233 8.56954 8.69834 8.89229 9.70370 9.94674 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.013889 B = 0.003412 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.516469 B = 8204.743454 C = 9533.704213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.297 6.297 3 C -0.010 4.010 4 C -0.035 4.035 5 N -0.373 5.373 6 C 0.110 3.890 7 N -0.257 5.257 8 C 0.074 3.926 9 C 0.234 3.766 10 H 0.105 0.895 11 C -0.153 4.153 12 N -0.741 5.741 13 C 0.603 3.397 14 O -0.562 6.562 15 C -0.427 4.427 16 S -0.049 6.049 17 C -0.208 4.208 18 C -0.099 4.099 19 C 0.141 3.859 20 C -0.378 4.378 21 H 0.112 0.888 22 C 0.067 3.933 23 N -0.780 5.780 24 Si 0.924 3.076 25 H -0.265 1.265 26 H -0.276 1.276 27 H -0.253 1.253 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.098 0.902 31 H 0.173 0.827 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.394 0.606 39 H 0.136 0.864 40 H 0.145 0.855 41 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.958 9.494 -7.296 17.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.209 6.209 3 C -0.066 4.066 4 C -0.178 4.178 5 N -0.161 5.161 6 C -0.031 4.031 7 N -0.081 5.081 8 C -0.093 4.093 9 C 0.127 3.873 10 H 0.123 0.877 11 C -0.212 4.212 12 N -0.394 5.394 13 C 0.400 3.600 14 O -0.445 6.445 15 C -0.546 4.546 16 S 0.206 5.794 17 C -0.342 4.342 18 C -0.132 4.132 19 C 0.130 3.870 20 C -0.409 4.409 21 H 0.130 0.870 22 C -0.154 4.154 23 N -0.405 5.405 24 Si 0.747 3.253 25 H -0.190 1.190 26 H -0.201 1.201 27 H -0.177 1.177 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.116 0.884 31 H 0.191 0.809 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.228 0.772 39 H 0.154 0.846 40 H 0.162 0.838 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.692 10.863 -7.612 18.358 hybrid contribution -0.333 -1.775 0.640 1.916 sum -13.026 9.087 -6.972 17.345 Atomic orbital electron populations 1.22953 0.79089 1.03768 1.00490 1.86137 1.20244 1.23736 1.90742 1.18650 0.91583 0.84885 1.11436 1.22197 0.95694 0.88364 1.11549 1.47995 1.03212 1.06085 1.58794 1.21801 1.03267 0.74692 1.03364 1.77318 1.02777 1.05169 1.22857 1.22168 0.92352 0.92503 1.02314 1.19000 0.84699 0.93737 0.89893 0.87724 1.22136 1.01157 1.02562 0.95371 1.45891 1.37875 1.10381 1.45297 1.16825 0.79644 0.84078 0.79464 1.90651 1.70610 1.18918 1.64363 1.22589 1.15419 0.93408 1.23136 1.82796 1.39422 1.12346 1.44819 1.24951 1.04047 0.98950 1.06226 1.21721 1.00122 0.92436 0.98913 1.17925 0.87761 0.93375 0.87949 1.20046 1.28193 0.90061 1.02637 0.86974 1.26373 0.91822 1.03029 0.94166 1.69677 1.29201 1.38490 1.03125 0.86023 0.80119 0.79806 0.79350 1.18986 1.20065 1.17657 0.93341 0.93421 0.88393 0.80944 0.90775 0.89169 0.89742 0.92545 0.90969 0.92346 0.77198 0.84592 0.83783 0.90213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.12 101.05 1.02 1.32 16 2 O -0.30 -4.27 10.50 -20.50 -0.22 -4.49 16 3 C -0.01 -0.16 6.95 -39.83 -0.28 -0.43 16 4 C -0.03 -0.41 10.58 -16.71 -0.18 -0.58 16 5 N -0.37 -4.61 4.04 -67.84 -0.27 -4.88 16 6 C 0.11 0.80 11.48 59.85 0.69 1.48 16 7 N -0.26 -4.15 12.26 33.72 0.41 -3.74 16 8 C 0.07 1.26 6.02 -82.30 -0.50 0.77 16 9 C 0.23 4.45 3.05 -69.09 -0.21 4.24 16 10 H 0.10 2.17 7.49 -51.93 -0.39 1.79 16 11 C -0.15 -2.60 9.47 37.16 0.35 -2.25 16 12 N -0.74 -16.00 5.06 -56.38 -0.29 -16.29 16 13 C 0.60 15.50 7.73 -13.05 -0.10 15.40 16 14 O -0.56 -15.75 14.11 5.13 0.07 -15.68 16 15 C -0.43 -11.26 6.51 -35.88 -0.23 -11.49 16 16 S -0.05 -1.11 22.25 -107.50 -2.39 -3.50 16 17 C -0.21 -4.69 11.07 28.86 0.32 -4.37 16 18 C -0.10 -2.49 9.04 -39.12 -0.35 -2.84 16 19 C 0.14 3.87 5.67 -106.21 -0.60 3.27 16 20 C -0.38 -10.44 8.52 -37.94 -0.32 -10.76 16 21 H 0.11 3.24 6.03 -52.49 -0.32 2.92 16 22 C 0.07 1.68 5.39 -17.28 -0.09 1.59 16 23 N -0.78 -19.30 10.82 55.57 0.60 -18.70 16 24 Si 0.92 18.94 29.57 -169.99 -5.03 13.91 16 25 H -0.26 -5.25 7.11 56.52 0.40 -4.84 16 26 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 27 H -0.25 -5.36 7.11 56.52 0.40 -4.96 16 28 H 0.05 0.38 8.08 -51.93 -0.42 -0.04 16 29 H 0.05 0.34 8.08 -51.93 -0.42 -0.08 16 30 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.17 1.30 7.62 -52.49 -0.40 0.90 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.39 8.25 7.42 -40.82 -0.30 7.95 16 39 H 0.14 2.60 8.06 -52.49 -0.42 2.18 16 40 H 0.14 3.57 6.41 -52.49 -0.34 3.23 16 41 H 0.29 6.35 8.29 -40.82 -0.34 6.02 16 LS Contribution 366.00 15.07 5.52 5.52 Total: -1.00 -32.98 366.00 -7.18 -40.16 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -5.10 Total: 12.37 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -0.49 Total: -4.67 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.45 Total: -43.61 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.14 Total: -20.17 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Atomic # 16 Polarization: -1.11 SS G_CDS: -2.39 Total: -3.50 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.98 -7.18 -40.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364293429.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.005 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds