Wall clock time and date at job start Tue Mar 31 2020 19:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36237 * 117.00031 * 2 1 4 4 C 1.35582 * 126.04677 * 0.02562 * 3 2 1 5 5 N 1.35884 * 107.57926 * 179.97438 * 4 3 2 6 6 C 1.46502 * 126.07947 * 180.02562 * 5 4 3 7 7 N 1.40079 * 107.84092 * 359.97438 * 5 4 3 8 8 C 1.30876 * 108.32600 * 359.71864 * 7 5 4 9 9 C 1.50698 * 125.82641 * 180.25738 * 8 7 5 10 10 H 1.09000 * 109.47149 * 165.21195 * 9 8 7 11 11 C 1.52996 * 109.46867 * 285.21453 * 9 8 7 12 12 N 1.46499 * 109.46904 * 45.21596 * 9 8 7 13 13 C 1.34773 * 119.99909 * 155.00676 * 12 9 8 14 14 O 1.21761 * 119.99919 * 359.97438 * 13 12 9 15 15 C 1.46243 * 120.00191 * 179.97438 * 13 12 9 16 16 S 1.75661 * 125.22633 * 0.02562 * 15 13 12 17 17 C 1.75472 * 92.09243 * 179.97438 * 16 15 13 18 18 C 1.32764 * 111.36274 * 0.02562 * 17 16 15 19 19 C 1.39544 * 125.22722 * 179.71390 * 15 13 12 20 20 C 1.40531 * 123.71510 * 0.02562 * 19 15 13 21 21 H 1.07996 * 120.00452 * 23.43285 * 20 19 15 22 22 C 1.40313 * 119.99741 * 203.42708 * 20 19 15 23 23 N 1.30636 * 120.00214 * 9.79195 * 22 20 19 24 24 Si 1.86805 * 119.99813 * 189.78678 * 22 20 19 25 25 H 1.48497 * 109.46863 * 90.00324 * 24 22 20 26 26 H 1.48499 * 109.47226 * 210.00002 * 24 22 20 27 27 H 1.48499 * 109.47122 * 330.00553 * 24 22 20 28 28 H 1.09003 * 109.47077 * 300.00152 * 1 2 3 29 29 H 1.08997 * 109.47233 * 60.00388 * 1 2 3 30 30 H 1.08998 * 109.47087 * 180.02562 * 1 2 3 31 31 H 1.08001 * 126.21762 * 359.97438 * 4 3 2 32 32 H 1.09001 * 109.46897 * 90.00408 * 6 5 4 33 33 H 1.09001 * 109.46595 * 209.99966 * 6 5 4 34 34 H 1.08995 * 109.46958 * 329.99949 * 6 5 4 35 35 H 1.09000 * 109.47447 * 59.99925 * 11 9 8 36 36 H 1.08996 * 109.47191 * 180.02562 * 11 9 8 37 37 H 1.08998 * 109.47155 * 299.99892 * 11 9 8 38 38 H 0.97000 * 119.99955 * 334.98971 * 12 9 8 39 39 H 1.07994 * 124.31965 * 179.97438 * 17 16 15 40 40 H 1.07996 * 122.78523 * 180.02562 * 18 17 16 41 41 H 0.97001 * 120.00204 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0475 1.2139 0.0000 4 6 1.4330 2.4224 0.0005 5 7 2.4016 3.3754 0.0009 6 6 2.1863 4.8245 0.0020 7 7 3.6427 2.7258 0.0012 8 6 3.4312 1.4343 0.0071 9 6 4.4944 0.3664 0.0151 10 1 4.0460 -0.5908 0.2811 11 6 5.1259 0.2651 -1.3748 12 7 5.5260 0.7117 0.9963 13 6 6.2799 -0.2580 1.5510 14 8 6.1033 -1.4211 1.2371 15 6 7.3101 0.0868 2.5301 16 16 7.6802 1.7130 3.0815 17 6 8.9445 1.1320 4.1507 18 6 9.0652 -0.1885 4.0840 19 6 8.1460 -0.8262 3.1744 20 6 8.0999 -2.2139 2.9572 21 1 7.6946 -2.6030 2.0349 22 6 8.5807 -3.0939 3.9386 23 7 8.8923 -2.6427 5.1244 24 14 8.7752 -4.9106 3.5497 25 1 10.1375 -5.1589 3.0135 26 1 8.5782 -5.7058 4.7882 27 1 7.7645 -5.3112 2.5381 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.3671 2.5963 0.0006 32 1 2.1333 5.1831 1.0300 33 1 3.0131 5.3150 -0.5118 34 1 1.2524 5.0534 -0.5114 35 1 5.5743 1.2224 -1.6408 36 1 5.8946 -0.5076 -1.3692 37 1 4.3583 0.0082 -2.1048 38 1 5.6666 1.6383 1.2465 39 1 9.5480 1.7674 4.7817 40 1 9.7882 -0.7398 4.6668 41 1 9.2243 -3.2512 5.8030 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364293429.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:39 Heat of formation + Delta-G solvation = 6.837221 kcal Electronic energy + Delta-G solvation = -26083.864246 eV Core-core repulsion = 22284.626773 eV Total energy + Delta-G solvation = -3799.237473 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.45195 -40.20142 -38.94747 -37.97470 -36.42651 -34.90044 -33.73042 -31.74968 -30.62013 -30.51780 -28.58471 -27.95193 -26.86476 -24.75599 -23.68084 -22.24014 -21.67256 -20.83116 -20.58110 -19.56440 -18.58568 -17.67184 -17.30002 -17.00609 -16.77595 -16.56254 -16.05224 -15.76033 -15.67124 -15.54901 -15.34274 -14.72400 -14.37535 -14.20657 -13.98289 -13.82511 -13.69895 -13.53140 -13.31211 -13.15645 -13.04688 -12.84748 -12.73472 -12.44394 -12.20456 -12.07518 -12.01343 -12.00460 -11.86870 -11.39979 -11.04908 -10.47139 -10.27723 -9.96031 -9.34872 -8.94626 -8.89546 -8.84706 -6.44773 0.31874 0.69807 1.34884 1.36061 1.37654 1.45879 1.49599 1.55763 1.80167 1.99200 2.19674 2.54482 2.56104 2.64749 3.32083 3.37891 3.73835 4.02116 4.22682 4.27421 4.28097 4.37244 4.47804 4.48869 4.54016 4.61517 4.72062 4.76317 4.76652 4.80301 4.99785 5.04175 5.08917 5.25959 5.30318 5.40098 5.57723 5.72051 5.85335 5.92875 6.41541 6.43859 6.58503 6.64523 6.73531 6.97654 7.74226 8.09039 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.013889 B = 0.003412 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.516469 B = 8204.743454 C = 9533.704213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.330 6.330 3 C -0.039 4.039 4 C -0.008 4.008 5 N -0.363 5.363 6 C 0.097 3.903 7 N -0.287 5.287 8 C 0.044 3.956 9 C 0.234 3.766 10 H 0.076 0.924 11 C -0.141 4.141 12 N -0.728 5.728 13 C 0.594 3.406 14 O -0.599 6.599 15 C -0.467 4.467 16 S -0.001 6.001 17 C -0.191 4.191 18 C -0.127 4.127 19 C 0.114 3.886 20 C -0.416 4.416 21 H 0.085 0.915 22 C 0.036 3.964 23 N -0.793 5.793 24 Si 0.990 3.010 25 H -0.249 1.249 26 H -0.254 1.254 27 H -0.272 1.272 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.107 0.893 31 H 0.221 0.779 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.124 0.876 35 H 0.062 0.938 36 H 0.048 0.952 37 H 0.080 0.920 38 H 0.398 0.602 39 H 0.178 0.822 40 H 0.143 0.857 41 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.409 11.421 -6.988 19.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.243 6.243 3 C -0.093 4.093 4 C -0.153 4.153 5 N -0.151 5.151 6 C -0.042 4.042 7 N -0.113 5.113 8 C -0.121 4.121 9 C 0.127 3.873 10 H 0.094 0.906 11 C -0.200 4.200 12 N -0.380 5.380 13 C 0.391 3.609 14 O -0.484 6.484 15 C -0.586 4.586 16 S 0.254 5.746 17 C -0.325 4.325 18 C -0.159 4.159 19 C 0.103 3.897 20 C -0.447 4.447 21 H 0.103 0.897 22 C -0.184 4.184 23 N -0.418 5.418 24 Si 0.810 3.190 25 H -0.173 1.173 26 H -0.177 1.177 27 H -0.196 1.196 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.126 0.874 31 H 0.238 0.762 32 H 0.105 0.895 33 H 0.110 0.890 34 H 0.142 0.858 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.232 0.768 39 H 0.195 0.805 40 H 0.161 0.839 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.149 12.858 -7.302 20.466 hybrid contribution -0.026 -2.184 0.552 2.253 sum -14.175 10.674 -6.750 18.985 Atomic orbital electron populations 1.23258 0.76507 1.05147 1.02165 1.86086 1.23045 1.24113 1.91101 1.18813 0.91045 0.86268 1.13225 1.22839 0.97387 0.86797 1.08246 1.48512 1.02213 1.07914 1.56450 1.22287 1.05377 0.71706 1.04845 1.77213 1.05128 1.04909 1.24073 1.21776 0.92854 0.92481 1.04954 1.18938 0.84751 0.93806 0.89770 0.90566 1.22007 1.01013 1.02003 0.94994 1.45740 1.37552 1.09646 1.45077 1.17013 0.80069 0.84203 0.79644 1.90610 1.71761 1.20453 1.65624 1.23017 1.15869 0.95929 1.23753 1.82446 1.38825 1.09269 1.44027 1.25442 1.03299 0.98583 1.05161 1.21624 1.00766 0.93431 1.00105 1.18376 0.88510 0.93924 0.88928 1.20050 1.30503 0.91217 1.02926 0.89694 1.27073 0.90969 1.06844 0.93552 1.69649 1.28290 1.40338 1.03480 0.85075 0.80094 0.74480 0.79374 1.17320 1.17747 1.19641 0.92027 0.91139 0.87422 0.76234 0.89545 0.88968 0.85767 0.91915 0.93304 0.90146 0.76779 0.80508 0.83920 0.88752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.12 113.37 1.15 1.53 16 2 O -0.33 -9.51 10.50 -96.25 -1.01 -10.52 16 3 C -0.04 -1.13 6.95 22.11 0.15 -0.97 16 4 C -0.01 -0.16 10.58 83.45 0.88 0.73 16 5 N -0.36 -8.03 4.04 -368.56 -1.49 -9.52 16 6 C 0.10 1.05 11.48 127.77 1.47 2.51 16 7 N -0.29 -9.09 12.26 -47.22 -0.58 -9.67 16 8 C 0.04 1.54 6.02 43.16 0.26 1.80 16 9 C 0.23 9.43 3.05 44.24 0.14 9.56 16 10 H 0.08 3.46 7.49 -2.39 -0.02 3.44 16 11 C -0.14 -5.06 9.47 71.98 0.68 -4.37 16 12 N -0.73 -33.07 5.06 -450.47 -2.28 -35.35 16 13 C 0.59 32.40 7.73 86.32 0.67 33.06 16 14 O -0.60 -36.17 14.11 -4.54 -0.06 -36.23 16 15 C -0.47 -25.62 6.51 24.67 0.16 -25.46 16 16 S 0.00 -0.06 22.25 -56.49 -1.26 -1.31 16 17 C -0.19 -8.37 11.07 66.64 0.74 -7.63 16 18 C -0.13 -6.42 9.04 22.61 0.20 -6.22 16 19 C 0.11 6.51 5.67 -20.89 -0.12 6.39 16 20 C -0.42 -24.22 8.52 23.33 0.20 -24.02 16 21 H 0.09 5.29 6.03 -2.91 -0.02 5.27 16 22 C 0.04 1.81 5.39 85.38 0.46 2.27 16 23 N -0.79 -39.49 10.82 21.89 0.24 -39.26 16 24 Si 0.99 39.51 29.57 68.60 2.03 41.54 16 25 H -0.25 -9.26 7.11 99.48 0.71 -8.56 16 26 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16 27 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 28 H 0.06 0.81 8.08 -2.39 -0.02 0.79 16 29 H 0.07 0.79 8.08 -2.39 -0.02 0.77 16 30 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.22 2.15 7.62 -2.91 -0.02 2.13 16 32 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 36 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.40 17.20 7.42 -92.71 -0.69 16.51 16 39 H 0.18 6.19 8.06 -2.91 -0.02 6.16 16 40 H 0.14 7.15 6.41 -2.91 -0.02 7.13 16 41 H 0.30 13.14 8.29 -92.71 -0.77 12.37 16 Total: -1.00 -77.40 366.00 3.01 -74.39 By element: Atomic # 1 Polarization: 36.35 SS G_CDS: 0.39 Total: 36.74 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: 7.04 Total: -10.82 kcal Atomic # 7 Polarization: -89.68 SS G_CDS: -4.11 Total: -93.79 kcal Atomic # 8 Polarization: -45.67 SS G_CDS: -1.08 Total: -46.75 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -1.26 Total: -1.31 kcal Total: -77.40 3.01 -74.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364293429.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.227 kcal (2) G-P(sol) polarization free energy of solvation -77.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds