Wall clock time and date at job start Tue Mar 31 2020 18:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47104 * 2 1 4 4 N 1.30501 * 125.64614 * 305.02468 * 3 2 1 5 5 C 1.34134 * 109.25259 * 179.73276 * 4 3 2 6 6 C 1.34672 * 108.01833 * 0.40156 * 5 4 3 7 7 C 1.50700 * 126.58826 * 179.87913 * 6 5 4 8 8 N 1.46502 * 109.46770 * 264.68173 * 7 6 5 9 9 S 1.65596 * 120.00221 * 164.51257 * 8 7 6 10 10 O 1.42097 * 106.40249 * 307.77347 * 9 8 7 11 11 O 1.42095 * 106.40618 * 174.85165 * 9 8 7 12 12 C 1.76206 * 107.21946 * 61.31010 * 9 8 7 13 13 C 1.37631 * 120.12894 * 244.51214 * 12 9 8 14 14 C 1.38622 * 120.24955 * 180.29629 * 13 12 9 15 15 C 1.38661 * 120.49345 * 359.43954 * 14 13 12 16 16 C 1.37591 * 120.25125 * 0.56017 * 15 14 13 17 17 C 1.40702 * 120.12370 * 64.53084 * 12 9 8 18 18 C 1.41387 * 120.24324 * 359.95611 * 17 12 9 19 19 H 1.08005 * 120.00465 * 331.94268 * 18 17 12 20 20 C 1.39947 * 119.99744 * 151.94489 * 18 17 12 21 21 N 1.30824 * 120.00316 * 347.92371 * 20 18 17 22 22 Si 1.86808 * 120.00249 * 167.92241 * 20 18 17 23 23 H 1.48502 * 109.46947 * 89.99584 * 22 20 18 24 24 H 1.48495 * 109.47339 * 210.00240 * 22 20 18 25 25 H 1.48504 * 109.46610 * 330.00152 * 22 20 18 26 26 N 1.35038 * 125.65276 * 124.99887 * 3 2 1 27 27 H 0.97007 * 126.39475 * 0.02562 * 26 3 2 28 28 H 1.09002 * 109.46929 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47518 * 299.99951 * 1 2 3 30 30 H 1.09003 * 109.47276 * 60.00161 * 1 2 3 31 31 H 1.09005 * 109.46974 * 239.99896 * 2 1 3 32 32 H 1.08993 * 109.47149 * 119.99925 * 2 1 3 33 33 H 1.08001 * 125.99064 * 180.24309 * 5 4 3 34 34 H 1.08995 * 109.47622 * 144.68317 * 7 6 5 35 35 H 1.09001 * 109.47263 * 24.67836 * 7 6 5 36 36 H 0.97005 * 120.00334 * 344.51048 * 8 7 6 37 37 H 1.07998 * 119.88077 * 0.02562 * 13 12 9 38 38 H 1.07994 * 119.74903 * 179.70472 * 14 13 12 39 39 H 1.07997 * 119.86748 * 180.29918 * 15 14 13 40 40 H 1.08005 * 120.12726 * 179.74402 * 16 15 14 41 41 H 0.96996 * 120.00749 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 1.7120 2.3407 -0.8684 5 6 2.3412 3.4831 -0.5550 6 6 3.0864 3.2602 0.5444 7 6 3.9645 4.2597 1.2522 8 7 5.3424 4.1245 0.7733 9 16 6.4454 5.3221 1.0756 10 8 5.8537 6.5345 0.6292 11 8 7.6960 4.8457 0.5980 12 6 6.6003 5.4590 2.8254 13 6 6.2123 6.6142 3.4651 14 6 6.3389 6.7268 4.8409 15 6 6.8458 5.6754 5.5893 16 6 7.2400 4.5112 4.9710 17 6 7.1216 4.3877 3.5741 18 6 7.5230 3.1960 2.9278 19 1 7.0533 2.8994 2.0016 20 6 8.5288 2.4007 3.4884 21 7 9.2591 2.8647 4.4696 22 14 8.8288 0.6763 2.8355 23 1 9.8271 0.7295 1.7374 24 1 9.3427 -0.1851 3.9304 25 1 7.5549 0.1139 2.3195 26 7 2.8881 1.9531 0.8988 27 1 3.2877 1.4947 1.6546 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.2657 4.4172 -1.0919 34 1 3.9332 4.0747 2.3259 35 1 3.6057 5.2683 1.0467 36 1 5.6087 3.3334 0.2791 37 1 5.8118 7.4377 2.8926 38 1 6.0363 7.6388 5.3340 39 1 6.9355 5.7723 6.6612 40 1 7.6385 3.6950 5.5554 41 1 9.9565 2.3137 4.8579 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364966150.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:29 Heat of formation + Delta-G solvation = -12.981633 kcal Electronic energy + Delta-G solvation = -26669.969626 eV Core-core repulsion = 22869.872742 eV Total energy + Delta-G solvation = -3800.096883 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.11755 -37.67406 -36.30059 -35.32162 -34.89118 -33.98283 -33.63918 -32.40967 -30.31910 -29.64234 -29.13512 -25.67541 -25.31615 -23.61647 -21.74127 -21.24060 -21.07907 -20.27686 -18.72631 -17.78927 -17.67169 -16.84843 -16.17470 -15.77367 -15.46137 -15.12971 -14.64025 -14.39652 -14.29878 -14.14375 -13.45359 -13.38924 -13.29017 -13.09306 -12.92259 -12.83207 -12.46800 -11.98099 -11.75075 -11.60962 -11.37669 -11.35598 -11.28596 -11.25106 -11.12508 -11.07260 -10.78793 -10.60663 -10.06055 -9.99368 -9.98468 -9.53263 -9.51463 -8.89057 -8.31709 -8.10563 -7.68807 -7.11872 -4.85451 1.37819 2.03140 2.25986 2.65456 2.88092 2.90017 3.03626 3.04784 3.10304 3.67653 3.94924 4.31152 4.32662 4.63689 4.74867 4.85828 5.04440 5.14488 5.20186 5.28824 5.51769 5.55325 5.60342 5.63500 5.66401 5.87014 5.98009 6.04505 6.12842 6.17347 6.30825 6.35205 6.68523 6.75345 6.87338 7.00372 7.22099 7.35130 7.38949 7.43405 7.58469 7.73732 7.80610 8.06070 8.20116 8.40745 8.56648 9.80961 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010379 B = 0.004503 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.221611 B = 6216.031064 C = 7462.056792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.037 4.037 3 C 0.208 3.792 4 N -0.489 5.489 5 C -0.007 4.007 6 C -0.026 4.026 7 C 0.201 3.799 8 N -1.121 6.121 9 S 2.700 3.300 10 O -0.995 6.995 11 O -0.962 6.962 12 C -0.777 4.777 13 C -0.003 4.003 14 C -0.249 4.249 15 C -0.076 4.076 16 C -0.160 4.160 17 C 0.186 3.814 18 C -0.447 4.447 19 H 0.086 0.914 20 C 0.081 3.919 21 N -0.774 5.774 22 Si 0.915 3.085 23 H -0.261 1.261 24 H -0.273 1.273 25 H -0.259 1.259 26 N -0.557 5.557 27 H 0.421 0.579 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.172 0.828 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.412 0.588 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.125 0.875 41 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.886 -6.490 -2.260 12.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.076 4.076 3 C -0.056 4.056 4 N -0.209 5.209 5 C -0.157 4.157 6 C -0.143 4.143 7 C 0.074 3.926 8 N -0.877 5.877 9 S 2.798 3.202 10 O -0.985 6.985 11 O -0.953 6.953 12 C -0.872 4.872 13 C -0.022 4.022 14 C -0.270 4.270 15 C -0.095 4.095 16 C -0.179 4.179 17 C 0.182 3.818 18 C -0.475 4.475 19 H 0.104 0.896 20 C -0.141 4.141 21 N -0.397 5.397 22 Si 0.738 3.262 23 H -0.186 1.186 24 H -0.197 1.197 25 H -0.182 1.182 26 N -0.160 5.160 27 H 0.259 0.741 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.190 0.810 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.245 0.755 37 H 0.127 0.873 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.143 0.857 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.837 -5.958 -3.379 12.820 hybrid contribution 1.137 -1.235 1.547 2.283 sum -9.700 -7.193 -1.831 12.214 Atomic orbital electron populations 1.21668 0.93500 1.01798 1.03048 1.19939 0.97057 0.87147 1.03430 1.23231 0.95323 0.97561 0.89472 1.70204 1.25325 0.99779 1.25605 1.22208 0.98987 0.97842 0.96622 1.21230 1.05820 0.85824 1.01445 1.19443 0.79389 0.96724 0.97093 1.55834 1.20903 1.39095 1.71893 1.01122 0.72272 0.71839 0.74955 1.93454 1.78574 1.44882 1.81620 1.93552 1.40231 1.80523 1.80953 1.29848 1.31605 1.03424 1.22313 1.20272 0.93084 0.94389 0.94503 1.20511 1.12937 0.99558 0.93983 1.20917 0.96638 0.94154 0.97744 1.21510 1.03650 0.97947 0.94836 1.16993 0.84025 0.89140 0.91671 1.19829 1.16196 1.04411 1.07110 0.89620 1.25944 0.94181 1.00396 0.93553 1.69772 1.13821 1.37050 1.19065 0.86185 0.80202 0.80127 0.79696 1.18593 1.19729 1.18242 1.43200 1.36861 1.10494 1.25492 0.74068 0.92061 0.92722 0.91313 0.89306 0.90508 0.81038 0.90768 0.88314 0.75539 0.87280 0.88659 0.88796 0.85740 0.90055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.87 37.16 0.37 -0.75 16 2 C -0.04 -0.31 6.56 -27.88 -0.18 -0.49 16 3 C 0.21 2.52 7.43 -155.42 -1.16 1.36 16 4 N -0.49 -7.01 11.21 -10.81 -0.12 -7.13 16 5 C -0.01 -0.10 11.79 -17.81 -0.21 -0.31 16 6 C -0.03 -0.35 6.64 -81.60 -0.54 -0.89 16 7 C 0.20 2.87 6.73 -5.19 -0.03 2.84 16 8 N -1.12 -18.67 5.03 -11.66 -0.06 -18.73 16 9 S 2.70 56.80 4.94 -107.50 -0.53 56.27 16 10 O -0.99 -21.79 16.56 -57.18 -0.95 -22.74 16 11 O -0.96 -23.44 16.60 -57.18 -0.95 -24.38 16 12 C -0.78 -17.74 5.86 -38.87 -0.23 -17.97 16 13 C 0.00 -0.06 9.53 -39.66 -0.38 -0.43 16 14 C -0.25 -5.25 10.05 -39.28 -0.39 -5.65 16 15 C -0.08 -1.63 10.02 -39.66 -0.40 -2.03 16 16 C -0.16 -3.79 8.66 -38.88 -0.34 -4.12 16 17 C 0.19 4.53 5.55 -106.83 -0.59 3.94 16 18 C -0.45 -10.69 7.67 -37.74 -0.29 -10.98 16 19 H 0.09 1.90 5.78 -52.48 -0.30 1.60 16 20 C 0.08 1.87 5.23 -17.34 -0.09 1.78 16 21 N -0.77 -18.43 10.87 55.55 0.60 -17.82 16 22 Si 0.91 17.26 29.58 -169.99 -5.03 12.23 16 23 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 24 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 25 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 26 N -0.56 -6.57 6.15 -6.54 -0.04 -6.61 16 27 H 0.42 4.09 8.96 -40.82 -0.37 3.73 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.17 2.12 8.06 -52.49 -0.42 1.70 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.10 1.35 7.83 -51.93 -0.41 0.94 16 36 H 0.41 6.39 8.50 -34.46 -0.29 6.10 16 37 H 0.11 2.19 7.33 -52.49 -0.38 1.80 16 38 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.12 2.98 6.22 -52.48 -0.33 2.66 16 41 H 0.29 6.17 8.30 -40.82 -0.34 5.83 16 LS Contribution 359.81 15.07 5.42 5.42 Total: -1.00 -31.33 359.81 -11.14 -42.47 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.75 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: -4.47 Total: -33.71 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 0.38 Total: -50.30 kcal Atomic # 8 Polarization: -45.23 SS G_CDS: -1.90 Total: -47.12 kcal Atomic # 14 Polarization: 17.26 SS G_CDS: -5.03 Total: 12.23 kcal Atomic # 16 Polarization: 56.80 SS G_CDS: -0.53 Total: 56.27 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.33 -11.14 -42.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364966150.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.488 kcal (2) G-P(sol) polarization free energy of solvation -31.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds