Wall clock time and date at job start Tue Mar 31 2020 18:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47104 * 2 1 4 4 N 1.30501 * 125.64614 * 305.02468 * 3 2 1 5 5 C 1.34134 * 109.25259 * 179.73276 * 4 3 2 6 6 C 1.34672 * 108.01833 * 0.40156 * 5 4 3 7 7 C 1.50700 * 126.58826 * 179.87913 * 6 5 4 8 8 N 1.46502 * 109.46770 * 264.68173 * 7 6 5 9 9 S 1.65596 * 120.00221 * 164.51257 * 8 7 6 10 10 O 1.42097 * 106.40249 * 307.77347 * 9 8 7 11 11 O 1.42095 * 106.40618 * 174.85165 * 9 8 7 12 12 C 1.76206 * 107.21946 * 61.31010 * 9 8 7 13 13 C 1.37631 * 120.12894 * 244.51214 * 12 9 8 14 14 C 1.38622 * 120.24955 * 180.29629 * 13 12 9 15 15 C 1.38661 * 120.49345 * 359.43954 * 14 13 12 16 16 C 1.37591 * 120.25125 * 0.56017 * 15 14 13 17 17 C 1.40702 * 120.12370 * 64.53084 * 12 9 8 18 18 C 1.41387 * 120.24324 * 359.95611 * 17 12 9 19 19 H 1.08005 * 120.00465 * 331.94268 * 18 17 12 20 20 C 1.39947 * 119.99744 * 151.94489 * 18 17 12 21 21 N 1.30824 * 120.00316 * 347.92371 * 20 18 17 22 22 Si 1.86808 * 120.00249 * 167.92241 * 20 18 17 23 23 H 1.48502 * 109.46947 * 89.99584 * 22 20 18 24 24 H 1.48495 * 109.47339 * 210.00240 * 22 20 18 25 25 H 1.48504 * 109.46610 * 330.00152 * 22 20 18 26 26 N 1.35038 * 125.65276 * 124.99887 * 3 2 1 27 27 H 0.97007 * 126.39475 * 0.02562 * 26 3 2 28 28 H 1.09002 * 109.46929 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47518 * 299.99951 * 1 2 3 30 30 H 1.09003 * 109.47276 * 60.00161 * 1 2 3 31 31 H 1.09005 * 109.46974 * 239.99896 * 2 1 3 32 32 H 1.08993 * 109.47149 * 119.99925 * 2 1 3 33 33 H 1.08001 * 125.99064 * 180.24309 * 5 4 3 34 34 H 1.08995 * 109.47622 * 144.68317 * 7 6 5 35 35 H 1.09001 * 109.47263 * 24.67836 * 7 6 5 36 36 H 0.97005 * 120.00334 * 344.51048 * 8 7 6 37 37 H 1.07998 * 119.88077 * 0.02562 * 13 12 9 38 38 H 1.07994 * 119.74903 * 179.70472 * 14 13 12 39 39 H 1.07997 * 119.86748 * 180.29918 * 15 14 13 40 40 H 1.08005 * 120.12726 * 179.74402 * 16 15 14 41 41 H 0.96996 * 120.00749 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 1.7120 2.3407 -0.8684 5 6 2.3412 3.4831 -0.5550 6 6 3.0864 3.2602 0.5444 7 6 3.9645 4.2597 1.2522 8 7 5.3424 4.1245 0.7733 9 16 6.4454 5.3221 1.0756 10 8 5.8537 6.5345 0.6292 11 8 7.6960 4.8457 0.5980 12 6 6.6003 5.4590 2.8254 13 6 6.2123 6.6142 3.4651 14 6 6.3389 6.7268 4.8409 15 6 6.8458 5.6754 5.5893 16 6 7.2400 4.5112 4.9710 17 6 7.1216 4.3877 3.5741 18 6 7.5230 3.1960 2.9278 19 1 7.0533 2.8994 2.0016 20 6 8.5288 2.4007 3.4884 21 7 9.2591 2.8647 4.4696 22 14 8.8288 0.6763 2.8355 23 1 9.8271 0.7295 1.7374 24 1 9.3427 -0.1851 3.9304 25 1 7.5549 0.1139 2.3195 26 7 2.8881 1.9531 0.8988 27 1 3.2877 1.4947 1.6546 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.2657 4.4172 -1.0919 34 1 3.9332 4.0747 2.3259 35 1 3.6057 5.2683 1.0467 36 1 5.6087 3.3334 0.2791 37 1 5.8118 7.4377 2.8926 38 1 6.0363 7.6388 5.3340 39 1 6.9355 5.7723 6.6612 40 1 7.6385 3.6950 5.5554 41 1 9.9565 2.3137 4.8579 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364966150.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:29 Heat of formation + Delta-G solvation = -33.836591 kcal Electronic energy + Delta-G solvation = -26670.873964 eV Core-core repulsion = 22869.872742 eV Total energy + Delta-G solvation = -3801.001222 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.10299 -39.38650 -38.05505 -36.67848 -36.56054 -35.67474 -34.44562 -33.41849 -32.03904 -31.36034 -30.20768 -27.37686 -26.38393 -24.45675 -23.44903 -22.94967 -22.11110 -21.22667 -20.29335 -19.51267 -18.81203 -18.42230 -17.69842 -17.25423 -16.96025 -16.25157 -16.06160 -15.76529 -15.44294 -15.16262 -15.05678 -14.92444 -14.48233 -14.36809 -14.26024 -14.01232 -13.68223 -13.33205 -13.21740 -13.00533 -12.95045 -12.86558 -12.81071 -12.76120 -12.47958 -12.38816 -12.15258 -12.00756 -11.66185 -11.25507 -11.20084 -11.03394 -10.98107 -10.31550 -9.84949 -9.43844 -9.32081 -8.81073 -6.62786 -0.23535 0.52610 0.97147 0.98588 1.34444 1.46298 1.50032 2.06246 2.12769 2.12899 2.43800 2.63155 2.97096 3.45592 3.47827 3.73389 3.91038 4.05418 4.22816 4.34818 4.38336 4.40638 4.46227 4.50841 4.70709 4.71419 4.80591 4.82157 4.99666 5.04070 5.14832 5.16299 5.26812 5.29655 5.41401 5.51296 5.71028 5.75037 5.81578 6.01273 6.06743 6.09815 6.46761 6.47034 6.66011 6.83101 7.07580 8.14743 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010379 B = 0.004503 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.221611 B = 6216.031064 C = 7462.056792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.038 4.038 3 C 0.215 3.785 4 N -0.520 5.520 5 C -0.018 4.018 6 C -0.034 4.034 7 C 0.201 3.799 8 N -1.109 6.109 9 S 2.722 3.278 10 O -1.005 7.005 11 O -0.999 6.999 12 C -0.791 4.791 13 C -0.015 4.015 14 C -0.250 4.250 15 C -0.075 4.075 16 C -0.186 4.186 17 C 0.164 3.836 18 C -0.474 4.474 19 H 0.094 0.906 20 C 0.040 3.960 21 N -0.807 5.807 22 Si 0.973 3.027 23 H -0.271 1.271 24 H -0.260 1.260 25 H -0.241 1.241 26 N -0.553 5.553 27 H 0.431 0.569 28 H 0.084 0.916 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.180 0.820 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.418 0.582 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.121 0.879 40 H 0.114 0.886 41 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.993 -7.697 -2.057 14.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.077 4.077 3 C -0.050 4.050 4 N -0.240 5.240 5 C -0.168 4.168 6 C -0.151 4.151 7 C 0.074 3.926 8 N -0.869 5.869 9 S 2.819 3.181 10 O -0.995 6.995 11 O -0.990 6.990 12 C -0.885 4.885 13 C -0.034 4.034 14 C -0.271 4.271 15 C -0.094 4.094 16 C -0.206 4.206 17 C 0.159 3.841 18 C -0.502 4.502 19 H 0.111 0.889 20 C -0.178 4.178 21 N -0.431 5.431 22 Si 0.793 3.207 23 H -0.196 1.196 24 H -0.184 1.184 25 H -0.163 1.163 26 N -0.157 5.157 27 H 0.271 0.729 28 H 0.102 0.898 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.197 0.803 34 H 0.097 0.903 35 H 0.123 0.877 36 H 0.253 0.747 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.139 0.861 40 H 0.132 0.868 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.948 -7.156 -3.142 14.277 hybrid contribution 1.395 -0.783 1.492 2.188 sum -10.552 -7.939 -1.650 13.308 Atomic orbital electron populations 1.21633 0.93041 1.02970 1.01945 1.20164 0.97359 0.85127 1.05047 1.23941 0.94134 0.98526 0.88389 1.70223 1.26468 1.00391 1.26926 1.22473 0.99077 0.98359 0.96873 1.20997 1.06059 0.86428 1.01600 1.19546 0.78027 0.97617 0.97384 1.55448 1.21275 1.38457 1.71678 1.00322 0.71827 0.71941 0.74046 1.93433 1.78632 1.45931 1.81539 1.93496 1.42847 1.81228 1.81404 1.30100 1.31544 1.03614 1.23243 1.20595 0.93051 0.94510 0.95289 1.20904 1.11823 1.00459 0.93865 1.21254 0.95384 0.93459 0.99295 1.21569 1.05287 0.98805 0.94963 1.17286 0.84651 0.89894 0.92239 1.20126 1.17078 1.05106 1.07864 0.88853 1.26790 0.93616 1.03807 0.93635 1.69816 1.14506 1.38533 1.20228 0.85319 0.80492 0.75858 0.79036 1.19607 1.18395 1.16348 1.43209 1.36731 1.09970 1.25774 0.72896 0.89757 0.93265 0.92951 0.88419 0.88087 0.80300 0.90348 0.87657 0.74712 0.85765 0.85551 0.86114 0.86777 0.89390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.87 71.98 0.71 -1.18 16 2 C -0.04 -0.55 6.56 29.85 0.20 -0.36 16 3 C 0.21 4.83 7.43 138.13 1.03 5.85 16 4 N -0.52 -14.39 11.21 -188.13 -2.11 -16.50 16 5 C -0.02 -0.50 11.79 83.52 0.98 0.49 16 6 C -0.03 -0.86 6.64 40.95 0.27 -0.59 16 7 C 0.20 5.56 6.73 85.63 0.58 6.13 16 8 N -1.11 -36.30 5.03 -190.79 -0.96 -37.26 16 9 S 2.72 114.21 4.94 -56.49 -0.28 113.93 16 10 O -1.01 -43.48 16.56 -128.00 -2.12 -45.60 16 11 O -1.00 -49.21 16.60 -128.00 -2.13 -51.34 16 12 C -0.79 -36.05 5.86 22.73 0.13 -35.92 16 13 C -0.01 -0.63 9.53 22.22 0.21 -0.42 16 14 C -0.25 -10.09 10.05 22.46 0.23 -9.87 16 15 C -0.08 -3.17 10.02 22.22 0.22 -2.95 16 16 C -0.19 -8.90 8.66 22.73 0.20 -8.71 16 17 C 0.16 8.03 5.55 -21.29 -0.12 7.91 16 18 C -0.47 -22.81 7.67 23.46 0.18 -22.63 16 19 H 0.09 4.15 5.78 -2.91 -0.02 4.14 16 20 C 0.04 1.84 5.23 85.26 0.45 2.29 16 21 N -0.81 -38.97 10.87 21.83 0.24 -38.73 16 22 Si 0.97 34.76 29.58 68.60 2.03 36.79 16 23 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 24 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 25 H -0.24 -7.80 7.11 99.48 0.71 -7.09 16 26 N -0.55 -12.14 6.15 -174.61 -1.07 -13.21 16 27 H 0.43 7.55 8.96 -92.70 -0.83 6.71 16 28 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.18 4.33 8.06 -2.91 -0.02 4.31 16 34 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.11 2.78 7.83 -2.39 -0.02 2.76 16 36 H 0.42 12.71 8.50 -96.74 -0.82 11.89 16 37 H 0.12 4.81 7.33 -2.91 -0.02 4.79 16 38 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 39 H 0.12 4.31 8.06 -2.91 -0.02 4.29 16 40 H 0.11 5.59 6.22 -2.91 -0.02 5.57 16 41 H 0.30 12.78 8.30 -92.71 -0.77 12.01 16 Total: -1.00 -67.13 359.81 -1.70 -68.84 By element: Atomic # 1 Polarization: 43.58 SS G_CDS: -0.56 Total: 43.02 kcal Atomic # 6 Polarization: -65.21 SS G_CDS: 5.26 Total: -59.95 kcal Atomic # 7 Polarization: -101.79 SS G_CDS: -3.91 Total: -105.70 kcal Atomic # 8 Polarization: -92.69 SS G_CDS: -4.25 Total: -96.93 kcal Atomic # 14 Polarization: 34.76 SS G_CDS: 2.03 Total: 36.79 kcal Atomic # 16 Polarization: 114.21 SS G_CDS: -0.28 Total: 113.93 kcal Total: -67.13 -1.70 -68.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364966150.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.000 kcal (2) G-P(sol) polarization free energy of solvation -67.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds