Wall clock time and date at job start Tue Mar 31 2020 18:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34477 * 126.16258 * 2 1 4 4 C 1.30251 * 108.69890 * 179.97438 * 3 2 1 5 5 O 1.33968 * 108.76124 * 359.97438 * 4 3 2 6 6 C 1.34324 * 126.16382 * 179.97438 * 2 1 3 7 7 C 1.50696 * 126.44769 * 0.02562 * 6 2 1 8 8 N 1.46503 * 109.47114 * 90.00047 * 7 6 2 9 9 C 1.34775 * 119.99992 * 180.02562 * 8 7 6 10 10 O 1.21589 * 120.00300 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99932 * 180.02562 * 9 8 7 12 12 C 1.40133 * 120.00184 * 175.62485 * 11 9 8 13 13 C 1.38699 * 120.07174 * 34.59503 * 12 11 9 14 14 C 1.38201 * 120.01506 * 179.69775 * 13 12 11 15 15 C 1.38541 * 120.17837 * 0.60045 * 14 13 12 16 16 F 1.35098 * 119.92515 * 179.70046 * 15 14 13 17 17 C 1.38344 * 120.14854 * 359.67731 * 15 14 13 18 18 C 1.38742 * 119.97871 * 0.02562 * 17 15 14 19 19 O 1.35777 * 120.08878 * 180.02562 * 18 17 15 20 20 C 1.34814 * 116.99755 * 5.43759 * 19 18 17 21 21 H 1.08002 * 120.00289 * 354.94850 * 20 19 18 22 22 C 1.38638 * 119.99620 * 174.95310 * 20 19 18 23 23 N 1.31570 * 120.00193 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99726 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46987 * 59.99920 * 24 22 20 26 26 H 1.48502 * 109.47270 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47213 * 300.00216 * 24 22 20 28 28 H 1.09009 * 109.47468 * 90.02897 * 1 2 3 29 29 H 1.08999 * 109.47558 * 210.02868 * 1 2 3 30 30 H 1.09003 * 109.47431 * 330.02732 * 1 2 3 31 31 H 1.08006 * 125.62317 * 179.97438 * 4 3 2 32 32 H 1.09003 * 109.47661 * 210.00187 * 7 6 2 33 33 H 1.09003 * 109.46973 * 330.00366 * 7 6 2 34 34 H 0.96998 * 119.99713 * 359.97438 * 8 7 6 35 35 H 0.97002 * 119.99539 * 355.61798 * 11 9 8 36 36 H 1.07999 * 119.99089 * 359.97438 * 13 12 11 37 37 H 1.08000 * 119.90817 * 180.29426 * 14 13 12 38 38 H 1.07999 * 120.01014 * 180.02562 * 17 15 14 39 39 H 0.97003 * 119.99892 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0857 0.0000 4 6 3.5430 0.6948 0.0006 5 8 3.5733 -0.6445 0.0015 6 6 2.2996 -1.0844 0.0005 7 6 1.8493 -2.5225 0.0006 8 7 1.7038 -2.9888 -1.3806 9 6 1.3074 -4.2532 -1.6268 10 8 1.0710 -5.0071 -0.7026 11 7 1.1741 -4.6823 -2.8975 12 6 0.8513 -6.0215 -3.1546 13 6 0.0096 -6.7110 -2.2945 14 6 -0.3130 -8.0298 -2.5526 15 6 0.2122 -8.6708 -3.6628 16 9 -0.1017 -9.9620 -3.9069 17 6 1.0571 -7.9916 -4.5223 18 6 1.3803 -6.6657 -4.2727 19 8 2.2088 -5.9967 -5.1151 20 6 2.5935 -6.6413 -6.2349 21 1 2.3102 -7.6720 -6.3892 22 6 3.3528 -5.9809 -7.1885 23 7 3.6976 -4.7251 -7.0008 24 14 3.8865 -6.8742 -8.7399 25 1 2.6862 -7.3274 -9.4878 26 1 4.6819 -5.9542 -9.5920 27 1 4.7149 -8.0509 -8.3734 28 1 -0.3634 -0.0005 -1.0277 29 1 -0.3634 -0.8897 0.5143 30 1 -0.3634 0.8902 0.5134 31 1 4.4065 1.3435 0.0003 32 1 2.5898 -3.1352 0.5148 33 1 0.8911 -2.6032 0.5140 34 1 1.8921 -2.3873 -2.1179 35 1 1.3016 -4.0641 -3.6340 36 1 -0.3974 -6.2158 -1.4253 37 1 -0.9724 -8.5636 -1.8843 38 1 1.4649 -8.4934 -5.3874 39 1 4.2286 -4.2630 -7.6683 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365491864.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:40 Heat of formation + Delta-G solvation = -43.578694 kcal Electronic energy + Delta-G solvation = -27715.443438 eV Core-core repulsion = 23347.806591 eV Total energy + Delta-G solvation = -4367.636848 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.111 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.25737 -43.64386 -40.29298 -38.82996 -36.53642 -35.53619 -35.05429 -34.09766 -32.42976 -31.91684 -29.48722 -28.98992 -27.83967 -25.79729 -25.47804 -22.72407 -22.37164 -21.71553 -21.08849 -20.61041 -18.51421 -18.33265 -17.87226 -17.25633 -16.99986 -16.65678 -15.78140 -15.49047 -15.25162 -15.06098 -15.00175 -14.72958 -14.46006 -14.29704 -13.73007 -13.57871 -13.54525 -13.49583 -13.36066 -13.24642 -12.82377 -12.33738 -12.32764 -12.15515 -11.68546 -11.37011 -11.28673 -10.96892 -10.82630 -10.76044 -10.58713 -10.02021 -9.79677 -9.52746 -9.17421 -9.05339 -8.97481 -7.89050 -7.13058 -6.62213 -4.20310 1.03179 1.83653 2.11539 2.31187 2.42938 2.95753 3.06319 3.06858 3.09388 3.37519 3.83596 3.84977 4.33268 4.36616 4.42002 4.54421 4.84921 4.90803 4.94354 5.10801 5.17276 5.30964 5.42376 5.46870 5.57797 5.67800 5.73352 5.80258 6.01595 6.04878 6.17188 6.30458 6.56555 6.65442 6.89582 6.91252 7.04589 7.08472 7.24712 7.40277 7.64466 7.81694 8.15931 8.74140 8.83934 9.44822 10.54680 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010305 B = 0.003190 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.468168 B = 8775.419546 C =11086.176063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.013 3.987 3 N -0.490 5.490 4 C 0.182 3.818 5 O -0.196 6.196 6 C -0.069 4.069 7 C 0.231 3.769 8 N -0.745 5.745 9 C 0.708 3.292 10 O -0.583 6.583 11 N -0.661 5.661 12 C 0.076 3.924 13 C -0.049 4.049 14 C -0.229 4.229 15 C 0.129 3.871 16 F -0.151 7.151 17 C -0.258 4.258 18 C 0.158 3.842 19 O -0.168 6.168 20 C -0.393 4.393 21 H 0.094 0.906 22 C 0.044 3.956 23 N -0.860 5.860 24 Si 0.942 3.058 25 H -0.268 1.268 26 H -0.277 1.277 27 H -0.269 1.269 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.252 0.748 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.401 0.599 35 H 0.412 0.588 36 H 0.143 0.857 37 H 0.123 0.877 38 H 0.143 0.857 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.467 8.461 10.720 14.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.108 4.108 3 N -0.219 5.219 4 C -0.044 4.044 5 O -0.081 6.081 6 C -0.122 4.122 7 C 0.107 3.893 8 N -0.403 5.403 9 C 0.409 3.591 10 O -0.462 6.462 11 N -0.308 5.308 12 C -0.019 4.019 13 C -0.070 4.070 14 C -0.249 4.249 15 C 0.109 3.891 16 F -0.130 7.130 17 C -0.279 4.279 18 C 0.101 3.899 19 O -0.071 6.071 20 C -0.469 4.469 21 H 0.111 0.889 22 C -0.161 4.161 23 N -0.494 5.494 24 Si 0.766 3.234 25 H -0.193 1.193 26 H -0.202 1.202 27 H -0.194 1.194 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.267 0.733 32 H 0.104 0.896 33 H 0.119 0.881 34 H 0.235 0.765 35 H 0.248 0.752 36 H 0.161 0.839 37 H 0.141 0.859 38 H 0.160 0.840 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.562 8.773 11.446 14.855 hybrid contribution 0.970 -0.619 -1.618 1.986 sum -2.592 8.155 9.828 13.031 Atomic orbital electron populations 1.20210 0.86153 1.03560 1.03410 1.21642 0.98156 0.87431 1.03564 1.70420 1.01418 1.31619 1.18459 1.28124 0.97620 0.79346 0.99331 1.84482 1.29932 1.24564 1.69141 1.23081 0.81095 0.97559 1.10492 1.19273 1.01946 0.84323 0.83773 1.45059 1.74506 1.12703 1.08019 1.15765 0.78274 0.81519 0.83527 1.90889 1.57546 1.54451 1.43279 1.42149 1.72281 1.09943 1.06440 1.16636 1.03129 0.83999 0.98161 1.20671 0.94500 0.93433 0.98354 1.20487 1.08401 0.96204 0.99808 1.17463 0.97740 0.78102 0.95782 1.91411 1.91678 1.35568 1.94373 1.20843 1.07135 0.95539 1.04416 1.18816 0.89859 0.89876 0.91299 1.83934 1.52965 1.40520 1.29659 1.21311 1.33941 0.97132 0.94536 0.88854 1.25274 0.96186 0.95871 0.98800 1.69999 1.34613 1.09537 1.35280 0.85754 0.79097 0.78822 0.79701 1.19327 1.20199 1.19359 0.90233 0.90332 0.90441 0.73270 0.89556 0.88074 0.76454 0.75232 0.83901 0.85920 0.83968 0.91792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.22 36.00 0.37 -0.25 16 2 C 0.01 0.14 7.11 -82.82 -0.59 -0.45 16 3 N -0.49 -5.45 11.29 -11.18 -0.13 -5.57 16 4 C 0.18 1.61 13.23 52.09 0.69 2.30 16 5 O -0.20 -2.12 10.78 5.36 0.06 -2.06 16 6 C -0.07 -0.74 6.75 -35.69 -0.24 -0.98 16 7 C 0.23 2.53 6.01 -5.19 -0.03 2.50 16 8 N -0.75 -9.51 5.55 -66.41 -0.37 -9.88 16 9 C 0.71 11.74 8.41 -86.92 -0.73 11.01 16 10 O -0.58 -11.04 13.76 5.29 0.07 -10.96 16 11 N -0.66 -11.85 5.20 -14.07 -0.07 -11.92 16 12 C 0.08 1.54 6.33 -83.44 -0.53 1.01 16 13 C -0.05 -0.92 8.70 -39.42 -0.34 -1.26 16 14 C -0.23 -4.17 10.02 -39.48 -0.40 -4.57 16 15 C 0.13 2.55 7.29 -39.43 -0.29 2.26 16 16 F -0.15 -2.87 17.26 2.25 0.04 -2.83 16 17 C -0.26 -5.58 9.14 -39.36 -0.36 -5.94 16 18 C 0.16 3.59 6.66 -38.94 -0.26 3.33 16 19 O -0.17 -4.34 9.32 0.01 0.00 -4.34 16 20 C -0.39 -10.28 9.49 30.88 0.29 -9.99 16 21 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 22 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 23 N -0.86 -23.29 13.67 55.48 0.76 -22.53 16 24 Si 0.94 19.54 29.55 -169.99 -5.02 14.52 16 25 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 26 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 27 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 28 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.08 0.54 7.17 -51.93 -0.37 0.17 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.25 0.94 8.06 -52.48 -0.42 0.52 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.10 0.98 7.17 -51.93 -0.37 0.61 16 34 H 0.40 4.66 8.48 -40.82 -0.35 4.32 16 35 H 0.41 7.05 8.59 -40.82 -0.35 6.70 16 36 H 0.14 2.58 6.19 -52.49 -0.32 2.25 16 37 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 38 H 0.14 3.07 5.64 -52.49 -0.30 2.77 16 39 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 349.84 15.07 5.27 5.27 Total: -1.00 -31.85 349.84 -5.49 -37.34 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -3.58 Total: 12.99 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -2.51 Total: -0.02 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: 0.19 Total: -49.90 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: 0.13 Total: -17.36 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.04 Total: -2.83 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.85 -5.49 -37.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365491864.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.241 kcal (2) G-P(sol) polarization free energy of solvation -31.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds