Wall clock time and date at job start Tue Mar 31 2020 18:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34477 * 126.16258 * 2 1 4 4 C 1.30251 * 108.69890 * 179.97438 * 3 2 1 5 5 O 1.33968 * 108.76124 * 359.97438 * 4 3 2 6 6 C 1.34324 * 126.16382 * 179.97438 * 2 1 3 7 7 C 1.50696 * 126.44769 * 0.02562 * 6 2 1 8 8 N 1.46503 * 109.47114 * 90.00047 * 7 6 2 9 9 C 1.34775 * 119.99992 * 180.02562 * 8 7 6 10 10 O 1.21589 * 120.00300 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99932 * 180.02562 * 9 8 7 12 12 C 1.40133 * 120.00184 * 175.62485 * 11 9 8 13 13 C 1.38699 * 120.07174 * 34.59503 * 12 11 9 14 14 C 1.38201 * 120.01506 * 179.69775 * 13 12 11 15 15 C 1.38541 * 120.17837 * 0.60045 * 14 13 12 16 16 F 1.35098 * 119.92515 * 179.70046 * 15 14 13 17 17 C 1.38344 * 120.14854 * 359.67731 * 15 14 13 18 18 C 1.38742 * 119.97871 * 0.02562 * 17 15 14 19 19 O 1.35777 * 120.08878 * 180.02562 * 18 17 15 20 20 C 1.34814 * 116.99755 * 5.43759 * 19 18 17 21 21 H 1.08002 * 120.00289 * 354.94850 * 20 19 18 22 22 C 1.38638 * 119.99620 * 174.95310 * 20 19 18 23 23 N 1.31570 * 120.00193 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99726 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46987 * 59.99920 * 24 22 20 26 26 H 1.48502 * 109.47270 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47213 * 300.00216 * 24 22 20 28 28 H 1.09009 * 109.47468 * 90.02897 * 1 2 3 29 29 H 1.08999 * 109.47558 * 210.02868 * 1 2 3 30 30 H 1.09003 * 109.47431 * 330.02732 * 1 2 3 31 31 H 1.08006 * 125.62317 * 179.97438 * 4 3 2 32 32 H 1.09003 * 109.47661 * 210.00187 * 7 6 2 33 33 H 1.09003 * 109.46973 * 330.00366 * 7 6 2 34 34 H 0.96998 * 119.99713 * 359.97438 * 8 7 6 35 35 H 0.97002 * 119.99539 * 355.61798 * 11 9 8 36 36 H 1.07999 * 119.99089 * 359.97438 * 13 12 11 37 37 H 1.08000 * 119.90817 * 180.29426 * 14 13 12 38 38 H 1.07999 * 120.01014 * 180.02562 * 17 15 14 39 39 H 0.97003 * 119.99892 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0857 0.0000 4 6 3.5430 0.6948 0.0006 5 8 3.5733 -0.6445 0.0015 6 6 2.2996 -1.0844 0.0005 7 6 1.8493 -2.5225 0.0006 8 7 1.7038 -2.9888 -1.3806 9 6 1.3074 -4.2532 -1.6268 10 8 1.0710 -5.0071 -0.7026 11 7 1.1741 -4.6823 -2.8975 12 6 0.8513 -6.0215 -3.1546 13 6 0.0096 -6.7110 -2.2945 14 6 -0.3130 -8.0298 -2.5526 15 6 0.2122 -8.6708 -3.6628 16 9 -0.1017 -9.9620 -3.9069 17 6 1.0571 -7.9916 -4.5223 18 6 1.3803 -6.6657 -4.2727 19 8 2.2088 -5.9967 -5.1151 20 6 2.5935 -6.6413 -6.2349 21 1 2.3102 -7.6720 -6.3892 22 6 3.3528 -5.9809 -7.1885 23 7 3.6976 -4.7251 -7.0008 24 14 3.8865 -6.8742 -8.7399 25 1 2.6862 -7.3274 -9.4878 26 1 4.6819 -5.9542 -9.5920 27 1 4.7149 -8.0509 -8.3734 28 1 -0.3634 -0.0005 -1.0277 29 1 -0.3634 -0.8897 0.5143 30 1 -0.3634 0.8902 0.5134 31 1 4.4065 1.3435 0.0003 32 1 2.5898 -3.1352 0.5148 33 1 0.8911 -2.6032 0.5140 34 1 1.8921 -2.3873 -2.1179 35 1 1.3016 -4.0641 -3.6340 36 1 -0.3974 -6.2158 -1.4253 37 1 -0.9724 -8.5636 -1.8843 38 1 1.4649 -8.4934 -5.3874 39 1 4.2286 -4.2630 -7.6683 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365491864.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:39 Heat of formation + Delta-G solvation = -67.352568 kcal Electronic energy + Delta-G solvation = -27716.474351 eV Core-core repulsion = 23347.806591 eV Total energy + Delta-G solvation = -4368.667760 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.111 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.80852 -44.41197 -41.74275 -40.41549 -38.15768 -36.46182 -36.06292 -35.56187 -34.30568 -32.80242 -31.07770 -30.22495 -28.98911 -27.39287 -26.61936 -24.14578 -23.41295 -23.14718 -21.98096 -21.90247 -20.14942 -19.80156 -19.37509 -18.48224 -17.92247 -17.69995 -17.17263 -16.95777 -16.65974 -16.53156 -16.30095 -15.98515 -15.76638 -15.68906 -15.36428 -15.20209 -14.86768 -14.50069 -14.35708 -14.16965 -14.00207 -13.75951 -13.59460 -13.41854 -13.00541 -12.99559 -12.55782 -12.34308 -12.17533 -12.05737 -11.65925 -11.61830 -11.40620 -11.04742 -10.81680 -10.30099 -9.85133 -9.52952 -8.74386 -8.50738 -6.16945 0.19412 0.27561 0.48986 1.37233 1.45489 1.45876 1.50901 1.67117 1.84414 2.03078 2.14830 2.69603 3.06334 3.14045 3.20791 3.24935 3.47621 3.57724 3.80552 3.96938 4.12147 4.18907 4.36336 4.38322 4.60444 4.63310 4.74382 4.79341 4.95340 4.96258 5.02416 5.11275 5.21020 5.24840 5.30686 5.37643 5.38567 5.56237 5.83288 5.93856 6.08480 6.65317 6.84911 6.93955 7.38963 7.63512 8.69329 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010305 B = 0.003190 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.468168 B = 8775.419546 C =11086.176063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.011 3.989 3 N -0.523 5.523 4 C 0.197 3.803 5 O -0.211 6.211 6 C -0.086 4.086 7 C 0.234 3.766 8 N -0.731 5.731 9 C 0.710 3.290 10 O -0.605 6.605 11 N -0.665 5.665 12 C 0.078 3.922 13 C -0.049 4.049 14 C -0.203 4.203 15 C 0.122 3.878 16 F -0.145 7.145 17 C -0.265 4.265 18 C 0.130 3.870 19 O -0.203 6.203 20 C -0.417 4.417 21 H 0.099 0.901 22 C -0.008 4.008 23 N -0.906 5.906 24 Si 1.010 2.990 25 H -0.259 1.259 26 H -0.271 1.271 27 H -0.262 1.262 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.294 0.706 32 H 0.080 0.920 33 H 0.117 0.883 34 H 0.407 0.593 35 H 0.413 0.587 36 H 0.158 0.842 37 H 0.159 0.841 38 H 0.135 0.865 39 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.126 8.312 11.643 14.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.109 4.109 3 N -0.252 5.252 4 C -0.029 4.029 5 O -0.097 6.097 6 C -0.139 4.139 7 C 0.111 3.889 8 N -0.387 5.387 9 C 0.411 3.589 10 O -0.485 6.485 11 N -0.312 5.312 12 C -0.018 4.018 13 C -0.069 4.069 14 C -0.223 4.223 15 C 0.102 3.898 16 F -0.124 7.124 17 C -0.286 4.286 18 C 0.077 3.923 19 O -0.108 6.108 20 C -0.492 4.492 21 H 0.116 0.884 22 C -0.208 4.208 23 N -0.542 5.542 24 Si 0.830 3.170 25 H -0.184 1.184 26 H -0.195 1.195 27 H -0.187 1.187 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.309 0.691 32 H 0.098 0.902 33 H 0.135 0.865 34 H 0.243 0.757 35 H 0.249 0.751 36 H 0.175 0.825 37 H 0.177 0.823 38 H 0.153 0.847 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.250 8.638 12.410 15.706 hybrid contribution 1.062 -0.546 -1.668 2.052 sum -3.188 8.092 10.742 13.821 Atomic orbital electron populations 1.20306 0.84829 1.04439 1.03829 1.22013 0.99165 0.87282 1.02462 1.70462 1.02483 1.32110 1.20163 1.29176 0.98356 0.78930 0.96392 1.84483 1.30075 1.25611 1.69560 1.22945 0.81286 0.97317 1.12302 1.19343 1.02635 0.84516 0.82410 1.45013 1.73008 1.11396 1.09290 1.15802 0.78131 0.82363 0.82631 1.90860 1.58668 1.55398 1.43611 1.42181 1.72557 1.09234 1.07185 1.16896 1.02452 0.85034 0.97371 1.20899 0.93977 0.93720 0.98306 1.20898 1.06756 0.95765 0.98838 1.17472 0.97828 0.78448 0.96066 1.91427 1.91552 1.35014 1.94385 1.20922 1.07529 0.95420 1.04706 1.19184 0.90583 0.90561 0.92005 1.83912 1.55058 1.41419 1.30405 1.21712 1.34593 0.97703 0.95238 0.88354 1.26355 0.95982 0.96658 1.01760 1.70112 1.36257 1.11188 1.36677 0.84759 0.78929 0.77717 0.75617 1.18356 1.19530 1.18670 0.89941 0.89073 0.89971 0.69085 0.90206 0.86505 0.75726 0.75076 0.82497 0.82349 0.84712 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 10.22 71.24 0.73 -0.43 16 2 C 0.01 0.22 7.11 41.26 0.29 0.52 16 3 N -0.52 -10.94 11.29 -304.07 -3.43 -14.38 16 4 C 0.20 3.13 13.23 130.48 1.73 4.86 16 5 O -0.21 -4.35 10.78 -3.74 -0.04 -4.39 16 6 C -0.09 -1.77 6.75 24.79 0.17 -1.60 16 7 C 0.23 4.91 6.01 85.63 0.51 5.42 16 8 N -0.73 -18.16 5.55 -482.29 -2.68 -20.83 16 9 C 0.71 23.05 8.41 179.05 1.51 24.56 16 10 O -0.61 -22.13 13.76 -4.00 -0.05 -22.19 16 11 N -0.66 -23.86 5.20 -316.70 -1.65 -25.50 16 12 C 0.08 3.15 6.33 38.22 0.24 3.40 16 13 C -0.05 -1.73 8.70 22.37 0.19 -1.54 16 14 C -0.20 -6.82 10.02 22.33 0.22 -6.60 16 15 C 0.12 4.62 7.29 22.37 0.16 4.78 16 16 F -0.15 -5.21 17.26 44.97 0.78 -4.43 16 17 C -0.26 -11.49 9.14 22.42 0.20 -11.29 16 18 C 0.13 6.04 6.66 22.68 0.15 6.19 16 19 O -0.20 -10.88 9.32 -22.87 -0.21 -11.09 16 20 C -0.42 -22.48 9.49 67.92 0.64 -21.84 16 21 H 0.10 4.98 5.20 -2.91 -0.02 4.96 16 22 C -0.01 -0.42 5.49 84.83 0.47 0.05 16 23 N -0.91 -50.63 13.67 21.61 0.30 -50.33 16 24 Si 1.01 40.48 29.55 68.60 2.03 42.51 16 25 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 26 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 27 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 28 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 29 H 0.09 1.10 7.17 -2.39 -0.02 1.09 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.29 1.36 8.06 -2.91 -0.02 1.33 16 32 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.12 2.08 7.17 -2.39 -0.02 2.06 16 34 H 0.41 9.32 8.48 -92.71 -0.79 8.53 16 35 H 0.41 14.52 8.59 -92.71 -0.80 13.72 16 36 H 0.16 5.26 6.19 -2.91 -0.02 5.24 16 37 H 0.16 4.24 8.06 -2.91 -0.02 4.22 16 38 H 0.14 5.95 5.64 -2.91 -0.02 5.93 16 39 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -69.69 349.84 1.84 -67.86 By element: Atomic # 1 Polarization: 36.71 SS G_CDS: -0.42 Total: 36.29 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 7.22 Total: 6.49 kcal Atomic # 7 Polarization: -103.59 SS G_CDS: -7.46 Total: -111.05 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -0.31 Total: -37.66 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 0.78 Total: -4.43 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Total: -69.69 1.84 -67.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365491864.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.506 kcal (2) G-P(sol) polarization free energy of solvation -69.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds