Wall clock time and date at job start Tue Mar 31 2020 18:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46849 * 2 1 4 4 N 1.46494 * 109.47356 * 120.00445 * 2 1 3 5 5 C 1.46490 * 120.00177 * 121.88413 * 4 2 1 6 6 C 1.50701 * 109.47471 * 269.99700 * 5 4 2 7 7 H 1.08008 * 119.99434 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00498 * 179.97438 * 6 5 4 9 9 N 1.31509 * 119.99903 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 119.99945 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47162 * 60.00308 * 10 8 6 12 12 H 1.48497 * 109.47182 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47558 * 299.99909 * 10 8 6 14 14 C 1.34774 * 119.99475 * 301.87965 * 4 2 1 15 15 O 1.21608 * 119.99860 * 211.75998 * 14 4 2 16 16 C 1.47504 * 120.00385 * 31.76346 * 14 4 2 17 17 C 1.39563 * 120.47585 * 317.90943 * 16 14 4 18 18 N 1.31553 * 120.68184 * 179.97438 * 17 16 14 19 19 C 1.32736 * 122.06227 * 0.02562 * 18 17 16 20 20 C 1.39932 * 120.73631 * 0.04804 * 19 18 17 21 21 C 1.38617 * 118.95039 * 359.93489 * 20 19 18 22 22 N 1.39373 * 121.71945 * 179.79438 * 20 19 18 23 23 C 1.33408 * 124.36354 * 23.98898 * 22 20 19 24 24 O 1.21298 * 118.57590 * 178.38936 * 23 22 20 25 25 C 1.50164 * 122.84983 * 358.39806 * 23 22 20 26 26 S 1.76400 * 119.55954 * 180.02562 * 19 18 17 27 27 H 1.08997 * 109.46445 * 253.56778 * 1 2 3 28 28 H 1.09005 * 109.47164 * 13.57092 * 1 2 3 29 29 H 1.09002 * 109.47011 * 133.56875 * 1 2 3 30 30 H 1.09004 * 109.46580 * 240.00434 * 2 1 3 31 31 H 1.09002 * 109.47183 * 223.40093 * 3 2 1 32 32 H 1.09005 * 109.47367 * 343.39517 * 3 2 1 33 33 H 1.08995 * 109.46963 * 103.39890 * 3 2 1 34 34 H 1.09006 * 109.47436 * 29.99871 * 5 4 2 35 35 H 1.09002 * 109.47511 * 149.99931 * 5 4 2 36 36 H 0.97003 * 119.99906 * 180.02562 * 9 8 6 37 37 H 1.07997 * 119.65701 * 359.95373 * 17 16 14 38 38 H 1.07999 * 120.73870 * 180.02562 * 21 20 19 39 39 H 0.96995 * 117.81852 * 204.01652 * 22 20 19 40 40 H 1.09006 * 109.45241 * 202.42169 * 25 23 22 41 41 H 1.08999 * 109.43629 * 82.51134 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.8944 -1.8571 1.0620 6 6 2.0574 -3.1082 0.9890 7 1 0.9805 -3.0410 1.0373 8 6 2.6662 -4.3385 0.8597 9 7 3.9774 -4.4203 0.8004 10 14 1.6286 -5.8891 0.7686 11 1 0.7241 -5.8111 -0.4066 12 1 2.5165 -7.0715 0.6315 13 1 0.8203 -6.0174 2.0077 14 6 1.6619 -0.2527 2.4198 15 8 2.4262 -0.3786 3.3572 16 6 0.3444 0.3791 2.6221 17 6 -0.1548 1.2894 1.6894 18 7 -1.3294 1.8549 1.8656 19 6 -2.0864 1.5920 2.9237 20 6 -1.6563 0.6917 3.9049 21 6 -0.4241 0.0746 3.7554 22 7 -2.4325 0.4038 5.0261 23 6 -3.7580 0.5450 5.0807 24 8 -4.3329 0.2347 6.1028 25 6 -4.5691 1.0713 3.9318 26 16 -3.6515 2.3878 3.0934 27 1 -0.3632 -0.2907 0.9857 28 1 -0.3634 0.9990 -0.2411 29 1 -0.3633 -0.7083 -0.7446 30 1 1.8933 -0.5138 -0.8901 31 1 2.8651 1.5363 -0.7061 32 1 1.2326 2.1134 -0.2937 33 1 2.3856 1.7057 0.9997 34 1 3.4877 -1.7634 0.1523 35 1 3.5584 -1.9141 1.9245 36 1 4.4057 -5.2858 0.7090 37 1 0.4294 1.5323 0.8142 38 1 -0.0640 -0.6254 4.4948 39 1 -1.9788 0.0795 5.8196 40 1 -5.5130 1.4683 4.3056 41 1 -4.7690 0.2629 3.2286 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411706630.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:17 Heat of formation + Delta-G solvation = 57.852054 kcal Electronic energy + Delta-G solvation = -27137.295154 eV Core-core repulsion = 23340.269850 eV Total energy + Delta-G solvation = -3797.025304 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.77228 -40.49275 -38.76233 -36.93000 -35.75933 -33.53588 -32.44953 -31.77299 -30.62264 -29.98411 -27.48919 -27.09085 -25.13436 -24.12576 -22.89735 -22.04468 -21.23872 -19.34178 -18.53686 -17.98872 -17.54955 -16.78160 -16.61831 -16.23256 -16.03468 -15.57146 -15.25685 -14.95029 -14.66048 -14.28040 -14.27574 -14.09757 -13.61904 -13.52246 -13.22155 -12.85064 -12.43393 -12.34473 -12.06246 -11.95305 -11.53744 -11.43775 -11.31018 -11.25934 -10.99525 -10.87549 -10.66166 -10.32838 -10.26308 -10.09147 -9.80640 -9.69262 -9.27916 -8.83366 -8.57274 -7.87281 -7.74761 -6.18155 -4.25402 0.23890 0.85512 0.90504 1.61070 2.17975 2.44732 2.88494 3.21525 3.27304 3.28031 3.39869 3.67640 3.71510 4.18007 4.30468 4.40327 4.48336 4.61541 4.71681 4.83374 4.86899 4.96793 5.09389 5.15891 5.30478 5.37481 5.54753 5.65490 5.73302 5.82549 5.95373 6.07373 6.16040 6.18768 6.33222 6.66908 6.91374 7.25748 7.37543 7.39579 7.48127 7.77929 8.06038 8.15559 8.54244 8.81612 9.40952 10.89120 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.013234 B = 0.003844 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.232812 B = 7282.523483 C = 8328.468753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.132 3.868 3 C -0.187 4.187 4 N -0.602 5.602 5 C 0.248 3.752 6 C -0.539 4.539 7 H 0.058 0.942 8 C 0.065 3.935 9 N -0.890 5.890 10 Si 0.897 3.103 11 H -0.276 1.276 12 H -0.285 1.285 13 H -0.277 1.277 14 C 0.573 3.427 15 O -0.521 6.521 16 C -0.156 4.156 17 C 0.121 3.879 18 N -0.457 5.457 19 C 0.087 3.913 20 C 0.088 3.912 21 C -0.042 4.042 22 N -0.648 5.648 23 C 0.526 3.474 24 O -0.517 6.517 25 C -0.146 4.146 26 S -0.016 6.016 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.036 0.964 35 H 0.047 0.953 36 H 0.266 0.734 37 H 0.217 0.783 38 H 0.153 0.847 39 H 0.418 0.582 40 H 0.153 0.847 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.549 13.443 0.041 18.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.027 3.973 3 C -0.244 4.244 4 N -0.334 5.334 5 C 0.130 3.870 6 C -0.577 4.577 7 H 0.076 0.924 8 C -0.138 4.138 9 N -0.528 5.528 10 Si 0.724 3.276 11 H -0.201 1.201 12 H -0.210 1.210 13 H -0.202 1.202 14 C 0.359 3.641 15 O -0.397 6.397 16 C -0.164 4.164 17 C -0.041 4.041 18 N -0.168 5.168 19 C -0.162 4.162 20 C -0.016 4.016 21 C -0.071 4.071 22 N -0.293 5.293 23 C 0.312 3.688 24 O -0.393 6.393 25 C -0.297 4.297 26 S 0.222 5.778 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.123 0.877 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.232 0.768 38 H 0.171 0.829 39 H 0.256 0.744 40 H 0.171 0.829 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.248 14.844 -0.006 19.896 hybrid contribution 0.396 -3.151 1.084 3.356 sum -12.852 11.693 1.078 17.408 Atomic orbital electron populations 1.23748 0.96378 1.02466 1.03646 1.21108 0.93211 0.92555 0.90416 1.22773 1.02114 0.95934 1.03606 1.48061 1.50798 1.31620 1.02947 1.19401 0.88990 0.79809 0.98798 1.21441 0.93441 0.91091 1.51761 0.92414 1.24920 0.94976 0.99027 0.94862 1.69915 1.08241 1.25479 1.49161 0.86579 0.80061 0.82258 0.78667 1.20135 1.21022 1.20242 1.17618 0.84728 0.77892 0.83852 1.90761 1.51779 1.54732 1.42453 1.21371 0.98115 1.00899 0.96021 1.25073 0.92231 0.89471 0.97298 1.67901 1.05878 1.24641 1.18394 1.22866 1.00688 0.98506 0.94113 1.18188 0.93660 0.99864 0.89901 1.21300 0.91583 0.97232 0.97007 1.43024 1.06743 1.64721 1.14833 1.19874 0.81805 0.77502 0.89665 1.90837 1.68576 1.48680 1.31158 1.23819 1.02972 1.03389 0.99542 1.85968 1.01777 1.18056 1.71950 0.89853 0.90141 0.91443 0.87720 0.90710 0.90783 0.91518 0.94559 0.93509 0.92445 0.76824 0.82903 0.74360 0.82884 0.85371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.68 7.73 37.16 0.29 -2.40 16 2 C 0.13 1.92 3.27 -67.93 -0.22 1.69 16 3 C -0.19 -2.11 8.35 37.16 0.31 -1.80 16 4 N -0.60 -11.61 2.38 -168.70 -0.40 -12.01 16 5 C 0.25 5.99 5.32 -5.20 -0.03 5.97 16 6 C -0.54 -14.11 9.39 -34.44 -0.32 -14.44 16 7 H 0.06 1.50 7.81 -52.48 -0.41 1.09 16 8 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -25.08 13.29 55.43 0.74 -24.34 16 10 Si 0.90 20.73 29.54 -169.99 -5.02 15.70 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 C 0.57 11.11 5.89 -12.48 -0.07 11.04 16 15 O -0.52 -11.92 16.78 5.27 0.09 -11.83 16 16 C -0.16 -2.43 4.26 -104.86 -0.45 -2.88 16 17 C 0.12 1.62 5.86 -17.18 -0.10 1.52 16 18 N -0.46 -6.05 10.27 -15.99 -0.16 -6.21 16 19 C 0.09 1.10 6.88 -16.53 -0.11 0.99 16 20 C 0.09 1.10 6.50 -83.66 -0.54 0.56 16 21 C -0.04 -0.60 9.60 -38.68 -0.37 -0.97 16 22 N -0.65 -7.19 5.14 -10.27 -0.05 -7.24 16 23 C 0.53 5.92 7.59 -11.85 -0.09 5.83 16 24 O -0.52 -7.24 17.80 5.54 0.10 -7.14 16 25 C -0.15 -1.24 6.46 35.75 0.23 -1.00 16 26 S -0.02 -0.16 22.56 -107.50 -2.43 -2.59 16 27 H 0.08 1.25 3.98 -61.87 -0.25 1.01 16 28 H 0.08 0.86 5.39 -51.93 -0.28 0.58 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.10 1.53 7.81 -51.93 -0.41 1.13 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.64 6.20 -51.93 -0.32 0.32 16 33 H 0.07 0.85 6.82 -51.93 -0.35 0.49 16 34 H 0.04 0.89 7.94 -51.93 -0.41 0.47 16 35 H 0.05 1.28 7.35 -51.93 -0.38 0.90 16 36 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.22 2.54 1.05 -53.97 -0.06 2.48 16 38 H 0.15 2.08 8.06 -52.49 -0.42 1.66 16 39 H 0.42 4.10 8.66 -40.82 -0.35 3.74 16 40 H 0.15 0.97 8.13 -51.91 -0.42 0.55 16 41 H 0.13 0.92 8.14 -51.92 -0.42 0.50 16 LS Contribution 343.57 15.07 5.18 5.18 Total: -1.00 -32.16 343.57 -8.01 -40.18 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -4.47 Total: 4.53 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -1.58 Total: 5.78 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: 0.12 Total: -49.80 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: 0.19 Total: -18.98 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -2.43 Total: -2.59 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.16 -8.01 -40.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411706630.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.029 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds