Wall clock time and date at job start Tue Mar 31 2020 18:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46849 * 2 1 4 4 N 1.46494 * 109.47356 * 120.00445 * 2 1 3 5 5 C 1.46490 * 120.00177 * 121.88413 * 4 2 1 6 6 C 1.50701 * 109.47471 * 269.99700 * 5 4 2 7 7 H 1.08008 * 119.99434 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00498 * 179.97438 * 6 5 4 9 9 N 1.31509 * 119.99903 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 119.99945 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47162 * 60.00308 * 10 8 6 12 12 H 1.48497 * 109.47182 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47558 * 299.99909 * 10 8 6 14 14 C 1.34774 * 119.99475 * 301.87965 * 4 2 1 15 15 O 1.21608 * 119.99860 * 211.75998 * 14 4 2 16 16 C 1.47504 * 120.00385 * 31.76346 * 14 4 2 17 17 C 1.39563 * 120.47585 * 317.90943 * 16 14 4 18 18 N 1.31553 * 120.68184 * 179.97438 * 17 16 14 19 19 C 1.32736 * 122.06227 * 0.02562 * 18 17 16 20 20 C 1.39932 * 120.73631 * 0.04804 * 19 18 17 21 21 C 1.38617 * 118.95039 * 359.93489 * 20 19 18 22 22 N 1.39373 * 121.71945 * 179.79438 * 20 19 18 23 23 C 1.33408 * 124.36354 * 23.98898 * 22 20 19 24 24 O 1.21298 * 118.57590 * 178.38936 * 23 22 20 25 25 C 1.50164 * 122.84983 * 358.39806 * 23 22 20 26 26 S 1.76400 * 119.55954 * 180.02562 * 19 18 17 27 27 H 1.08997 * 109.46445 * 253.56778 * 1 2 3 28 28 H 1.09005 * 109.47164 * 13.57092 * 1 2 3 29 29 H 1.09002 * 109.47011 * 133.56875 * 1 2 3 30 30 H 1.09004 * 109.46580 * 240.00434 * 2 1 3 31 31 H 1.09002 * 109.47183 * 223.40093 * 3 2 1 32 32 H 1.09005 * 109.47367 * 343.39517 * 3 2 1 33 33 H 1.08995 * 109.46963 * 103.39890 * 3 2 1 34 34 H 1.09006 * 109.47436 * 29.99871 * 5 4 2 35 35 H 1.09002 * 109.47511 * 149.99931 * 5 4 2 36 36 H 0.97003 * 119.99906 * 180.02562 * 9 8 6 37 37 H 1.07997 * 119.65701 * 359.95373 * 17 16 14 38 38 H 1.07999 * 120.73870 * 180.02562 * 21 20 19 39 39 H 0.96995 * 117.81852 * 204.01652 * 22 20 19 40 40 H 1.09006 * 109.45241 * 202.42169 * 25 23 22 41 41 H 1.08999 * 109.43629 * 82.51134 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.8944 -1.8571 1.0620 6 6 2.0574 -3.1082 0.9890 7 1 0.9805 -3.0410 1.0373 8 6 2.6662 -4.3385 0.8597 9 7 3.9774 -4.4203 0.8004 10 14 1.6286 -5.8891 0.7686 11 1 0.7241 -5.8111 -0.4066 12 1 2.5165 -7.0715 0.6315 13 1 0.8203 -6.0174 2.0077 14 6 1.6619 -0.2527 2.4198 15 8 2.4262 -0.3786 3.3572 16 6 0.3444 0.3791 2.6221 17 6 -0.1548 1.2894 1.6894 18 7 -1.3294 1.8549 1.8656 19 6 -2.0864 1.5920 2.9237 20 6 -1.6563 0.6917 3.9049 21 6 -0.4241 0.0746 3.7554 22 7 -2.4325 0.4038 5.0261 23 6 -3.7580 0.5450 5.0807 24 8 -4.3329 0.2347 6.1028 25 6 -4.5691 1.0713 3.9318 26 16 -3.6515 2.3878 3.0934 27 1 -0.3632 -0.2907 0.9857 28 1 -0.3634 0.9990 -0.2411 29 1 -0.3633 -0.7083 -0.7446 30 1 1.8933 -0.5138 -0.8901 31 1 2.8651 1.5363 -0.7061 32 1 1.2326 2.1134 -0.2937 33 1 2.3856 1.7057 0.9997 34 1 3.4877 -1.7634 0.1523 35 1 3.5584 -1.9141 1.9245 36 1 4.4057 -5.2858 0.7090 37 1 0.4294 1.5323 0.8142 38 1 -0.0640 -0.6254 4.4948 39 1 -1.9788 0.0795 5.8196 40 1 -5.5130 1.4683 4.3056 41 1 -4.7690 0.2629 3.2286 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411706630.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:17 Heat of formation + Delta-G solvation = 35.239918 kcal Electronic energy + Delta-G solvation = -27138.275690 eV Core-core repulsion = 23340.269850 eV Total energy + Delta-G solvation = -3798.005840 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.90960 -41.51700 -40.03464 -38.25228 -36.88370 -35.33911 -33.67925 -33.32192 -31.43919 -31.00467 -29.29329 -28.11782 -26.48803 -25.19282 -24.57223 -23.32089 -22.27292 -20.52187 -19.50952 -19.00536 -18.67479 -18.63534 -17.80771 -17.50951 -17.20001 -16.74645 -16.56556 -16.29864 -15.96108 -15.77796 -15.34819 -15.10690 -14.85869 -14.47537 -14.30507 -14.11752 -13.86891 -13.66859 -13.47507 -13.22559 -13.07184 -12.79077 -12.59021 -12.42784 -12.36235 -12.24544 -12.10480 -11.83298 -11.72240 -11.38188 -11.26459 -10.86471 -10.65413 -10.58780 -9.77004 -9.45061 -8.69728 -8.23633 -6.39680 -0.81209 -0.19179 0.01164 0.72768 1.29082 1.36490 1.38558 1.41603 1.47732 1.64072 2.08979 2.37001 2.42883 2.85133 3.05788 3.12082 3.33862 3.53514 3.56947 3.79973 3.85251 3.89962 4.03725 4.17485 4.24717 4.32535 4.53054 4.61417 4.71150 4.81118 4.91416 5.00406 5.04201 5.13973 5.20368 5.23576 5.34136 5.55862 5.75742 5.84080 6.02852 6.36423 6.54225 6.60297 6.69844 7.05277 7.32674 8.82506 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.013234 B = 0.003844 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.232812 B = 7282.523483 C = 8328.468753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.122 3.878 3 C -0.182 4.182 4 N -0.606 5.606 5 C 0.264 3.736 6 C -0.547 4.547 7 H 0.058 0.942 8 C 0.014 3.986 9 N -0.925 5.925 10 Si 0.962 3.038 11 H -0.261 1.261 12 H -0.281 1.281 13 H -0.277 1.277 14 C 0.571 3.429 15 O -0.572 6.572 16 C -0.177 4.177 17 C 0.136 3.864 18 N -0.457 5.457 19 C 0.084 3.916 20 C 0.092 3.908 21 C -0.046 4.046 22 N -0.646 5.646 23 C 0.526 3.474 24 O -0.546 6.546 25 C -0.142 4.142 26 S 0.011 5.989 27 H 0.067 0.933 28 H 0.112 0.888 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.050 0.950 34 H 0.028 0.972 35 H 0.002 0.998 36 H 0.268 0.732 37 H 0.231 0.769 38 H 0.148 0.852 39 H 0.421 0.579 40 H 0.180 0.820 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.721 14.645 -1.204 21.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.019 3.981 3 C -0.239 4.239 4 N -0.338 5.338 5 C 0.143 3.857 6 C -0.585 4.585 7 H 0.076 0.924 8 C -0.186 4.186 9 N -0.564 5.564 10 Si 0.787 3.213 11 H -0.186 1.186 12 H -0.206 1.206 13 H -0.203 1.203 14 C 0.360 3.640 15 O -0.452 6.452 16 C -0.185 4.185 17 C -0.026 4.026 18 N -0.169 5.169 19 C -0.165 4.165 20 C -0.013 4.013 21 C -0.075 4.075 22 N -0.291 5.291 23 C 0.313 3.687 24 O -0.424 6.424 25 C -0.293 4.293 26 S 0.250 5.750 27 H 0.085 0.915 28 H 0.130 0.870 29 H 0.088 0.912 30 H 0.119 0.881 31 H 0.106 0.894 32 H 0.129 0.871 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.020 0.980 36 H 0.077 0.923 37 H 0.246 0.754 38 H 0.166 0.834 39 H 0.260 0.740 40 H 0.198 0.802 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -16.450 16.084 -1.291 23.042 hybrid contribution 1.327 -3.453 1.517 3.999 sum -15.122 12.631 0.226 19.705 Atomic orbital electron populations 1.23689 0.94794 1.04363 1.02785 1.21452 0.94549 0.93924 0.88146 1.22736 1.03855 0.94087 1.03225 1.48002 1.50303 1.30634 1.04833 1.18865 0.89008 0.81599 0.96231 1.21708 0.93547 0.92019 1.51259 0.92393 1.25775 0.96056 1.02274 0.94458 1.70038 1.09901 1.26282 1.50168 0.85551 0.78553 0.78311 0.78929 1.18588 1.20611 1.20264 1.18151 0.85681 0.77176 0.83008 1.90719 1.53485 1.57146 1.43832 1.20979 0.96630 1.02907 0.98000 1.25196 0.92293 0.88249 0.96814 1.68046 1.05632 1.24592 1.18603 1.23407 1.01842 0.97753 0.93482 1.18031 0.93075 0.99792 0.90357 1.21318 0.92325 0.97320 0.96539 1.43054 1.06986 1.64448 1.14580 1.20366 0.81564 0.76755 0.90029 1.90834 1.68918 1.50098 1.32525 1.23995 1.03031 1.03626 0.98631 1.85977 0.99732 1.18006 1.71273 0.91496 0.87000 0.91191 0.88089 0.89413 0.87078 0.93048 0.95400 0.97997 0.92337 0.75442 0.83414 0.73982 0.80211 0.83323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.82 7.73 71.98 0.56 -4.26 16 2 C 0.12 3.47 3.27 45.00 0.15 3.62 16 3 C -0.18 -3.79 8.35 71.98 0.60 -3.19 16 4 N -0.61 -24.20 2.38 -805.91 -1.92 -26.12 16 5 C 0.26 13.41 5.32 85.64 0.46 13.86 16 6 C -0.55 -29.44 9.39 25.60 0.24 -29.20 16 7 H 0.06 3.05 7.81 -2.91 -0.02 3.03 16 8 C 0.01 0.78 5.46 84.66 0.46 1.24 16 9 N -0.92 -53.62 13.29 21.45 0.28 -53.34 16 10 Si 0.96 42.70 29.54 68.60 2.03 44.72 16 11 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 12 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 13 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 14 C 0.57 23.12 5.89 86.69 0.51 23.64 16 15 O -0.57 -27.98 16.78 -4.06 -0.07 -28.05 16 16 C -0.18 -5.54 4.26 -20.02 -0.09 -5.62 16 17 C 0.14 3.39 5.86 85.05 0.50 3.89 16 18 N -0.46 -10.83 10.27 -204.51 -2.10 -12.93 16 19 C 0.08 1.92 6.88 84.97 0.58 2.50 16 20 C 0.09 2.18 6.50 38.44 0.25 2.43 16 21 C -0.05 -1.30 9.60 22.86 0.22 -1.08 16 22 N -0.65 -13.45 5.14 -305.56 -1.57 -15.02 16 23 C 0.53 10.68 7.59 87.70 0.67 11.34 16 24 O -0.55 -14.39 17.80 -3.09 -0.05 -14.45 16 25 C -0.14 -1.89 6.46 71.07 0.46 -1.43 16 26 S 0.01 0.18 22.56 -56.49 -1.27 -1.09 16 27 H 0.07 1.92 3.98 -11.73 -0.05 1.88 16 28 H 0.11 1.99 5.39 -2.38 -0.01 1.97 16 29 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 30 H 0.10 2.92 7.81 -2.38 -0.02 2.90 16 31 H 0.09 1.62 8.14 -2.39 -0.02 1.61 16 32 H 0.11 1.50 6.20 -2.38 -0.01 1.48 16 33 H 0.05 1.27 6.82 -2.39 -0.02 1.25 16 34 H 0.03 1.44 7.94 -2.38 -0.02 1.42 16 35 H 0.00 0.11 7.35 -2.39 -0.02 0.09 16 36 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 37 H 0.23 4.84 1.05 -4.30 0.00 4.84 16 38 H 0.15 4.23 8.06 -2.91 -0.02 4.21 16 39 H 0.42 8.05 8.66 -92.71 -0.80 7.24 16 40 H 0.18 1.50 8.13 -2.39 -0.02 1.48 16 41 H 0.15 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -72.54 343.57 1.17 -71.38 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.27 Total: 17.16 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: 5.57 Total: 17.73 kcal Atomic # 7 Polarization: -102.10 SS G_CDS: -5.30 Total: -107.40 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -0.12 Total: -42.50 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 16 Polarization: 0.18 SS G_CDS: -1.27 Total: -1.09 kcal Total: -72.54 1.17 -71.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411706630.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.616 kcal (2) G-P(sol) polarization free energy of solvation -72.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds