Wall clock time and date at job start Tue Mar 31 2020 18:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81001 * 1 3 3 C 1.76198 * 99.99735 * 2 1 4 4 N 1.32518 * 119.62694 * 0.24848 * 3 2 1 5 5 C 1.32104 * 121.86676 * 180.31293 * 4 3 2 6 6 O 1.35310 * 119.57641 * 179.71227 * 5 4 3 7 7 C 1.40657 * 120.85617 * 359.43273 * 5 4 3 8 8 C 1.47264 * 120.42652 * 180.25414 * 7 5 4 9 9 O 1.21621 * 119.99721 * 54.38140 * 8 7 5 10 10 N 1.34774 * 120.00049 * 234.38408 * 8 7 5 11 11 C 1.46497 * 120.00036 * 185.62727 * 10 8 7 12 12 C 1.50707 * 109.46767 * 90.00134 * 11 10 8 13 13 H 1.07998 * 119.99913 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99534 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00415 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99589 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.46996 * 90.00425 * 16 14 12 18 18 H 1.48501 * 109.47134 * 210.00010 * 16 14 12 19 19 H 1.48496 * 109.47502 * 330.00170 * 16 14 12 20 20 C 1.46507 * 119.99874 * 5.63058 * 10 8 7 21 21 C 1.53004 * 109.47093 * 124.92568 * 20 10 8 22 22 C 1.53000 * 109.46986 * 244.92053 * 20 10 8 23 23 C 1.39790 * 119.15079 * 0.27679 * 7 5 4 24 24 C 1.39570 * 118.30472 * 0.02562 * 23 7 5 25 25 C 1.43204 * 120.46646 * 180.02562 * 24 23 7 26 26 N 3.64668 * 171.15113 * 0.17410 * 2 1 3 27 27 H 1.08999 * 109.46989 * 300.00210 * 1 2 3 28 28 H 1.09002 * 109.46973 * 60.00123 * 1 2 3 29 29 H 1.08997 * 109.47476 * 179.97438 * 1 2 3 30 30 H 0.96697 * 113.99813 * 269.73211 * 6 5 4 31 31 H 1.09004 * 109.47339 * 209.99887 * 11 10 8 32 32 H 1.08995 * 109.47618 * 330.00467 * 11 10 8 33 33 H 0.97000 * 119.99640 * 180.02562 * 15 14 12 34 34 H 1.08994 * 109.47408 * 4.92470 * 20 10 8 35 35 H 1.09003 * 109.47245 * 59.99810 * 21 20 10 36 36 H 1.08993 * 109.46976 * 180.02562 * 21 20 10 37 37 H 1.09008 * 109.46969 * 299.99942 * 21 20 10 38 38 H 1.09005 * 109.46837 * 60.00371 * 22 20 10 39 39 H 1.08993 * 109.46902 * 179.97438 * 22 20 10 40 40 H 1.09003 * 109.47393 * 300.00216 * 22 20 10 41 41 H 1.08002 * 120.85087 * 180.02562 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 7 1.0952 2.5804 0.0050 5 6 1.2735 3.8893 -0.0009 6 8 0.1976 4.7099 -0.0013 7 6 2.5673 4.4412 -0.0009 8 6 2.7551 5.9018 -0.0019 9 8 2.2239 6.5837 0.8537 10 7 3.5154 6.4828 -0.9509 11 6 3.8036 7.9175 -0.8818 12 6 5.0672 8.1385 -0.0908 13 1 5.6022 7.2946 0.3191 14 6 5.5407 9.4180 0.1087 15 7 4.8894 10.4455 -0.3909 16 14 7.1073 9.6918 1.0886 17 1 8.2750 9.6695 0.1715 18 1 7.0399 11.0085 1.7720 19 1 7.2524 8.6154 2.1012 20 6 4.0537 5.6796 -2.0516 21 6 3.6344 6.2981 -3.3868 22 6 5.5808 5.6488 -1.9611 23 6 3.6726 3.5854 -0.0004 24 6 3.4436 2.2086 -0.0005 25 6 4.5420 1.2898 0.0005 26 7 5.4133 0.5610 0.0017 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.1151 4.9480 -0.8848 31 1 3.9326 8.3112 -1.8901 32 1 2.9753 8.4315 -0.3943 33 1 5.2228 11.3456 -0.2508 34 1 3.6651 4.6636 -1.9839 35 1 4.0231 7.3142 -3.4545 36 1 4.0345 5.7003 -4.2056 37 1 2.5465 6.3201 -3.4513 38 1 5.8795 5.2082 -1.0099 39 1 5.9812 5.0509 -2.7797 40 1 5.9694 6.6649 -2.0288 41 1 4.6781 3.9795 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411708381.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:20 Heat of formation + Delta-G solvation = -2.645414 kcal Electronic energy + Delta-G solvation = -26865.577679 eV Core-core repulsion = 23065.929007 eV Total energy + Delta-G solvation = -3799.648671 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.08613 -38.92868 -37.75309 -36.47944 -36.06048 -33.39882 -32.75848 -31.25365 -30.90824 -29.28532 -27.55113 -26.91839 -25.18805 -24.36190 -23.02247 -21.65464 -19.94216 -19.48418 -18.15743 -17.94921 -17.14621 -16.47586 -16.36080 -15.92429 -15.22358 -14.80114 -14.45613 -14.32050 -14.25944 -13.98343 -13.80156 -13.59813 -13.48060 -13.22891 -12.98764 -12.93499 -12.68525 -12.51541 -12.27803 -12.06097 -11.88028 -11.65133 -11.39588 -11.10382 -11.07034 -10.98039 -10.76658 -10.52346 -10.22987 -10.17417 -10.07830 -9.75751 -9.64086 -9.14566 -8.48374 -8.02772 -7.80450 -6.10558 -4.14689 0.02573 0.54766 0.96526 1.68318 2.40456 2.43868 3.12476 3.19568 3.26147 3.34186 3.37176 3.38181 3.64585 3.72411 4.26942 4.38737 4.49443 4.68235 4.82693 4.89726 4.92875 5.10071 5.24066 5.31781 5.40123 5.45192 5.50403 5.52288 5.75378 5.90676 6.02660 6.13530 6.22103 6.46637 6.81595 6.94508 7.05791 7.21042 7.32535 7.35860 7.42390 7.85310 8.15306 8.22625 8.75329 8.92270 9.50000 10.97480 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.015790 B = 0.003593 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.797774 B = 7791.359514 C = 8401.396576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.045 6.045 3 C 0.191 3.809 4 N -0.507 5.507 5 C 0.399 3.601 6 O -0.458 6.458 7 C -0.184 4.184 8 C 0.554 3.446 9 O -0.512 6.512 10 N -0.582 5.582 11 C 0.245 3.755 12 C -0.525 4.525 13 H 0.059 0.941 14 C 0.063 3.937 15 N -0.893 5.893 16 Si 0.894 3.106 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.128 3.872 21 C -0.160 4.160 22 C -0.163 4.163 23 C 0.031 3.969 24 C -0.080 4.080 25 C 0.259 3.741 26 N -0.393 5.393 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.408 0.592 31 H 0.039 0.961 32 H 0.046 0.954 33 H 0.264 0.736 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.086 0.914 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.785 -17.812 -5.898 20.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.197 5.803 3 C -0.062 4.062 4 N -0.230 5.230 5 C 0.216 3.784 6 O -0.266 6.266 7 C -0.194 4.194 8 C 0.338 3.662 9 O -0.388 6.388 10 N -0.314 5.314 11 C 0.126 3.874 12 C -0.564 4.564 13 H 0.077 0.923 14 C -0.139 4.139 15 N -0.531 5.531 16 Si 0.722 3.278 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.199 1.199 20 C 0.024 3.976 21 C -0.218 4.218 22 C -0.220 4.220 23 C 0.002 3.998 24 C -0.093 4.093 25 C -0.058 4.058 26 N -0.068 5.068 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.122 0.878 30 H 0.268 0.732 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.105 0.895 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -6.887 -19.690 -4.861 21.419 hybrid contribution 0.428 2.013 0.116 2.061 sum -6.460 -17.677 -4.745 19.409 Atomic orbital electron populations 1.23537 0.93107 1.06399 1.07626 1.86090 1.08749 0.95933 1.89575 1.23054 0.89110 0.98994 0.95001 1.67559 1.32841 1.03685 1.18922 1.19156 0.85405 0.85294 0.88563 1.84752 1.44937 1.63107 1.33765 1.21275 0.93116 0.97219 1.07782 1.17516 0.80601 0.85016 0.83110 1.90843 1.47796 1.63206 1.36912 1.48331 1.48063 1.12058 1.22977 1.19356 0.97161 0.72896 0.97943 1.21411 1.08486 0.92503 1.34008 0.92278 1.24906 0.97416 0.95883 0.95731 1.69920 1.39236 0.98770 1.45203 0.86553 0.83196 0.77760 0.80277 1.20651 1.21111 1.19885 1.21108 0.94960 0.94137 0.87421 1.22131 1.01168 1.02715 0.95808 1.22243 0.94685 1.04499 1.00615 1.21839 1.00323 0.89691 0.87904 1.16248 0.88234 0.91089 1.13743 1.24956 0.93004 0.93507 0.94293 1.81241 1.09137 1.08253 1.08209 0.88693 0.88789 0.87777 0.73180 0.94288 0.93619 0.92678 0.91107 0.90810 0.92112 0.92866 0.93002 0.92857 0.89482 0.82058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.64 101.05 0.97 0.04 16 2 S -0.04 -0.42 21.68 -107.50 -2.33 -2.75 16 3 C 0.19 2.19 7.02 -16.23 -0.11 2.07 16 4 N -0.51 -6.11 9.11 -11.35 -0.10 -6.22 16 5 C 0.40 5.36 7.75 -16.52 -0.13 5.24 16 6 O -0.46 -5.95 12.74 -20.91 -0.27 -6.22 16 7 C -0.18 -2.72 4.59 -104.74 -0.48 -3.20 16 8 C 0.55 10.61 6.79 -12.59 -0.09 10.52 16 9 O -0.51 -12.22 16.32 1.97 0.03 -12.19 16 10 N -0.58 -10.96 2.39 -168.79 -0.40 -11.36 16 11 C 0.24 5.80 4.77 -5.19 -0.02 5.78 16 12 C -0.53 -13.66 7.85 -34.44 -0.27 -13.93 16 13 H 0.06 1.52 7.59 -52.49 -0.40 1.13 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -25.21 13.29 55.43 0.74 -24.48 16 16 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 C 0.13 1.86 2.54 -67.92 -0.17 1.68 16 21 C -0.16 -2.09 9.07 37.16 0.34 -1.76 16 22 C -0.16 -2.37 8.47 37.16 0.31 -2.06 16 23 C 0.03 0.40 7.57 -38.51 -0.29 0.11 16 24 C -0.08 -0.95 5.77 -106.44 -0.61 -1.57 16 25 C 0.26 3.24 14.28 -22.47 -0.32 2.91 16 26 N -0.39 -5.48 18.54 41.83 0.78 -4.71 16 27 H 0.09 0.71 8.12 -51.92 -0.42 0.29 16 28 H 0.09 0.63 8.12 -51.92 -0.42 0.21 16 29 H 0.10 0.48 8.14 -51.92 -0.42 0.06 16 30 H 0.41 3.19 9.06 45.56 0.41 3.60 16 31 H 0.04 0.93 6.18 -51.93 -0.32 0.61 16 32 H 0.05 1.25 7.35 -51.93 -0.38 0.87 16 33 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.07 0.87 5.20 -51.93 -0.27 0.60 16 35 H 0.07 1.12 6.52 -51.93 -0.34 0.78 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 38 H 0.05 0.76 6.72 -51.93 -0.35 0.41 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.09 1.53 6.92 -51.93 -0.36 1.17 16 41 H 0.16 1.99 6.27 -52.49 -0.33 1.66 16 LS Contribution 365.40 15.07 5.51 5.51 Total: -1.00 -32.54 365.40 -6.05 -38.59 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -4.00 Total: 0.40 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -0.97 Total: 7.45 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: 1.01 Total: -46.76 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.23 Total: -18.41 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -0.42 SS G_CDS: -2.33 Total: -2.75 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.54 -6.05 -38.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411708381.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.947 kcal (2) G-P(sol) polarization free energy of solvation -32.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds