Wall clock time and date at job start Tue Mar 31 2020 18:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81001 * 1 3 3 C 1.76198 * 99.99735 * 2 1 4 4 N 1.32518 * 119.62694 * 0.24848 * 3 2 1 5 5 C 1.32104 * 121.86676 * 180.31293 * 4 3 2 6 6 O 1.35310 * 119.57641 * 179.71227 * 5 4 3 7 7 C 1.40657 * 120.85617 * 359.43273 * 5 4 3 8 8 C 1.47264 * 120.42652 * 180.25414 * 7 5 4 9 9 O 1.21621 * 119.99721 * 54.38140 * 8 7 5 10 10 N 1.34774 * 120.00049 * 234.38408 * 8 7 5 11 11 C 1.46497 * 120.00036 * 185.62727 * 10 8 7 12 12 C 1.50707 * 109.46767 * 90.00134 * 11 10 8 13 13 H 1.07998 * 119.99913 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99534 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00415 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99589 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.46996 * 90.00425 * 16 14 12 18 18 H 1.48501 * 109.47134 * 210.00010 * 16 14 12 19 19 H 1.48496 * 109.47502 * 330.00170 * 16 14 12 20 20 C 1.46507 * 119.99874 * 5.63058 * 10 8 7 21 21 C 1.53004 * 109.47093 * 124.92568 * 20 10 8 22 22 C 1.53000 * 109.46986 * 244.92053 * 20 10 8 23 23 C 1.39790 * 119.15079 * 0.27679 * 7 5 4 24 24 C 1.39570 * 118.30472 * 0.02562 * 23 7 5 25 25 C 1.43204 * 120.46646 * 180.02562 * 24 23 7 26 26 N 3.64668 * 171.15113 * 0.17410 * 2 1 3 27 27 H 1.08999 * 109.46989 * 300.00210 * 1 2 3 28 28 H 1.09002 * 109.46973 * 60.00123 * 1 2 3 29 29 H 1.08997 * 109.47476 * 179.97438 * 1 2 3 30 30 H 0.96697 * 113.99813 * 269.73211 * 6 5 4 31 31 H 1.09004 * 109.47339 * 209.99887 * 11 10 8 32 32 H 1.08995 * 109.47618 * 330.00467 * 11 10 8 33 33 H 0.97000 * 119.99640 * 180.02562 * 15 14 12 34 34 H 1.08994 * 109.47408 * 4.92470 * 20 10 8 35 35 H 1.09003 * 109.47245 * 59.99810 * 21 20 10 36 36 H 1.08993 * 109.46976 * 180.02562 * 21 20 10 37 37 H 1.09008 * 109.46969 * 299.99942 * 21 20 10 38 38 H 1.09005 * 109.46837 * 60.00371 * 22 20 10 39 39 H 1.08993 * 109.46902 * 179.97438 * 22 20 10 40 40 H 1.09003 * 109.47393 * 300.00216 * 22 20 10 41 41 H 1.08002 * 120.85087 * 180.02562 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 7 1.0952 2.5804 0.0050 5 6 1.2735 3.8893 -0.0009 6 8 0.1976 4.7099 -0.0013 7 6 2.5673 4.4412 -0.0009 8 6 2.7551 5.9018 -0.0019 9 8 2.2239 6.5837 0.8537 10 7 3.5154 6.4828 -0.9509 11 6 3.8036 7.9175 -0.8818 12 6 5.0672 8.1385 -0.0908 13 1 5.6022 7.2946 0.3191 14 6 5.5407 9.4180 0.1087 15 7 4.8894 10.4455 -0.3909 16 14 7.1073 9.6918 1.0886 17 1 8.2750 9.6695 0.1715 18 1 7.0399 11.0085 1.7720 19 1 7.2524 8.6154 2.1012 20 6 4.0537 5.6796 -2.0516 21 6 3.6344 6.2981 -3.3868 22 6 5.5808 5.6488 -1.9611 23 6 3.6726 3.5854 -0.0004 24 6 3.4436 2.2086 -0.0005 25 6 4.5420 1.2898 0.0005 26 7 5.4133 0.5610 0.0017 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.1151 4.9480 -0.8848 31 1 3.9326 8.3112 -1.8901 32 1 2.9753 8.4315 -0.3943 33 1 5.2228 11.3456 -0.2508 34 1 3.6651 4.6636 -1.9839 35 1 4.0231 7.3142 -3.4545 36 1 4.0345 5.7003 -4.2056 37 1 2.5465 6.3201 -3.4513 38 1 5.8795 5.2082 -1.0099 39 1 5.9812 5.0509 -2.7797 40 1 5.9694 6.6649 -2.0288 41 1 4.6781 3.9795 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411708381.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:20 Heat of formation + Delta-G solvation = -26.098354 kcal Electronic energy + Delta-G solvation = -26866.594674 eV Core-core repulsion = 23065.929007 eV Total energy + Delta-G solvation = -3800.665667 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.19600 -40.33154 -38.77193 -37.58865 -37.44757 -35.02135 -34.17584 -32.49932 -32.23323 -29.89100 -29.30743 -28.05382 -26.43088 -25.37898 -24.76854 -22.95567 -21.18607 -20.45714 -19.41613 -18.94301 -18.57496 -18.26166 -17.54293 -17.13221 -16.63779 -16.14831 -15.73360 -15.57147 -15.28996 -15.04587 -14.95784 -14.64825 -14.50538 -14.32107 -14.24377 -13.94361 -13.93570 -13.69126 -13.36647 -13.33589 -13.23750 -13.04044 -12.85990 -12.76350 -12.50148 -12.22016 -12.12946 -11.82521 -11.82244 -11.54963 -11.39744 -11.15509 -10.74125 -10.57189 -10.56450 -9.47567 -8.83671 -8.16961 -6.27906 -0.97166 -0.47809 0.12476 1.00384 1.35521 1.39215 1.42001 1.44540 1.50772 1.80931 2.13770 2.29481 2.36254 2.44037 2.65710 3.13904 3.26775 3.41708 3.54288 3.91222 3.94544 4.24856 4.29268 4.37372 4.37637 4.39494 4.44292 4.73420 4.84076 4.87861 5.00410 5.01331 5.04216 5.14801 5.27242 5.45582 5.56688 5.65384 5.87021 6.05479 6.12893 6.24805 6.48953 6.68779 6.80649 7.26550 7.44089 8.90304 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.015790 B = 0.003593 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.797774 B = 7791.359514 C = 8401.396576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.036 6.036 3 C 0.197 3.803 4 N -0.503 5.503 5 C 0.411 3.589 6 O -0.473 6.473 7 C -0.204 4.204 8 C 0.556 3.444 9 O -0.572 6.572 10 N -0.583 5.583 11 C 0.263 3.737 12 C -0.528 4.528 13 H 0.058 0.942 14 C 0.011 3.989 15 N -0.927 5.927 16 Si 0.956 3.044 17 H -0.266 1.266 18 H -0.286 1.286 19 H -0.273 1.273 20 C 0.123 3.877 21 C -0.156 4.156 22 C -0.160 4.160 23 C 0.045 3.955 24 C -0.079 4.079 25 C 0.277 3.723 26 N -0.416 5.416 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.131 0.869 30 H 0.428 0.572 31 H 0.034 0.966 32 H 0.000 1.000 33 H 0.264 0.736 34 H 0.102 0.898 35 H 0.045 0.955 36 H 0.095 0.905 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.089 0.911 40 H 0.052 0.948 41 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.650 -20.874 -6.660 23.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.206 5.794 3 C -0.055 4.055 4 N -0.226 5.226 5 C 0.227 3.773 6 O -0.285 6.285 7 C -0.214 4.214 8 C 0.342 3.658 9 O -0.451 6.451 10 N -0.313 5.313 11 C 0.142 3.858 12 C -0.567 4.567 13 H 0.076 0.924 14 C -0.188 4.188 15 N -0.567 5.567 16 Si 0.781 3.219 17 H -0.192 1.192 18 H -0.212 1.212 19 H -0.198 1.198 20 C 0.020 3.980 21 C -0.214 4.214 22 C -0.218 4.218 23 C 0.016 3.984 24 C -0.092 4.092 25 C -0.040 4.040 26 N -0.092 5.092 27 H 0.109 0.891 28 H 0.118 0.882 29 H 0.149 0.851 30 H 0.292 0.708 31 H 0.052 0.948 32 H 0.018 0.982 33 H 0.073 0.927 34 H 0.120 0.880 35 H 0.064 0.936 36 H 0.113 0.887 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.107 0.893 40 H 0.071 0.929 41 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -6.743 -22.806 -5.676 24.450 hybrid contribution 0.264 2.806 0.319 2.837 sum -6.479 -19.999 -5.358 21.695 Atomic orbital electron populations 1.23678 0.90714 1.08203 1.07689 1.86205 1.11350 0.93542 1.88276 1.23471 0.88865 1.00246 0.92940 1.67709 1.32646 1.02796 1.19458 1.19133 0.84909 0.85792 0.87421 1.84697 1.44770 1.63267 1.35732 1.20756 0.94552 0.94289 1.11833 1.18038 0.79216 0.86707 0.81812 1.90802 1.50101 1.65174 1.39061 1.48276 1.48115 1.10588 1.24309 1.18779 0.94594 0.75801 0.96635 1.21686 1.08923 0.92483 1.33605 0.92375 1.25708 1.00454 0.95821 0.96820 1.70037 1.40880 0.99118 1.46696 0.85589 0.80015 0.77296 0.78981 1.19160 1.21218 1.19817 1.21459 0.95032 0.95003 0.86477 1.22108 1.01698 1.01551 0.96044 1.22207 0.94536 1.03006 1.02023 1.21773 0.99849 0.89889 0.86892 1.16091 0.88349 0.90364 1.14427 1.24852 0.92567 0.92995 0.93538 1.81268 1.09752 1.09024 1.09145 0.89064 0.88236 0.85094 0.70800 0.94771 0.98236 0.92666 0.88026 0.93599 0.88670 0.92207 0.93226 0.89266 0.92878 0.81715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.36 9.64 113.37 1.09 -0.27 16 2 S -0.04 -0.56 21.68 -56.49 -1.22 -1.79 16 3 C 0.20 4.00 7.02 85.26 0.60 4.60 16 4 N -0.50 -10.96 9.11 -302.98 -2.76 -13.72 16 5 C 0.41 10.52 7.75 85.24 0.66 11.18 16 6 O -0.47 -12.00 12.74 -82.83 -1.06 -13.05 16 7 C -0.20 -5.88 4.59 -19.94 -0.09 -5.97 16 8 C 0.56 21.80 6.79 86.62 0.59 22.39 16 9 O -0.57 -28.64 16.32 -0.95 -0.02 -28.65 16 10 N -0.58 -22.43 2.39 -806.16 -1.92 -24.36 16 11 C 0.26 13.09 4.77 85.64 0.41 13.49 16 12 C -0.53 -28.36 7.85 25.60 0.20 -28.15 16 13 H 0.06 3.06 7.59 -2.91 -0.02 3.04 16 14 C 0.01 0.60 5.46 84.65 0.46 1.06 16 15 N -0.93 -54.16 13.29 21.45 0.28 -53.87 16 16 Si 0.96 43.69 29.54 68.60 2.03 45.72 16 17 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 18 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 19 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 20 C 0.12 3.43 2.54 44.99 0.11 3.54 16 21 C -0.16 -3.89 9.07 71.98 0.65 -3.23 16 22 C -0.16 -4.46 8.47 71.98 0.61 -3.85 16 23 C 0.04 1.07 7.57 22.97 0.17 1.25 16 24 C -0.08 -1.70 5.77 -21.05 -0.12 -1.82 16 25 C 0.28 6.28 14.28 88.33 1.26 7.54 16 26 N -0.42 -10.76 18.54 19.00 0.35 -10.40 16 27 H 0.09 1.08 8.12 -2.40 -0.02 1.06 16 28 H 0.10 0.97 8.12 -2.39 -0.02 0.95 16 29 H 0.13 0.67 8.14 -2.40 -0.02 0.65 16 30 H 0.43 6.32 9.06 -74.06 -0.67 5.65 16 31 H 0.03 1.73 6.18 -2.38 -0.01 1.71 16 32 H 0.00 -0.03 7.35 -2.39 -0.02 -0.05 16 33 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 34 H 0.10 2.26 5.20 -2.39 -0.01 2.24 16 35 H 0.04 1.40 6.52 -2.39 -0.02 1.39 16 36 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.05 1.38 6.72 -2.38 -0.02 1.37 16 39 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.05 1.86 6.92 -2.39 -0.02 1.84 16 41 H 0.17 3.82 6.27 -2.91 -0.02 3.80 16 Total: -1.00 -73.49 365.40 2.72 -70.76 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: 0.43 Total: 7.62 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: 6.61 Total: 21.75 kcal Atomic # 7 Polarization: -98.30 SS G_CDS: -4.05 Total: -102.35 kcal Atomic # 8 Polarization: -40.63 SS G_CDS: -1.07 Total: -41.70 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -0.56 SS G_CDS: -1.22 Total: -1.79 kcal Total: -73.49 2.72 -70.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411708381.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.663 kcal (2) G-P(sol) polarization free energy of solvation -73.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds