Wall clock time and date at job start Tue Mar 31 2020 18:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81002 * 1 3 3 C 1.76195 * 100.00205 * 2 1 4 4 N 1.32525 * 119.62291 * 0.24746 * 3 2 1 5 5 C 1.32100 * 121.86510 * 180.31110 * 4 3 2 6 6 O 1.35301 * 119.57591 * 179.71093 * 5 4 3 7 7 C 1.40661 * 120.85855 * 359.43731 * 5 4 3 8 8 C 1.47252 * 120.42811 * 180.25260 * 7 5 4 9 9 O 1.21626 * 120.00350 * 0.02562 * 8 7 5 10 10 N 1.34777 * 120.00035 * 179.97438 * 8 7 5 11 11 C 1.46504 * 119.99719 * 179.97438 * 10 8 7 12 12 C 1.53010 * 109.47009 * 180.02562 * 11 10 8 13 13 C 1.53006 * 109.46958 * 300.00017 * 12 11 10 14 14 C 1.52995 * 109.47089 * 59.99878 * 12 11 10 15 15 C 1.50700 * 109.47006 * 180.02562 * 12 11 10 16 16 H 1.07993 * 120.00271 * 359.97438 * 15 12 11 17 17 C 1.37878 * 119.99252 * 179.97438 * 15 12 11 18 18 N 1.31510 * 120.00804 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99450 * 179.97438 * 17 15 12 20 20 H 1.48496 * 109.47257 * 90.00181 * 19 17 15 21 21 H 1.48500 * 109.47290 * 210.00100 * 19 17 15 22 22 H 1.48506 * 109.47101 * 329.99986 * 19 17 15 23 23 C 1.39800 * 119.14750 * 0.27283 * 7 5 4 24 24 C 1.39569 * 118.30364 * 0.02562 * 23 7 5 25 25 C 1.43200 * 120.46343 * 180.02562 * 24 23 7 26 26 N 3.64672 * 171.15343 * 0.17789 * 2 1 3 27 27 H 1.09002 * 109.47479 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47039 * 299.99976 * 1 2 3 29 29 H 1.09000 * 109.46988 * 59.99774 * 1 2 3 30 30 H 0.96700 * 114.00145 * 269.73276 * 6 5 4 31 31 H 0.96995 * 120.00085 * 0.02562 * 10 8 7 32 32 H 1.08995 * 109.47526 * 299.99432 * 11 10 8 33 33 H 1.08999 * 109.47435 * 60.00575 * 11 10 8 34 34 H 1.09000 * 109.47084 * 59.99709 * 13 12 11 35 35 H 1.08991 * 109.46881 * 180.02562 * 13 12 11 36 36 H 1.09002 * 109.46612 * 300.00187 * 13 12 11 37 37 H 1.08995 * 109.47549 * 60.00233 * 14 12 11 38 38 H 1.08999 * 109.47024 * 180.02562 * 14 12 11 39 39 H 1.09005 * 109.47430 * 300.00080 * 14 12 11 40 40 H 0.96997 * 120.00483 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.84239 * 180.02562 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.0953 2.5804 0.0050 5 6 1.2736 3.8893 -0.0009 6 8 0.1978 4.7098 -0.0013 7 6 2.5674 4.4411 -0.0009 8 6 2.7553 5.9016 -0.0019 9 8 1.7881 6.6392 -0.0022 10 7 3.9989 6.4211 -0.0014 11 6 4.1856 7.8742 -0.0029 12 6 5.6815 8.1962 -0.0026 13 6 6.3312 7.5997 1.2477 14 6 6.3324 7.5970 -1.2508 15 6 5.8736 9.6909 -0.0035 16 1 5.0149 10.3457 -0.0047 17 6 7.1459 10.2222 -0.0029 18 7 8.1917 9.4249 -0.0020 19 14 7.3841 12.0750 -0.0048 20 1 7.4459 12.5676 1.3947 21 1 8.6505 12.4106 -0.7040 22 1 6.2453 12.7198 -0.7067 23 6 3.6728 3.5852 -0.0004 24 6 3.4437 2.2085 -0.0005 25 6 4.5421 1.2897 0.0005 26 7 5.4134 0.5608 0.0017 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.1148 4.9480 -0.8849 31 1 4.7702 5.8330 -0.0007 32 1 3.7233 8.2991 -0.8938 33 1 3.7216 8.3012 0.8862 34 1 6.1922 6.5186 1.2488 35 1 7.3967 7.8294 1.2481 36 1 5.8674 8.0266 2.1369 37 1 5.8696 8.0218 -2.1415 38 1 7.3980 7.8259 -1.2503 39 1 6.1934 6.5158 -1.2497 40 1 9.0867 9.7987 -0.0019 41 1 4.6783 3.9794 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412170179.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:30 Heat of formation + Delta-G solvation = -10.785779 kcal Electronic energy + Delta-G solvation = -25934.434281 eV Core-core repulsion = 22134.432617 eV Total energy + Delta-G solvation = -3800.001664 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.17093 -39.04777 -37.80644 -36.57494 -36.37080 -33.85001 -33.00151 -31.43912 -30.68551 -29.36168 -26.21672 -25.80654 -25.42238 -24.60755 -24.36907 -21.23129 -19.66425 -19.36429 -18.83104 -18.04049 -17.26722 -16.75371 -16.01427 -15.75149 -15.08942 -14.88906 -14.70866 -14.69418 -14.35165 -14.23411 -13.89901 -13.69383 -13.28923 -13.11693 -13.04866 -12.91148 -12.83736 -12.76218 -12.26415 -12.06637 -11.48031 -11.26581 -11.21300 -10.93001 -10.74206 -10.59419 -10.45090 -10.44839 -10.24114 -9.89125 -9.71702 -9.69623 -9.34763 -8.86421 -8.60133 -8.41412 -8.14069 -6.07342 -4.17747 -0.16464 0.32437 0.83094 1.57092 2.22033 2.31401 3.02782 3.09684 3.25408 3.32761 3.34594 3.40238 3.42687 3.55664 4.09835 4.33783 4.36517 4.61430 4.70989 4.80092 4.80725 5.14949 5.19776 5.31073 5.41055 5.59784 6.11683 6.23059 6.41354 6.64928 6.72586 6.81326 6.86726 6.90912 6.93687 7.12482 7.26616 7.27514 7.48146 7.63728 7.83517 7.94074 8.06906 8.30743 8.45553 8.82853 9.48631 10.94123 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.020725 B = 0.002679 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.672334 B =10449.143280 C =11600.890452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.037 6.037 3 C 0.199 3.801 4 N -0.512 5.512 5 C 0.417 3.583 6 O -0.452 6.452 7 C -0.203 4.203 8 C 0.554 3.446 9 O -0.526 6.526 10 N -0.709 5.709 11 C 0.132 3.868 12 C 0.056 3.944 13 C -0.132 4.132 14 C -0.132 4.132 15 C -0.507 4.507 16 H 0.058 0.942 17 C 0.067 3.933 18 N -0.886 5.886 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.035 3.965 24 C -0.081 4.081 25 C 0.254 3.746 26 N -0.387 5.387 27 H 0.105 0.895 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.413 0.587 31 H 0.396 0.604 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.004 0.996 35 H 0.087 0.913 36 H 0.028 0.972 37 H 0.028 0.972 38 H 0.087 0.913 39 H 0.004 0.996 40 H 0.261 0.739 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.901 -17.249 -1.772 21.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.205 5.795 3 C -0.054 4.054 4 N -0.235 5.235 5 C 0.233 3.767 6 O -0.260 6.260 7 C -0.213 4.213 8 C 0.338 3.662 9 O -0.404 6.404 10 N -0.360 5.360 11 C 0.010 3.990 12 C 0.055 3.945 13 C -0.190 4.190 14 C -0.190 4.190 15 C -0.545 4.545 16 H 0.077 0.923 17 C -0.135 4.135 18 N -0.524 5.524 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C 0.006 3.994 24 C -0.094 4.094 25 C -0.062 4.062 26 N -0.063 5.063 27 H 0.124 0.876 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.274 0.726 31 H 0.232 0.768 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.023 0.977 35 H 0.105 0.895 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.105 0.895 39 H 0.023 0.977 40 H 0.071 0.929 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -12.200 -19.164 -1.182 22.749 hybrid contribution 0.083 2.471 -0.410 2.506 sum -12.117 -16.693 -1.592 20.689 Atomic orbital electron populations 1.23570 0.93026 1.06564 1.07699 1.86171 1.08812 0.95586 1.88903 1.23184 0.89180 0.99250 0.93778 1.67660 1.32786 1.03754 1.19332 1.19235 0.85731 0.85237 0.86526 1.84670 1.44466 1.62790 1.34082 1.21201 0.93292 0.96151 1.10647 1.17560 0.84350 0.85914 0.78388 1.90818 1.39482 1.60250 1.49817 1.46272 1.06517 1.10397 1.72821 1.21812 1.00209 0.76036 1.00922 1.18374 0.87204 0.96091 0.92840 1.21856 1.04816 0.94671 0.97671 1.21848 1.04819 0.94646 0.97646 1.20957 0.92389 0.90125 1.51070 0.92337 1.24876 0.95957 0.97923 0.94711 1.69788 0.98114 1.34089 1.50406 0.86568 0.77587 0.85557 0.78145 1.20691 1.21268 1.19877 1.21804 1.00012 0.90129 0.87497 1.16224 0.88249 0.91102 1.13837 1.24945 0.93085 0.93689 0.94498 1.81270 1.09010 1.08049 1.07929 0.87636 0.88612 0.88699 0.72556 0.76838 0.92260 0.92237 0.97671 0.89472 0.95259 0.95271 0.89482 0.97678 0.92932 0.82301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 9.64 101.05 0.97 0.16 16 2 S -0.04 -0.31 21.68 -107.50 -2.33 -2.64 16 3 C 0.20 1.99 7.02 -16.23 -0.11 1.88 16 4 N -0.51 -5.39 9.11 -11.36 -0.10 -5.50 16 5 C 0.42 4.82 7.76 -16.52 -0.13 4.69 16 6 O -0.45 -5.17 11.61 -39.53 -0.46 -5.63 16 7 C -0.20 -2.44 5.90 -104.74 -0.62 -3.06 16 8 C 0.55 8.51 7.76 -12.60 -0.10 8.42 16 9 O -0.53 -9.61 15.16 -16.68 -0.25 -9.87 16 10 N -0.71 -11.28 4.91 -61.43 -0.30 -11.58 16 11 C 0.13 2.58 4.50 -4.03 -0.02 2.56 16 12 C 0.06 1.21 0.50 -155.65 -0.08 1.13 16 13 C -0.13 -2.84 8.08 37.16 0.30 -2.54 16 14 C -0.13 -2.79 8.08 37.15 0.30 -2.49 16 15 C -0.51 -12.72 8.01 -34.44 -0.28 -13.00 16 16 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 17 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 18 N -0.89 -22.94 9.35 55.43 0.52 -22.42 16 19 Si 0.89 20.20 29.54 -169.99 -5.02 15.18 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 23 C 0.03 0.35 9.35 -38.50 -0.36 -0.01 16 24 C -0.08 -0.83 5.77 -106.45 -0.61 -1.44 16 25 C 0.25 2.87 14.28 -22.48 -0.32 2.55 16 26 N -0.39 -5.06 18.54 41.83 0.78 -4.28 16 27 H 0.11 0.39 8.14 -51.92 -0.42 -0.03 16 28 H 0.09 0.60 8.12 -51.92 -0.42 0.18 16 29 H 0.09 0.54 8.12 -51.92 -0.42 0.12 16 30 H 0.41 2.97 9.06 45.56 0.41 3.38 16 31 H 0.40 5.58 4.24 -40.82 -0.17 5.41 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 35 H 0.09 2.09 6.07 -51.93 -0.32 1.78 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 2.08 6.07 -51.93 -0.32 1.76 16 39 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 40 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 41 H 0.16 1.37 6.49 -52.49 -0.34 1.03 16 LS Contribution 361.65 15.07 5.45 5.45 Total: -1.00 -29.53 361.65 -6.81 -36.34 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -3.94 Total: 4.48 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -1.14 Total: 0.46 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.89 Total: -43.79 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.71 Total: -15.50 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: -0.31 SS G_CDS: -2.33 Total: -2.64 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.53 -6.81 -36.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412170179.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.553 kcal (2) G-P(sol) polarization free energy of solvation -29.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds