Wall clock time and date at job start Tue Mar 31 2020 18:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81002 * 1 3 3 C 1.76195 * 100.00205 * 2 1 4 4 N 1.32525 * 119.62291 * 0.24746 * 3 2 1 5 5 C 1.32100 * 121.86510 * 180.31110 * 4 3 2 6 6 O 1.35301 * 119.57591 * 179.71093 * 5 4 3 7 7 C 1.40661 * 120.85855 * 359.43731 * 5 4 3 8 8 C 1.47252 * 120.42811 * 180.25260 * 7 5 4 9 9 O 1.21626 * 120.00350 * 0.02562 * 8 7 5 10 10 N 1.34777 * 120.00035 * 179.97438 * 8 7 5 11 11 C 1.46504 * 119.99719 * 179.97438 * 10 8 7 12 12 C 1.53010 * 109.47009 * 180.02562 * 11 10 8 13 13 C 1.53006 * 109.46958 * 300.00017 * 12 11 10 14 14 C 1.52995 * 109.47089 * 59.99878 * 12 11 10 15 15 C 1.50700 * 109.47006 * 180.02562 * 12 11 10 16 16 H 1.07993 * 120.00271 * 359.97438 * 15 12 11 17 17 C 1.37878 * 119.99252 * 179.97438 * 15 12 11 18 18 N 1.31510 * 120.00804 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99450 * 179.97438 * 17 15 12 20 20 H 1.48496 * 109.47257 * 90.00181 * 19 17 15 21 21 H 1.48500 * 109.47290 * 210.00100 * 19 17 15 22 22 H 1.48506 * 109.47101 * 329.99986 * 19 17 15 23 23 C 1.39800 * 119.14750 * 0.27283 * 7 5 4 24 24 C 1.39569 * 118.30364 * 0.02562 * 23 7 5 25 25 C 1.43200 * 120.46343 * 180.02562 * 24 23 7 26 26 N 3.64672 * 171.15343 * 0.17789 * 2 1 3 27 27 H 1.09002 * 109.47479 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47039 * 299.99976 * 1 2 3 29 29 H 1.09000 * 109.46988 * 59.99774 * 1 2 3 30 30 H 0.96700 * 114.00145 * 269.73276 * 6 5 4 31 31 H 0.96995 * 120.00085 * 0.02562 * 10 8 7 32 32 H 1.08995 * 109.47526 * 299.99432 * 11 10 8 33 33 H 1.08999 * 109.47435 * 60.00575 * 11 10 8 34 34 H 1.09000 * 109.47084 * 59.99709 * 13 12 11 35 35 H 1.08991 * 109.46881 * 180.02562 * 13 12 11 36 36 H 1.09002 * 109.46612 * 300.00187 * 13 12 11 37 37 H 1.08995 * 109.47549 * 60.00233 * 14 12 11 38 38 H 1.08999 * 109.47024 * 180.02562 * 14 12 11 39 39 H 1.09005 * 109.47430 * 300.00080 * 14 12 11 40 40 H 0.96997 * 120.00483 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.84239 * 180.02562 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.0953 2.5804 0.0050 5 6 1.2736 3.8893 -0.0009 6 8 0.1978 4.7098 -0.0013 7 6 2.5674 4.4411 -0.0009 8 6 2.7553 5.9016 -0.0019 9 8 1.7881 6.6392 -0.0022 10 7 3.9989 6.4211 -0.0014 11 6 4.1856 7.8742 -0.0029 12 6 5.6815 8.1962 -0.0026 13 6 6.3312 7.5997 1.2477 14 6 6.3324 7.5970 -1.2508 15 6 5.8736 9.6909 -0.0035 16 1 5.0149 10.3457 -0.0047 17 6 7.1459 10.2222 -0.0029 18 7 8.1917 9.4249 -0.0020 19 14 7.3841 12.0750 -0.0048 20 1 7.4459 12.5676 1.3947 21 1 8.6505 12.4106 -0.7040 22 1 6.2453 12.7198 -0.7067 23 6 3.6728 3.5852 -0.0004 24 6 3.4437 2.2085 -0.0005 25 6 4.5421 1.2897 0.0005 26 7 5.4134 0.5608 0.0017 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.1148 4.9480 -0.8849 31 1 4.7702 5.8330 -0.0007 32 1 3.7233 8.2991 -0.8938 33 1 3.7216 8.3012 0.8862 34 1 6.1922 6.5186 1.2488 35 1 7.3967 7.8294 1.2481 36 1 5.8674 8.0266 2.1369 37 1 5.8696 8.0218 -2.1415 38 1 7.3980 7.8259 -1.2503 39 1 6.1934 6.5158 -1.2497 40 1 9.0867 9.7987 -0.0019 41 1 4.6783 3.9794 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412170179.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:29 Heat of formation + Delta-G solvation = -30.254951 kcal Electronic energy + Delta-G solvation = -25935.278527 eV Core-core repulsion = 22134.432617 eV Total energy + Delta-G solvation = -3800.845911 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.09193 -40.28422 -38.71751 -37.97483 -37.45881 -35.16189 -34.20311 -32.73156 -31.98612 -29.85423 -27.60154 -27.53184 -27.10798 -25.79150 -25.29540 -22.42776 -20.76397 -20.33234 -20.31029 -18.89175 -18.37275 -17.83464 -17.55894 -16.82144 -16.55256 -16.18915 -16.06241 -15.66439 -15.26361 -15.04288 -14.88085 -14.66280 -14.52677 -14.46478 -14.28770 -13.95808 -13.91678 -13.74239 -13.36087 -13.17791 -13.06897 -12.91109 -12.67122 -12.57850 -12.22939 -12.11757 -11.83904 -11.47973 -11.45038 -11.43094 -11.22100 -10.75019 -10.69338 -10.61729 -10.37546 -9.95035 -8.87541 -8.00218 -6.15389 -1.02063 -0.50938 0.11129 0.98815 1.30790 1.43961 1.44791 1.47752 1.54887 2.01497 2.13041 2.32089 2.48615 2.51536 2.62057 3.24094 3.30630 3.49554 3.60634 3.87777 4.31098 4.35449 4.35587 4.43492 4.48638 4.56765 4.72888 4.79832 4.98783 5.04493 5.08117 5.12793 5.23328 5.36132 5.58386 5.70445 5.70633 6.06489 6.19066 6.24841 6.26654 6.46102 6.55980 6.59328 6.89514 7.21920 7.52575 8.98442 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.020725 B = 0.002679 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.672334 B =10449.143280 C =11600.890452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.038 6.038 3 C 0.203 3.797 4 N -0.512 5.512 5 C 0.424 3.576 6 O -0.466 6.466 7 C -0.217 4.217 8 C 0.560 3.440 9 O -0.558 6.558 10 N -0.705 5.705 11 C 0.149 3.851 12 C 0.051 3.949 13 C -0.124 4.124 14 C -0.123 4.123 15 C -0.525 4.525 16 H 0.047 0.953 17 C 0.028 3.972 18 N -0.900 5.900 19 Si 0.942 3.058 20 H -0.281 1.281 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.053 3.947 24 C -0.086 4.086 25 C 0.275 3.725 26 N -0.420 5.420 27 H 0.130 0.870 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.428 0.572 31 H 0.406 0.594 32 H 0.047 0.953 33 H 0.043 0.957 34 H 0.038 0.962 35 H 0.061 0.939 36 H 0.019 0.981 37 H 0.021 0.979 38 H 0.060 0.940 39 H 0.038 0.962 40 H 0.259 0.741 41 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.799 -18.969 -1.913 23.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.205 5.795 3 C -0.050 4.050 4 N -0.236 5.236 5 C 0.239 3.761 6 O -0.277 6.277 7 C -0.227 4.227 8 C 0.346 3.654 9 O -0.438 6.438 10 N -0.357 5.357 11 C 0.026 3.974 12 C 0.050 3.950 13 C -0.182 4.182 14 C -0.181 4.181 15 C -0.564 4.564 16 H 0.065 0.935 17 C -0.171 4.171 18 N -0.538 5.538 19 Si 0.769 3.231 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.199 1.199 23 C 0.024 3.976 24 C -0.099 4.099 25 C -0.041 4.041 26 N -0.095 5.095 27 H 0.148 0.852 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.293 0.707 31 H 0.244 0.756 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.038 0.962 37 H 0.040 0.960 38 H 0.079 0.921 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -13.099 -20.918 -1.335 24.717 hybrid contribution 0.241 2.889 -0.368 2.923 sum -12.858 -18.028 -1.704 22.210 Atomic orbital electron populations 1.23683 0.90668 1.08207 1.07726 1.86292 1.11406 0.93981 1.87835 1.23501 0.89091 1.00164 0.92201 1.67761 1.32678 1.03201 1.19952 1.19287 0.85566 0.85602 0.85657 1.84620 1.44488 1.62927 1.35661 1.20783 0.94209 0.94040 1.13707 1.17876 0.83392 0.87137 0.76980 1.90802 1.40350 1.61482 1.51173 1.46035 1.07430 1.08901 1.73352 1.21326 0.98237 0.78208 0.99643 1.18366 0.88742 0.94507 0.93383 1.21711 1.02784 0.96747 0.96974 1.21695 1.02743 0.96769 0.96908 1.21283 0.92085 0.92125 1.50906 0.93469 1.25425 0.95979 1.00885 0.94850 1.69901 0.98107 1.34987 1.50848 0.85810 0.77287 0.82113 0.77886 1.20698 1.21122 1.19922 1.21888 1.00211 0.89842 0.85656 1.16144 0.88055 0.90853 1.14859 1.24938 0.92615 0.93099 0.93485 1.81297 1.09983 1.09015 1.09237 0.85183 0.88823 0.88353 0.70677 0.75630 0.93423 0.93813 0.94353 0.92030 0.96186 0.95950 0.92094 0.94288 0.93146 0.80642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 9.64 113.37 1.09 -0.09 16 2 S -0.04 -0.54 21.68 -56.49 -1.22 -1.77 16 3 C 0.20 3.61 7.02 85.25 0.60 4.21 16 4 N -0.51 -9.70 9.11 -302.99 -2.76 -12.46 16 5 C 0.42 9.05 7.76 85.24 0.66 9.71 16 6 O -0.47 -10.08 11.61 -64.91 -0.75 -10.83 16 7 C -0.22 -4.84 5.90 -19.94 -0.12 -4.95 16 8 C 0.56 16.53 7.76 86.61 0.67 17.20 16 9 O -0.56 -20.14 15.16 16.85 0.26 -19.88 16 10 N -0.71 -21.40 4.91 -466.52 -2.29 -23.69 16 11 C 0.15 5.78 4.50 86.38 0.39 6.17 16 12 C 0.05 2.20 0.50 -52.92 -0.03 2.17 16 13 C -0.12 -5.23 8.08 71.98 0.58 -4.65 16 14 C -0.12 -5.12 8.08 71.98 0.58 -4.54 16 15 C -0.53 -26.62 8.01 25.60 0.21 -26.42 16 16 H 0.05 2.43 7.74 -2.91 -0.02 2.41 16 17 C 0.03 1.45 5.15 84.66 0.44 1.89 16 18 N -0.90 -46.89 9.35 21.45 0.20 -46.69 16 19 Si 0.94 41.67 29.54 68.60 2.03 43.70 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 21 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 23 C 0.05 0.95 9.35 22.97 0.21 1.16 16 24 C -0.09 -1.56 5.77 -21.05 -0.12 -1.68 16 25 C 0.27 5.67 14.28 88.33 1.26 6.93 16 26 N -0.42 -10.34 18.54 19.00 0.35 -9.99 16 27 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.09 0.93 8.12 -2.39 -0.02 0.91 16 29 H 0.10 0.86 8.12 -2.40 -0.02 0.84 16 30 H 0.43 5.68 9.06 -74.06 -0.67 5.01 16 31 H 0.41 10.44 4.24 -92.71 -0.39 10.05 16 32 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.04 1.31 6.86 -2.39 -0.02 1.29 16 35 H 0.06 2.94 6.07 -2.39 -0.01 2.92 16 36 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.06 2.88 6.07 -2.39 -0.01 2.87 16 39 H 0.04 1.31 6.86 -2.38 -0.02 1.29 16 40 H 0.26 13.10 8.31 -92.71 -0.77 12.33 16 41 H 0.18 2.48 6.49 -2.91 -0.02 2.46 16 Total: -1.00 -63.22 361.65 2.28 -60.94 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.05 Total: 13.57 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 6.43 Total: 7.10 kcal Atomic # 7 Polarization: -88.34 SS G_CDS: -4.50 Total: -92.83 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -0.50 Total: -30.71 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Atomic # 16 Polarization: -0.54 SS G_CDS: -1.22 Total: -1.77 kcal Total: -63.22 2.28 -60.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412170179.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.688 kcal (2) G-P(sol) polarization free energy of solvation -63.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds