Wall clock time and date at job start Tue Mar 31 2020 18:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50702 * 109.47272 * 2 1 4 4 C 1.34676 * 126.59076 * 274.68508 * 3 2 1 5 5 N 1.34123 * 108.02088 * 179.87185 * 4 3 2 6 6 C 1.30496 * 109.25860 * 0.39946 * 5 4 3 7 7 C 1.50695 * 125.65432 * 179.73154 * 6 5 4 8 8 N 1.46501 * 109.47369 * 275.02831 * 7 6 5 9 9 S 1.65601 * 120.00124 * 165.00127 * 8 7 6 10 10 O 1.42102 * 106.40128 * 178.53927 * 9 8 7 11 11 O 1.42103 * 106.39892 * 311.45155 * 9 8 7 12 12 C 1.76192 * 107.22312 * 64.99570 * 9 8 7 13 13 C 1.38638 * 119.74900 * 269.73175 * 12 9 8 14 14 C 1.37626 * 120.24576 * 179.72004 * 13 12 9 15 15 C 1.40710 * 119.74438 * 0.56857 * 14 13 12 16 16 C 1.41388 * 120.24491 * 179.68359 * 15 14 13 17 17 H 1.08004 * 120.00386 * 204.40781 * 16 15 14 18 18 C 1.39948 * 120.00168 * 24.40156 * 16 15 14 19 19 N 1.30824 * 119.99412 * 17.85459 * 18 16 15 20 20 Si 1.86794 * 120.00384 * 197.84795 * 18 16 15 21 21 H 1.48502 * 109.47106 * 90.00441 * 20 18 16 22 22 H 1.48496 * 109.47413 * 209.99981 * 20 18 16 23 23 H 1.48497 * 109.47185 * 330.00465 * 20 18 16 24 24 C 1.40717 * 119.51365 * 359.70352 * 15 14 13 25 25 C 1.37617 * 119.74317 * 359.97438 * 24 15 14 26 26 N 1.35045 * 108.69943 * 359.75313 * 6 5 4 27 27 H 0.97003 * 126.39869 * 179.97438 * 26 6 5 28 28 H 1.08999 * 109.47132 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47613 * 300.00555 * 1 2 3 30 30 H 1.09001 * 109.46888 * 60.00217 * 1 2 3 31 31 H 1.08999 * 109.47351 * 119.99536 * 2 1 3 32 32 H 1.09000 * 109.47613 * 239.99445 * 2 1 3 33 33 H 1.08002 * 125.98511 * 0.02562 * 4 3 2 34 34 H 1.09005 * 109.46964 * 35.02229 * 7 6 5 35 35 H 1.09006 * 109.47482 * 155.02132 * 7 6 5 36 36 H 0.96996 * 119.99844 * 344.99304 * 8 7 6 37 37 H 1.08001 * 119.87321 * 359.97438 * 13 12 9 38 38 H 1.07997 * 120.12178 * 180.27739 * 14 13 12 39 39 H 0.97005 * 119.99588 * 179.97438 * 19 18 16 40 40 H 1.07997 * 120.12987 * 179.97438 * 24 15 14 41 41 H 1.08007 * 119.87331 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2166 2.2071 -1.0777 5 7 2.6707 3.3951 -0.6518 6 6 2.7828 3.3721 0.6481 7 6 3.2660 4.5112 1.5084 8 7 4.7296 4.4908 1.5688 9 16 5.5540 5.8160 2.1225 10 8 6.9327 5.4730 2.0909 11 8 5.0165 6.9384 1.4365 12 6 5.1313 6.0214 3.8206 13 6 4.0468 6.8119 4.1687 14 6 3.7040 6.9747 5.4916 15 6 4.4661 6.3451 6.4929 16 6 4.1274 6.5106 7.8556 17 1 4.8813 6.3843 8.6187 18 6 2.8154 6.8382 8.2158 19 7 1.8383 6.6536 7.3656 20 14 2.4592 7.5389 9.9103 21 1 2.5520 9.0203 9.8629 22 1 1.0920 7.1420 10.3327 23 1 3.4503 7.0118 10.8823 24 6 5.5682 5.5497 6.1281 25 6 5.8886 5.3955 4.7987 26 7 2.3945 2.1583 1.0948 27 1 2.3762 1.8638 2.0189 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 2.0291 1.9304 -2.1047 34 1 2.9333 5.4566 1.0799 35 1 2.8593 4.4049 2.5141 36 1 5.2158 3.7010 1.2846 37 1 3.4664 7.2983 3.3987 38 1 2.8561 7.5873 5.7603 39 1 0.9288 6.8803 7.6154 40 1 6.1602 5.0622 6.8885 41 1 6.7342 4.7859 4.5163 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413431223.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:59 Heat of formation + Delta-G solvation = -18.101744 kcal Electronic energy + Delta-G solvation = -25736.198647 eV Core-core repulsion = 21935.879739 eV Total energy + Delta-G solvation = -3800.318908 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.22676 -37.63158 -36.53104 -35.38334 -35.12665 -34.10381 -34.00011 -32.40194 -30.31289 -29.52011 -29.10851 -25.89459 -25.80342 -23.50078 -21.58112 -21.20137 -21.10908 -20.60087 -18.97226 -17.77824 -17.66661 -17.09545 -16.46258 -15.95373 -15.55983 -15.10144 -14.70980 -14.62351 -14.25655 -14.17131 -13.77023 -13.45649 -13.31531 -13.16770 -12.96302 -12.66368 -12.45193 -12.23421 -11.92405 -11.84275 -11.53048 -11.49323 -11.43360 -11.37135 -11.30399 -11.25285 -10.95683 -10.44202 -10.10435 -10.02081 -9.83073 -9.71466 -9.56528 -9.15793 -8.41136 -8.01999 -7.76195 -7.20722 -4.86107 1.14870 1.88745 2.19514 2.83900 2.85852 2.88862 2.89264 2.93736 2.99879 3.61814 3.79621 4.19008 4.24956 4.52164 4.58370 4.66217 4.97107 5.01580 5.17243 5.27870 5.29789 5.33009 5.44352 5.52524 5.56970 5.76187 5.86129 5.96048 6.03816 6.07915 6.14240 6.62711 6.63224 6.65525 6.85517 6.99190 7.20266 7.23151 7.28932 7.37109 7.58162 7.71755 7.91310 8.00090 8.26342 8.45702 8.59265 9.70621 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011243 B = 0.003213 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.809553 B = 8713.421625 C =10459.252393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.047 4.047 3 C -0.021 4.021 4 C -0.025 4.025 5 N -0.471 5.471 6 C 0.204 3.796 7 C 0.209 3.791 8 N -1.122 6.122 9 S 2.695 3.305 10 O -0.983 6.983 11 O -0.979 6.979 12 C -0.789 4.789 13 C -0.018 4.018 14 C -0.182 4.182 15 C 0.139 3.861 16 C -0.434 4.434 17 H 0.088 0.912 18 C 0.072 3.928 19 N -0.766 5.766 20 Si 0.918 3.082 21 H -0.263 1.263 22 H -0.274 1.274 23 H -0.258 1.258 24 C -0.239 4.239 25 C 0.003 3.997 26 N -0.556 5.556 27 H 0.421 0.579 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.169 0.831 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.411 0.589 37 H 0.105 0.895 38 H 0.123 0.877 39 H 0.289 0.711 40 H 0.100 0.900 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.802 -11.066 -7.271 14.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.086 4.086 3 C -0.138 4.138 4 C -0.174 4.174 5 N -0.190 5.190 6 C -0.061 4.061 7 C 0.081 3.919 8 N -0.878 5.878 9 S 2.794 3.206 10 O -0.973 6.973 11 O -0.969 6.969 12 C -0.885 4.885 13 C -0.038 4.038 14 C -0.203 4.203 15 C 0.135 3.865 16 C -0.461 4.461 17 H 0.106 0.894 18 C -0.150 4.150 19 N -0.388 5.388 20 Si 0.741 3.259 21 H -0.187 1.187 22 H -0.199 1.199 23 H -0.182 1.182 24 C -0.260 4.260 25 C -0.017 4.017 26 N -0.159 5.159 27 H 0.259 0.741 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.186 0.814 34 H 0.126 0.874 35 H 0.103 0.897 36 H 0.244 0.756 37 H 0.123 0.877 38 H 0.141 0.859 39 H 0.100 0.900 40 H 0.118 0.882 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.424 -9.679 -8.349 13.527 hybrid contribution -0.679 -1.173 2.248 2.625 sum -5.102 -10.852 -6.101 13.455 Atomic orbital electron populations 1.21778 0.94371 1.01900 1.02561 1.19991 0.96105 0.89064 1.03428 1.21312 1.08585 0.96533 0.87345 1.22130 1.06341 0.90314 0.98633 1.70281 1.17753 1.22842 1.08162 1.23067 1.04280 0.87511 0.91210 1.19411 0.80166 0.94979 0.97303 1.55822 1.14038 1.35115 1.82832 1.01237 0.72444 0.72134 0.74782 1.93497 1.31567 1.83891 1.88384 1.93498 1.80136 1.49500 1.73733 1.29171 1.15030 1.24462 1.19850 1.20296 0.92874 0.93897 0.96776 1.21348 1.03118 1.04292 0.91495 1.17859 0.89351 0.85893 0.93363 1.19966 0.94960 1.37938 0.93267 0.89410 1.26135 0.95876 0.92689 1.00280 1.69808 1.01487 1.31072 1.36426 0.86135 0.78704 0.80312 0.80772 1.18730 1.19863 1.18196 1.21056 1.03568 1.06800 0.94585 1.20168 0.94555 0.93966 0.93057 1.43217 1.50309 1.12420 1.09990 0.74107 0.92065 0.92734 0.92043 0.91183 0.89456 0.81410 0.87360 0.89674 0.75635 0.87700 0.85924 0.89963 0.88215 0.87780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.89 37.15 0.37 -0.58 16 2 C -0.05 -0.32 6.49 -27.89 -0.18 -0.50 16 3 C -0.02 -0.22 6.49 -81.60 -0.53 -0.75 16 4 C -0.03 -0.30 11.79 -17.81 -0.21 -0.51 16 5 N -0.47 -7.08 11.25 -10.82 -0.12 -7.20 16 6 C 0.20 2.77 7.55 -155.42 -1.17 1.60 16 7 C 0.21 2.96 6.84 -5.20 -0.04 2.92 16 8 N -1.12 -16.94 5.99 -11.65 -0.07 -17.01 16 9 S 2.70 51.02 5.73 -107.50 -0.62 50.41 16 10 O -0.98 -20.61 17.26 -57.17 -0.99 -21.60 16 11 O -0.98 -20.82 16.72 -57.17 -0.96 -21.77 16 12 C -0.79 -16.64 5.97 -39.29 -0.23 -16.87 16 13 C -0.02 -0.40 9.49 -39.66 -0.38 -0.78 16 14 C -0.18 -4.37 8.70 -38.87 -0.34 -4.71 16 15 C 0.14 3.40 5.57 -106.83 -0.60 2.81 16 16 C -0.43 -10.32 9.05 -37.74 -0.34 -10.66 16 17 H 0.09 1.99 7.91 -52.48 -0.41 1.57 16 18 C 0.07 1.61 5.14 -17.34 -0.09 1.52 16 19 N -0.77 -17.44 10.95 55.55 0.61 -16.83 16 20 Si 0.92 16.55 29.60 -169.99 -5.03 11.52 16 21 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 22 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 23 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 24 C -0.24 -5.47 9.80 -38.87 -0.38 -5.85 16 25 C 0.00 0.06 9.49 -39.66 -0.38 -0.32 16 26 N -0.56 -5.99 6.15 -6.54 -0.04 -6.03 16 27 H 0.42 3.55 8.96 -40.82 -0.37 3.18 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.17 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.11 1.60 7.75 -51.93 -0.40 1.19 16 35 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.41 5.52 8.64 -34.47 -0.30 5.22 16 37 H 0.10 2.13 7.59 -52.49 -0.40 1.73 16 38 H 0.12 2.99 6.16 -52.49 -0.32 2.66 16 39 H 0.29 5.91 8.30 -40.82 -0.34 5.57 16 40 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 41 H 0.10 2.03 7.60 -52.48 -0.40 1.63 16 LS Contribution 365.13 15.07 5.50 5.50 Total: -1.00 -31.13 365.13 -11.32 -42.45 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -5.12 Total: 13.25 kcal Atomic # 6 Polarization: -28.19 SS G_CDS: -4.49 Total: -32.69 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 0.38 Total: -47.06 kcal Atomic # 8 Polarization: -41.43 SS G_CDS: -1.94 Total: -43.37 kcal Atomic # 14 Polarization: 16.55 SS G_CDS: -5.03 Total: 11.52 kcal Atomic # 16 Polarization: 51.02 SS G_CDS: -0.62 Total: 50.41 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.13 -11.32 -42.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413431223.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.349 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds