Wall clock time and date at job start Tue Mar 31 2020 18:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50702 * 109.47272 * 2 1 4 4 C 1.34676 * 126.59076 * 274.68508 * 3 2 1 5 5 N 1.34123 * 108.02088 * 179.87185 * 4 3 2 6 6 C 1.30496 * 109.25860 * 0.39946 * 5 4 3 7 7 C 1.50695 * 125.65432 * 179.73154 * 6 5 4 8 8 N 1.46501 * 109.47369 * 275.02831 * 7 6 5 9 9 S 1.65601 * 120.00124 * 165.00127 * 8 7 6 10 10 O 1.42102 * 106.40128 * 178.53927 * 9 8 7 11 11 O 1.42103 * 106.39892 * 311.45155 * 9 8 7 12 12 C 1.76192 * 107.22312 * 64.99570 * 9 8 7 13 13 C 1.38638 * 119.74900 * 269.73175 * 12 9 8 14 14 C 1.37626 * 120.24576 * 179.72004 * 13 12 9 15 15 C 1.40710 * 119.74438 * 0.56857 * 14 13 12 16 16 C 1.41388 * 120.24491 * 179.68359 * 15 14 13 17 17 H 1.08004 * 120.00386 * 204.40781 * 16 15 14 18 18 C 1.39948 * 120.00168 * 24.40156 * 16 15 14 19 19 N 1.30824 * 119.99412 * 17.85459 * 18 16 15 20 20 Si 1.86794 * 120.00384 * 197.84795 * 18 16 15 21 21 H 1.48502 * 109.47106 * 90.00441 * 20 18 16 22 22 H 1.48496 * 109.47413 * 209.99981 * 20 18 16 23 23 H 1.48497 * 109.47185 * 330.00465 * 20 18 16 24 24 C 1.40717 * 119.51365 * 359.70352 * 15 14 13 25 25 C 1.37617 * 119.74317 * 359.97438 * 24 15 14 26 26 N 1.35045 * 108.69943 * 359.75313 * 6 5 4 27 27 H 0.97003 * 126.39869 * 179.97438 * 26 6 5 28 28 H 1.08999 * 109.47132 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47613 * 300.00555 * 1 2 3 30 30 H 1.09001 * 109.46888 * 60.00217 * 1 2 3 31 31 H 1.08999 * 109.47351 * 119.99536 * 2 1 3 32 32 H 1.09000 * 109.47613 * 239.99445 * 2 1 3 33 33 H 1.08002 * 125.98511 * 0.02562 * 4 3 2 34 34 H 1.09005 * 109.46964 * 35.02229 * 7 6 5 35 35 H 1.09006 * 109.47482 * 155.02132 * 7 6 5 36 36 H 0.96996 * 119.99844 * 344.99304 * 8 7 6 37 37 H 1.08001 * 119.87321 * 359.97438 * 13 12 9 38 38 H 1.07997 * 120.12178 * 180.27739 * 14 13 12 39 39 H 0.97005 * 119.99588 * 179.97438 * 19 18 16 40 40 H 1.07997 * 120.12987 * 179.97438 * 24 15 14 41 41 H 1.08007 * 119.87331 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2166 2.2071 -1.0777 5 7 2.6707 3.3951 -0.6518 6 6 2.7828 3.3721 0.6481 7 6 3.2660 4.5112 1.5084 8 7 4.7296 4.4908 1.5688 9 16 5.5540 5.8160 2.1225 10 8 6.9327 5.4730 2.0909 11 8 5.0165 6.9384 1.4365 12 6 5.1313 6.0214 3.8206 13 6 4.0468 6.8119 4.1687 14 6 3.7040 6.9747 5.4916 15 6 4.4661 6.3451 6.4929 16 6 4.1274 6.5106 7.8556 17 1 4.8813 6.3843 8.6187 18 6 2.8154 6.8382 8.2158 19 7 1.8383 6.6536 7.3656 20 14 2.4592 7.5389 9.9103 21 1 2.5520 9.0203 9.8629 22 1 1.0920 7.1420 10.3327 23 1 3.4503 7.0118 10.8823 24 6 5.5682 5.5497 6.1281 25 6 5.8886 5.3955 4.7987 26 7 2.3945 2.1583 1.0948 27 1 2.3762 1.8638 2.0189 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 2.0291 1.9304 -2.1047 34 1 2.9333 5.4566 1.0799 35 1 2.8593 4.4049 2.5141 36 1 5.2158 3.7010 1.2846 37 1 3.4664 7.2983 3.3987 38 1 2.8561 7.5873 5.7603 39 1 0.9288 6.8803 7.6154 40 1 6.1602 5.0622 6.8885 41 1 6.7342 4.7859 4.5163 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413431223.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:58 Heat of formation + Delta-G solvation = -38.922992 kcal Electronic energy + Delta-G solvation = -25737.101524 eV Core-core repulsion = 21935.879739 eV Total energy + Delta-G solvation = -3801.221785 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.14569 -39.37775 -38.17257 -36.80254 -36.51864 -35.79865 -34.77155 -33.30550 -32.06107 -31.27955 -30.05823 -27.61758 -26.81209 -24.20745 -23.30205 -22.94222 -22.04827 -21.50507 -20.45086 -19.41389 -18.88777 -18.59428 -17.92108 -17.25669 -17.14115 -16.18229 -15.87272 -15.77279 -15.45543 -15.30310 -15.08942 -14.94335 -14.51228 -14.30980 -14.09787 -14.03341 -13.93265 -13.58924 -13.31988 -13.12174 -13.02692 -12.91651 -12.89572 -12.87754 -12.59608 -12.45402 -12.02058 -11.98257 -11.54468 -11.36240 -11.23229 -11.06179 -10.96070 -10.53165 -9.79428 -9.54073 -9.29618 -8.87620 -6.64563 -0.38341 0.48152 0.95662 1.07225 1.36522 1.43951 1.50678 1.96311 2.07709 2.11544 2.36089 2.57025 2.92076 3.29696 3.53715 3.61275 3.87670 4.03885 4.17497 4.26199 4.33403 4.35369 4.45219 4.49025 4.69673 4.72321 4.76944 4.88939 4.94561 4.95850 5.07412 5.11714 5.24604 5.36090 5.39463 5.53312 5.60336 5.75787 5.77364 5.93649 6.02591 6.16302 6.39758 6.49853 6.68952 6.81542 7.06161 8.07064 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011243 B = 0.003213 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.809553 B = 8713.421625 C =10459.252393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.045 4.045 3 C -0.002 4.002 4 C -0.051 4.051 5 N -0.505 5.505 6 C 0.185 3.815 7 C 0.208 3.792 8 N -1.107 6.107 9 S 2.729 3.271 10 O -0.999 6.999 11 O -1.000 7.000 12 C -0.794 4.794 13 C -0.019 4.019 14 C -0.206 4.206 15 C 0.112 3.888 16 C -0.464 4.464 17 H 0.090 0.910 18 C 0.037 3.963 19 N -0.792 5.792 20 Si 0.988 3.012 21 H -0.262 1.262 22 H -0.263 1.263 23 H -0.255 1.255 24 C -0.257 4.257 25 C 0.000 4.000 26 N -0.547 5.547 27 H 0.432 0.568 28 H 0.078 0.922 29 H 0.043 0.957 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.186 0.814 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.422 0.578 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.299 0.701 40 H 0.110 0.890 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.342 -12.714 -7.244 15.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.083 4.083 3 C -0.120 4.120 4 C -0.199 4.199 5 N -0.226 5.226 6 C -0.080 4.080 7 C 0.080 3.920 8 N -0.867 5.867 9 S 2.825 3.175 10 O -0.990 6.990 11 O -0.990 6.990 12 C -0.887 4.887 13 C -0.039 4.039 14 C -0.226 4.226 15 C 0.109 3.891 16 C -0.491 4.491 17 H 0.108 0.892 18 C -0.183 4.183 19 N -0.414 5.414 20 Si 0.808 3.192 21 H -0.187 1.187 22 H -0.187 1.187 23 H -0.178 1.178 24 C -0.277 4.277 25 C -0.020 4.020 26 N -0.151 5.151 27 H 0.272 0.728 28 H 0.097 0.903 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.123 0.877 33 H 0.203 0.797 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.257 0.743 37 H 0.136 0.864 38 H 0.130 0.870 39 H 0.110 0.890 40 H 0.128 0.872 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.958 -11.338 -8.296 14.898 hybrid contribution -0.539 -0.767 2.080 2.281 sum -5.497 -12.105 -6.216 14.676 Atomic orbital electron populations 1.21759 0.93911 1.02873 1.01844 1.20151 0.96306 0.86879 1.04988 1.21861 1.06165 0.97503 0.86429 1.22550 1.07251 0.89915 1.00174 1.70199 1.18673 1.24631 1.09068 1.22735 1.06011 0.88290 0.90952 1.19447 0.79128 0.95279 0.98127 1.55382 1.14698 1.34551 1.82067 1.00211 0.71724 0.72065 0.73509 1.93469 1.32949 1.84266 1.88312 1.93471 1.80496 1.51314 1.73744 1.29527 1.14161 1.23644 1.21411 1.20478 0.93221 0.93767 0.96454 1.21354 1.03554 1.05267 0.92408 1.18194 0.90240 0.86640 0.94061 1.20228 0.96061 1.39563 0.93250 0.89192 1.26940 0.95097 0.92305 1.03977 1.69829 1.02166 1.31208 1.38227 0.85085 0.78875 0.79222 0.76009 1.18680 1.18738 1.17835 1.21268 1.03707 1.07103 0.95618 1.20443 0.94987 0.93858 0.92680 1.43202 1.49463 1.11633 1.10845 0.72795 0.90274 0.93759 0.92480 0.89842 0.87674 0.79667 0.88255 0.88602 0.74315 0.86422 0.87049 0.89021 0.87151 0.85687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.89 71.98 0.71 -0.79 16 2 C -0.04 -0.48 6.49 29.85 0.19 -0.28 16 3 C 0.00 -0.04 6.49 40.95 0.27 0.23 16 4 C -0.05 -1.16 11.79 83.53 0.98 -0.17 16 5 N -0.50 -14.87 11.25 -188.13 -2.12 -16.98 16 6 C 0.18 4.85 7.55 138.13 1.04 5.90 16 7 C 0.21 5.75 6.84 85.63 0.59 6.34 16 8 N -1.11 -32.34 5.99 -190.78 -1.14 -33.48 16 9 S 2.73 101.14 5.73 -56.49 -0.32 100.81 16 10 O -1.00 -40.71 17.26 -128.00 -2.21 -42.92 16 11 O -1.00 -42.08 16.72 -128.00 -2.14 -44.22 16 12 C -0.79 -33.22 5.97 22.46 0.13 -33.08 16 13 C -0.02 -0.86 9.49 22.22 0.21 -0.64 16 14 C -0.21 -10.12 8.70 22.73 0.20 -9.93 16 15 C 0.11 5.61 5.57 -21.29 -0.12 5.49 16 16 C -0.46 -22.47 9.05 23.46 0.21 -22.26 16 17 H 0.09 4.14 7.91 -2.91 -0.02 4.12 16 18 C 0.04 1.64 5.14 85.26 0.44 2.08 16 19 N -0.79 -36.45 10.95 21.83 0.24 -36.21 16 20 Si 0.99 33.54 29.60 68.60 2.03 35.57 16 21 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 22 H -0.26 -8.41 7.11 99.48 0.71 -7.70 16 23 H -0.25 -8.43 7.11 99.48 0.71 -7.72 16 24 C -0.26 -11.82 9.80 22.73 0.22 -11.60 16 25 C 0.00 0.01 9.49 22.22 0.21 0.22 16 26 N -0.55 -10.91 6.15 -174.60 -1.07 -11.98 16 27 H 0.43 6.49 8.96 -92.71 -0.83 5.66 16 28 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 31 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.19 3.29 8.06 -2.91 -0.02 3.27 16 34 H 0.10 2.93 7.75 -2.38 -0.02 2.92 16 35 H 0.10 2.43 8.14 -2.38 -0.02 2.41 16 36 H 0.42 10.74 8.64 -96.75 -0.84 9.90 16 37 H 0.12 4.83 7.59 -2.91 -0.02 4.80 16 38 H 0.11 5.63 6.16 -2.91 -0.02 5.61 16 39 H 0.30 12.20 8.30 -92.70 -0.77 11.44 16 40 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 41 H 0.13 4.71 7.60 -2.91 -0.02 4.69 16 Total: -1.00 -66.76 365.13 -2.03 -68.79 By element: Atomic # 1 Polarization: 39.71 SS G_CDS: -0.58 Total: 39.12 kcal Atomic # 6 Polarization: -63.80 SS G_CDS: 5.29 Total: -58.51 kcal Atomic # 7 Polarization: -94.56 SS G_CDS: -4.09 Total: -98.66 kcal Atomic # 8 Polarization: -82.78 SS G_CDS: -4.35 Total: -87.13 kcal Atomic # 14 Polarization: 33.54 SS G_CDS: 2.03 Total: 35.57 kcal Atomic # 16 Polarization: 101.14 SS G_CDS: -0.32 Total: 100.81 kcal Total: -66.76 -2.03 -68.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413431223.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.868 kcal (2) G-P(sol) polarization free energy of solvation -66.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds