Wall clock time and date at job start Tue Mar 31 2020 18:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47283 * 2 1 4 4 C 1.34666 * 126.59184 * 274.69362 * 3 2 1 5 5 N 1.34132 * 108.01891 * 179.87361 * 4 3 2 6 6 C 1.30492 * 109.25337 * 0.39546 * 5 4 3 7 7 C 1.50703 * 125.64723 * 179.77514 * 6 5 4 8 8 N 1.46502 * 109.47481 * 274.98079 * 7 6 5 9 9 S 1.65595 * 120.00146 * 165.96945 * 8 7 6 10 10 O 1.42099 * 106.40094 * 176.35499 * 9 8 7 11 11 O 1.42094 * 106.40209 * 309.27359 * 9 8 7 12 12 C 1.76198 * 107.22199 * 62.81452 * 9 8 7 13 13 C 1.37631 * 120.13071 * 245.80677 * 12 9 8 14 14 C 1.38610 * 120.25308 * 179.97438 * 13 12 9 15 15 C 1.38660 * 120.49830 * 0.02562 * 14 13 12 16 16 C 1.37594 * 120.24789 * 0.02676 * 15 14 13 17 17 C 1.40701 * 120.12459 * 65.53180 * 12 9 8 18 18 C 1.41391 * 120.24767 * 359.97438 * 17 12 9 19 19 H 1.08004 * 120.00134 * 331.26337 * 18 17 12 20 20 C 1.39946 * 120.00186 * 151.26407 * 18 17 12 21 21 N 1.30823 * 119.99732 * 348.83435 * 20 18 17 22 22 Si 1.86800 * 119.99967 * 168.83520 * 20 18 17 23 23 H 1.48499 * 109.47419 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47044 * 120.00067 * 22 20 18 25 25 H 1.48504 * 109.47251 * 239.99971 * 22 20 18 26 26 N 1.35040 * 108.70696 * 359.75513 * 6 5 4 27 27 H 0.96995 * 126.40713 * 179.97438 * 26 6 5 28 28 H 1.08996 * 109.47198 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46707 * 299.99622 * 1 2 3 30 30 H 1.08992 * 109.47339 * 59.99528 * 1 2 3 31 31 H 1.08992 * 109.47339 * 120.00472 * 2 1 3 32 32 H 1.09004 * 109.46707 * 240.00378 * 2 1 3 33 33 H 1.08005 * 125.98874 * 0.02562 * 4 3 2 34 34 H 1.09007 * 109.46969 * 34.97952 * 7 6 5 35 35 H 1.08999 * 109.47450 * 154.97490 * 7 6 5 36 36 H 0.97000 * 119.99490 * 345.96231 * 8 7 6 37 37 H 1.08007 * 119.87360 * 0.02562 * 13 12 9 38 38 H 1.07995 * 119.75391 * 179.97438 * 14 13 12 39 39 H 1.08000 * 119.87373 * 179.97438 * 15 14 13 40 40 H 1.08001 * 120.12720 * 179.97438 * 16 15 14 41 41 H 0.97003 * 119.99497 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2166 2.2071 -1.0776 5 7 2.6708 3.3951 -0.6516 6 6 2.7830 3.3719 0.6483 7 6 3.2655 4.5112 1.5087 8 7 4.7290 4.4912 1.5699 9 16 5.5517 5.8077 2.1464 10 8 6.9264 5.4481 2.1584 11 8 5.0495 6.9348 1.4418 12 6 5.0788 6.0223 3.8301 13 6 4.3722 7.1399 4.2122 14 6 3.9984 7.3110 5.5359 15 6 4.3312 6.3609 6.4895 16 6 5.0380 5.2364 6.1304 17 6 5.4169 5.0488 4.7881 18 6 6.1370 3.8936 4.4061 19 1 6.0406 3.5040 3.4034 20 6 6.9748 3.2548 5.3272 21 7 7.2644 3.8379 6.4620 22 14 7.6796 1.5695 4.9365 23 1 7.2041 1.1319 3.5995 24 1 9.1628 1.6416 4.9346 25 1 7.2327 0.5955 5.9646 26 7 2.3947 2.1581 1.0949 27 1 2.3764 1.8635 2.0189 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 2.0290 1.9305 -2.1046 34 1 2.9326 5.4566 1.0799 35 1 2.8582 4.4051 2.5141 36 1 5.2162 3.7068 1.2729 37 1 4.1073 7.8861 3.4776 38 1 3.4445 8.1912 5.8269 39 1 4.0352 6.5047 7.5182 40 1 5.2966 4.4979 6.8749 41 1 7.8454 3.3952 7.1003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001424632390.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:02 Heat of formation + Delta-G solvation = -11.750337 kcal Electronic energy + Delta-G solvation = -26671.484787 eV Core-core repulsion = 22871.441297 eV Total energy + Delta-G solvation = -3800.043490 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.13246 -37.65548 -36.25957 -35.25217 -34.84524 -34.00154 -33.86194 -32.30557 -30.29434 -29.61657 -28.98473 -25.78919 -25.52078 -23.42444 -21.71647 -21.20866 -21.01918 -20.50604 -18.72777 -17.76807 -17.63127 -16.83390 -16.14166 -15.74255 -15.42591 -14.96978 -14.61880 -14.55483 -14.35436 -14.08373 -13.68923 -13.34976 -13.28145 -13.04959 -12.85962 -12.78803 -12.60070 -11.96867 -11.84589 -11.59109 -11.45303 -11.33632 -11.22827 -11.22147 -11.07716 -11.03829 -10.75553 -10.54147 -10.01033 -9.95805 -9.93114 -9.54676 -9.50650 -8.89552 -8.32046 -8.09218 -7.66155 -7.09017 -4.83163 1.40232 1.99806 2.27300 2.66381 2.90954 2.96320 3.03761 3.04325 3.09131 3.70739 3.99649 4.34578 4.36027 4.63163 4.72716 4.73938 5.02640 5.12150 5.22185 5.34556 5.37268 5.49271 5.57540 5.60318 5.65368 5.85568 5.90180 5.99969 6.13320 6.19620 6.23251 6.36812 6.71277 6.72170 6.89772 7.02343 7.24369 7.33018 7.41369 7.45636 7.61146 7.75525 7.83067 8.09374 8.22668 8.43658 8.58602 9.83610 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010199 B = 0.004513 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.700990 B = 6202.269415 C = 7317.162950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.048 4.048 3 C -0.022 4.022 4 C -0.026 4.026 5 N -0.472 5.472 6 C 0.207 3.793 7 C 0.212 3.788 8 N -1.118 6.118 9 S 2.702 3.298 10 O -0.960 6.960 11 O -0.992 6.992 12 C -0.776 4.776 13 C -0.003 4.003 14 C -0.249 4.249 15 C -0.076 4.076 16 C -0.159 4.159 17 C 0.186 3.814 18 C -0.446 4.446 19 H 0.086 0.914 20 C 0.081 3.919 21 N -0.775 5.775 22 Si 0.915 3.085 23 H -0.256 1.256 24 H -0.267 1.267 25 H -0.270 1.270 26 N -0.555 5.555 27 H 0.421 0.579 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.168 0.832 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.413 0.587 37 H 0.110 0.890 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.125 0.875 41 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.074 -8.974 -5.472 14.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.086 4.086 3 C -0.139 4.139 4 C -0.175 4.175 5 N -0.192 5.192 6 C -0.058 4.058 7 C 0.084 3.916 8 N -0.875 5.875 9 S 2.799 3.201 10 O -0.951 6.951 11 O -0.983 6.983 12 C -0.872 4.872 13 C -0.023 4.023 14 C -0.269 4.269 15 C -0.095 4.095 16 C -0.179 4.179 17 C 0.181 3.819 18 C -0.475 4.475 19 H 0.104 0.896 20 C -0.141 4.141 21 N -0.398 5.398 22 Si 0.739 3.261 23 H -0.180 1.180 24 H -0.192 1.192 25 H -0.195 1.195 26 N -0.158 5.158 27 H 0.259 0.741 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.185 0.815 34 H 0.123 0.877 35 H 0.100 0.900 36 H 0.246 0.754 37 H 0.128 0.872 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.143 0.857 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.244 -7.630 -6.272 13.527 hybrid contribution 0.045 -2.021 1.560 2.553 sum -9.199 -9.650 -4.712 14.140 Atomic orbital electron populations 1.21774 0.94460 1.01814 1.02466 1.19987 0.96006 0.89172 1.03456 1.21282 1.08744 0.96472 0.87392 1.22111 1.06397 0.90394 0.98569 1.70280 1.17814 1.22905 1.08161 1.23087 1.04014 0.87541 0.91190 1.19356 0.80617 0.94652 0.96971 1.55774 1.13692 1.35997 1.81997 1.01122 0.72999 0.71661 0.74307 1.93553 1.30865 1.82819 1.87821 1.93461 1.81603 1.50062 1.73133 1.29889 1.29118 1.06596 1.21559 1.20282 0.92167 0.93950 0.95870 1.20511 1.11086 1.01562 0.93781 1.20921 0.96759 0.94635 0.97185 1.21523 1.00587 0.98543 0.97212 1.17011 0.85145 0.88762 0.90981 1.19872 1.20385 1.08237 0.98966 0.89556 1.25937 0.94876 0.99462 0.93798 1.69782 1.26202 1.36656 1.07194 0.86123 0.79719 0.80313 0.79972 1.17976 1.19199 1.19508 1.43213 1.50204 1.12411 1.10011 0.74061 0.92133 0.92801 0.92083 0.91159 0.89494 0.81490 0.87683 0.90023 0.75375 0.87228 0.88666 0.88809 0.85688 0.90147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.90 37.16 0.37 -0.63 16 2 C -0.05 -0.36 6.49 -27.88 -0.18 -0.54 16 3 C -0.02 -0.25 6.49 -81.60 -0.53 -0.77 16 4 C -0.03 -0.33 11.79 -17.81 -0.21 -0.54 16 5 N -0.47 -7.47 11.25 -10.82 -0.12 -7.59 16 6 C 0.21 3.00 7.54 -155.42 -1.17 1.83 16 7 C 0.21 3.23 6.81 -5.19 -0.04 3.20 16 8 N -1.12 -19.60 5.12 -11.65 -0.06 -19.66 16 9 S 2.70 58.33 4.96 -107.50 -0.53 57.80 16 10 O -0.96 -23.78 16.53 -57.17 -0.94 -24.72 16 11 O -0.99 -22.52 16.53 -57.17 -0.94 -23.46 16 12 C -0.78 -17.86 5.90 -38.87 -0.23 -18.09 16 13 C 0.00 -0.06 9.53 -39.67 -0.38 -0.44 16 14 C -0.25 -5.24 10.05 -39.29 -0.39 -5.63 16 15 C -0.08 -1.64 10.02 -39.66 -0.40 -2.04 16 16 C -0.16 -3.77 8.66 -38.87 -0.34 -4.10 16 17 C 0.19 4.53 5.55 -106.82 -0.59 3.93 16 18 C -0.45 -10.75 7.63 -37.74 -0.29 -11.03 16 19 H 0.09 1.95 5.83 -52.48 -0.31 1.64 16 20 C 0.08 1.87 5.25 -17.34 -0.09 1.78 16 21 N -0.78 -18.54 10.84 55.55 0.60 -17.94 16 22 Si 0.92 17.52 29.57 -169.99 -5.03 12.49 16 23 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 24 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 25 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 26 N -0.55 -6.52 6.15 -6.54 -0.04 -6.56 16 27 H 0.42 4.00 8.96 -40.82 -0.37 3.63 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.17 1.72 8.06 -52.48 -0.42 1.30 16 34 H 0.11 1.61 7.82 -51.93 -0.41 1.21 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.41 6.82 8.47 -34.47 -0.29 6.53 16 37 H 0.11 2.22 7.32 -52.48 -0.38 1.83 16 38 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.13 3.00 6.21 -52.49 -0.33 2.67 16 41 H 0.29 6.17 8.30 -40.82 -0.34 5.83 16 LS Contribution 359.84 15.07 5.42 5.42 Total: -1.00 -31.79 359.84 -11.14 -42.92 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.37 kcal Atomic # 6 Polarization: -28.61 SS G_CDS: -4.47 Total: -33.08 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: 0.38 Total: -51.75 kcal Atomic # 8 Polarization: -46.30 SS G_CDS: -1.89 Total: -48.19 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Atomic # 16 Polarization: 58.33 SS G_CDS: -0.53 Total: 57.80 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.79 -11.14 -42.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424632390.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.173 kcal (2) G-P(sol) polarization free energy of solvation -31.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds