Wall clock time and date at job start Tue Mar 31 2020 18:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47283 * 2 1 4 4 C 1.34666 * 126.59184 * 274.69362 * 3 2 1 5 5 N 1.34132 * 108.01891 * 179.87361 * 4 3 2 6 6 C 1.30492 * 109.25337 * 0.39546 * 5 4 3 7 7 C 1.50703 * 125.64723 * 179.77514 * 6 5 4 8 8 N 1.46502 * 109.47481 * 274.98079 * 7 6 5 9 9 S 1.65595 * 120.00146 * 165.96945 * 8 7 6 10 10 O 1.42099 * 106.40094 * 176.35499 * 9 8 7 11 11 O 1.42094 * 106.40209 * 309.27359 * 9 8 7 12 12 C 1.76198 * 107.22199 * 62.81452 * 9 8 7 13 13 C 1.37631 * 120.13071 * 245.80677 * 12 9 8 14 14 C 1.38610 * 120.25308 * 179.97438 * 13 12 9 15 15 C 1.38660 * 120.49830 * 0.02562 * 14 13 12 16 16 C 1.37594 * 120.24789 * 0.02676 * 15 14 13 17 17 C 1.40701 * 120.12459 * 65.53180 * 12 9 8 18 18 C 1.41391 * 120.24767 * 359.97438 * 17 12 9 19 19 H 1.08004 * 120.00134 * 331.26337 * 18 17 12 20 20 C 1.39946 * 120.00186 * 151.26407 * 18 17 12 21 21 N 1.30823 * 119.99732 * 348.83435 * 20 18 17 22 22 Si 1.86800 * 119.99967 * 168.83520 * 20 18 17 23 23 H 1.48499 * 109.47419 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47044 * 120.00067 * 22 20 18 25 25 H 1.48504 * 109.47251 * 239.99971 * 22 20 18 26 26 N 1.35040 * 108.70696 * 359.75513 * 6 5 4 27 27 H 0.96995 * 126.40713 * 179.97438 * 26 6 5 28 28 H 1.08996 * 109.47198 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46707 * 299.99622 * 1 2 3 30 30 H 1.08992 * 109.47339 * 59.99528 * 1 2 3 31 31 H 1.08992 * 109.47339 * 120.00472 * 2 1 3 32 32 H 1.09004 * 109.46707 * 240.00378 * 2 1 3 33 33 H 1.08005 * 125.98874 * 0.02562 * 4 3 2 34 34 H 1.09007 * 109.46969 * 34.97952 * 7 6 5 35 35 H 1.08999 * 109.47450 * 154.97490 * 7 6 5 36 36 H 0.97000 * 119.99490 * 345.96231 * 8 7 6 37 37 H 1.08007 * 119.87360 * 0.02562 * 13 12 9 38 38 H 1.07995 * 119.75391 * 179.97438 * 14 13 12 39 39 H 1.08000 * 119.87373 * 179.97438 * 15 14 13 40 40 H 1.08001 * 120.12720 * 179.97438 * 16 15 14 41 41 H 0.97003 * 119.99497 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2166 2.2071 -1.0776 5 7 2.6708 3.3951 -0.6516 6 6 2.7830 3.3719 0.6483 7 6 3.2655 4.5112 1.5087 8 7 4.7290 4.4912 1.5699 9 16 5.5517 5.8077 2.1464 10 8 6.9264 5.4481 2.1584 11 8 5.0495 6.9348 1.4418 12 6 5.0788 6.0223 3.8301 13 6 4.3722 7.1399 4.2122 14 6 3.9984 7.3110 5.5359 15 6 4.3312 6.3609 6.4895 16 6 5.0380 5.2364 6.1304 17 6 5.4169 5.0488 4.7881 18 6 6.1370 3.8936 4.4061 19 1 6.0406 3.5040 3.4034 20 6 6.9748 3.2548 5.3272 21 7 7.2644 3.8379 6.4620 22 14 7.6796 1.5695 4.9365 23 1 7.2041 1.1319 3.5995 24 1 9.1628 1.6416 4.9346 25 1 7.2327 0.5955 5.9646 26 7 2.3947 2.1581 1.0949 27 1 2.3764 1.8635 2.0189 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 2.0290 1.9305 -2.1046 34 1 2.9326 5.4566 1.0799 35 1 2.8582 4.4051 2.5141 36 1 5.2162 3.7068 1.2729 37 1 4.1073 7.8861 3.4776 38 1 3.4445 8.1912 5.8269 39 1 4.0352 6.5047 7.5182 40 1 5.2966 4.4979 6.8749 41 1 7.8454 3.3952 7.1003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001424632390.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:01 Heat of formation + Delta-G solvation = -33.119458 kcal Electronic energy + Delta-G solvation = -26672.411422 eV Core-core repulsion = 22871.441297 eV Total energy + Delta-G solvation = -3800.970125 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.12128 -39.38299 -38.06395 -36.68151 -36.50742 -35.66519 -34.75109 -33.28007 -32.03020 -31.35072 -30.01728 -27.37777 -26.74865 -24.18576 -23.44232 -22.93910 -22.02368 -21.47886 -20.33983 -19.51007 -18.81406 -18.42677 -17.68054 -17.26708 -16.97833 -16.14308 -16.04617 -15.74508 -15.39551 -15.27045 -15.05748 -14.92511 -14.48995 -14.48179 -14.26302 -13.98333 -13.67705 -13.33218 -13.23423 -13.00828 -12.94995 -12.85488 -12.83113 -12.80800 -12.49609 -12.42315 -12.11830 -12.00698 -11.65057 -11.22513 -11.17681 -11.03893 -10.94005 -10.39748 -9.84229 -9.42348 -9.27255 -8.79938 -6.62102 -0.25478 0.52621 0.97435 0.98734 1.34956 1.47990 1.49366 1.99222 2.10731 2.13616 2.47452 2.64292 2.96419 3.33085 3.47978 3.81993 3.91300 4.06782 4.20164 4.28409 4.36859 4.46501 4.50762 4.52317 4.70399 4.72291 4.77938 4.78803 4.97063 5.00164 5.08726 5.16195 5.29958 5.37370 5.41193 5.52044 5.72031 5.78069 5.82608 6.02171 6.04888 6.08640 6.42063 6.47962 6.67370 6.83539 7.08471 8.15830 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010199 B = 0.004513 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.700990 B = 6202.269415 C = 7317.162950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.046 4.046 3 C -0.003 4.003 4 C -0.051 4.051 5 N -0.505 5.505 6 C 0.186 3.814 7 C 0.211 3.789 8 N -1.107 6.107 9 S 2.722 3.278 10 O -0.997 6.997 11 O -1.006 7.006 12 C -0.788 4.788 13 C -0.015 4.015 14 C -0.248 4.248 15 C -0.074 4.074 16 C -0.184 4.184 17 C 0.164 3.836 18 C -0.473 4.473 19 H 0.092 0.908 20 C 0.040 3.960 21 N -0.807 5.807 22 Si 0.974 3.026 23 H -0.251 1.251 24 H -0.272 1.272 25 H -0.253 1.253 26 N -0.547 5.547 27 H 0.431 0.569 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.187 0.813 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.418 0.582 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.122 0.878 40 H 0.116 0.884 41 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.322 -10.612 -5.544 16.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.084 4.084 3 C -0.120 4.120 4 C -0.199 4.199 5 N -0.226 5.226 6 C -0.079 4.079 7 C 0.084 3.916 8 N -0.867 5.867 9 S 2.819 3.181 10 O -0.987 6.987 11 O -0.997 6.997 12 C -0.883 4.883 13 C -0.035 4.035 14 C -0.268 4.268 15 C -0.093 4.093 16 C -0.204 4.204 17 C 0.160 3.840 18 C -0.501 4.501 19 H 0.110 0.890 20 C -0.178 4.178 21 N -0.431 5.431 22 Si 0.794 3.206 23 H -0.174 1.174 24 H -0.197 1.197 25 H -0.176 1.176 26 N -0.151 5.151 27 H 0.272 0.728 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.122 0.878 33 H 0.204 0.796 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.253 0.747 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.134 0.866 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.508 -9.256 -6.318 15.363 hybrid contribution 0.326 -1.466 1.548 2.157 sum -10.182 -10.722 -4.769 15.536 Atomic orbital electron populations 1.21747 0.93650 1.02870 1.01927 1.20157 0.96525 0.86869 1.04871 1.21854 1.06268 0.97465 0.86433 1.22546 1.07277 0.89957 1.00141 1.70198 1.18641 1.24741 1.08995 1.22734 1.05849 0.88327 0.90958 1.19439 0.78914 0.95209 0.98083 1.55385 1.14880 1.35092 1.81378 1.00329 0.72183 0.71828 0.73796 1.93496 1.33479 1.83522 1.88193 1.93434 1.81673 1.51295 1.73257 1.30062 1.29204 1.06939 1.22107 1.20592 0.92102 0.93932 0.96883 1.20903 1.10396 1.02276 0.93213 1.21263 0.95484 0.93745 0.98820 1.21577 1.02149 0.99604 0.97062 1.17289 0.85697 0.89407 0.91641 1.20145 1.21284 1.08984 0.99698 0.89016 1.26754 0.94885 1.02606 0.93519 1.69819 1.27022 1.38142 1.08098 0.85262 0.78505 0.76421 0.80417 1.17374 1.19664 1.17649 1.43205 1.49385 1.11646 1.10870 0.72821 0.90301 0.93588 0.92409 0.90007 0.87812 0.79634 0.88169 0.88586 0.74707 0.85857 0.85484 0.85988 0.86649 0.89403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.90 71.98 0.71 -0.85 16 2 C -0.05 -0.56 6.49 29.85 0.19 -0.36 16 3 C 0.00 -0.05 6.49 40.95 0.27 0.22 16 4 C -0.05 -1.25 11.79 83.52 0.98 -0.26 16 5 N -0.50 -15.79 11.25 -188.13 -2.12 -17.91 16 6 C 0.19 5.30 7.54 138.13 1.04 6.34 16 7 C 0.21 6.40 6.81 85.63 0.58 6.98 16 8 N -1.11 -39.03 5.12 -190.78 -0.98 -40.01 16 9 S 2.72 118.87 4.96 -56.49 -0.28 118.59 16 10 O -1.00 -50.37 16.53 -128.00 -2.12 -52.48 16 11 O -1.01 -45.92 16.53 -128.00 -2.12 -48.03 16 12 C -0.79 -36.43 5.90 22.73 0.13 -36.30 16 13 C -0.02 -0.66 9.53 22.21 0.21 -0.45 16 14 C -0.25 -9.98 10.05 22.46 0.23 -9.75 16 15 C -0.07 -3.12 10.02 22.22 0.22 -2.90 16 16 C -0.18 -8.77 8.66 22.73 0.20 -8.58 16 17 C 0.16 8.10 5.55 -21.29 -0.12 7.98 16 18 C -0.47 -23.05 7.63 23.46 0.18 -22.87 16 19 H 0.09 4.19 5.83 -2.91 -0.02 4.17 16 20 C 0.04 1.89 5.25 85.26 0.45 2.34 16 21 N -0.81 -39.08 10.84 21.83 0.24 -38.85 16 22 Si 0.97 35.47 29.57 68.60 2.03 37.50 16 23 H -0.25 -8.77 7.11 99.48 0.71 -8.06 16 24 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 25 H -0.25 -8.40 7.11 99.48 0.71 -7.69 16 26 N -0.55 -12.09 6.15 -174.61 -1.07 -13.16 16 27 H 0.43 7.50 8.96 -92.71 -0.83 6.67 16 28 H 0.08 0.59 8.14 -2.39 -0.02 0.58 16 29 H 0.04 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.19 3.55 8.06 -2.91 -0.02 3.53 16 34 H 0.10 3.11 7.82 -2.38 -0.02 3.09 16 35 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.42 13.89 8.47 -96.75 -0.82 13.07 16 37 H 0.12 4.87 7.32 -2.91 -0.02 4.85 16 38 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 39 H 0.12 4.31 8.06 -2.91 -0.02 4.29 16 40 H 0.12 5.64 6.21 -2.91 -0.02 5.62 16 41 H 0.29 12.78 8.30 -92.71 -0.77 12.01 16 Total: -1.00 -68.50 359.84 -1.69 -70.19 By element: Atomic # 1 Polarization: 43.19 SS G_CDS: -0.56 Total: 42.63 kcal Atomic # 6 Polarization: -63.75 SS G_CDS: 5.28 Total: -58.46 kcal Atomic # 7 Polarization: -106.00 SS G_CDS: -3.93 Total: -109.93 kcal Atomic # 8 Polarization: -96.29 SS G_CDS: -4.23 Total: -100.52 kcal Atomic # 14 Polarization: 35.47 SS G_CDS: 2.03 Total: 37.50 kcal Atomic # 16 Polarization: 118.87 SS G_CDS: -0.28 Total: 118.59 kcal Total: -68.50 -1.69 -70.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424632390.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.070 kcal (2) G-P(sol) polarization free energy of solvation -68.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds