Wall clock time and date at job start Tue Mar 31 2020 18:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 S 1.75471 * 124.60982 * 2 1 4 4 C 1.70449 * 92.52327 * 179.82730 * 3 2 1 5 5 N 1.38793 * 124.64711 * 180.20316 * 4 3 2 6 6 C 1.34774 * 120.00348 * 0.16571 * 5 4 3 7 7 O 1.21294 * 119.99901 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00629 * 179.97438 * 6 5 4 9 9 N 1.46898 * 109.47670 * 179.97438 * 8 6 5 10 10 C 1.47474 * 111.00241 * 265.97249 * 9 8 6 11 11 C 1.53513 * 87.93338 * 221.29305 * 10 9 8 12 12 O 1.42894 * 114.16967 * 272.37979 * 11 10 9 13 13 C 1.50700 * 114.33912 * 139.68132 * 11 10 9 14 14 H 1.07996 * 120.00322 * 266.07488 * 13 11 10 15 15 C 1.37882 * 119.99766 * 86.08590 * 13 11 10 16 16 N 1.31515 * 120.00065 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 119.99760 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47415 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47263 * 119.99807 * 17 15 13 20 20 H 1.48502 * 109.47150 * 239.99445 * 17 15 13 21 21 C 1.47477 * 111.00081 * 169.99866 * 9 8 6 22 22 C 1.36989 * 110.70145 * 0.34642 * 4 3 2 23 23 C 1.43205 * 123.57412 * 179.86091 * 22 4 3 24 24 N 4.77051 * 146.70643 * 180.02562 * 2 1 3 25 25 C 1.32621 * 124.61284 * 180.02562 * 2 1 3 26 26 C 1.50696 * 123.42492 * 0.02562 * 25 2 1 27 27 H 1.08998 * 109.46785 * 269.97036 * 1 2 3 28 28 H 1.08997 * 109.47623 * 29.97278 * 1 2 3 29 29 H 1.09004 * 109.47239 * 149.97934 * 1 2 3 30 30 H 0.97000 * 120.00259 * 180.15838 * 5 4 3 31 31 H 1.08996 * 109.47068 * 300.00264 * 8 6 5 32 32 H 1.09004 * 109.46528 * 59.99668 * 8 6 5 33 33 H 1.08994 * 113.47781 * 336.06485 * 10 9 8 34 34 H 1.09006 * 113.47608 * 106.53001 * 10 9 8 35 35 H 0.96706 * 113.99963 * 273.83655 * 12 11 10 36 36 H 0.96992 * 120.00021 * 180.02562 * 16 15 13 37 37 H 1.09002 * 113.47830 * 253.47461 * 21 9 8 38 38 H 1.09002 * 113.47682 * 23.88060 * 21 9 8 39 39 H 1.09005 * 109.47320 * 269.98781 * 26 25 2 40 40 H 1.08996 * 109.47107 * 29.98702 * 26 25 2 41 41 H 1.09000 * 109.47494 * 149.99034 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.5036 1.4442 0.0000 4 6 3.9477 0.5388 0.0051 5 7 5.2227 1.0870 0.0114 6 6 5.3808 2.4254 0.0172 7 8 4.4088 3.1509 0.0165 8 6 6.7652 3.0208 0.0246 9 7 6.6681 4.4865 0.0293 10 6 6.7348 5.0251 -1.3419 11 6 7.6380 6.1418 -0.7998 12 8 6.9289 7.2801 -0.3064 13 6 8.7890 6.5031 -1.7029 14 1 9.7539 6.0395 -1.5598 15 6 8.6104 7.4259 -2.7117 16 7 7.4354 7.9903 -2.8862 17 14 10.0373 7.8743 -3.8307 18 1 11.2426 7.1057 -3.4282 19 1 9.6867 7.5458 -5.2359 20 1 10.3173 9.3283 -3.7174 21 6 7.9851 5.1028 0.2757 22 6 3.6773 -0.8041 -0.0010 23 6 4.6907 -1.8160 -0.0016 24 7 5.4945 -2.6187 -0.0012 25 6 2.2603 -1.0915 -0.0005 26 6 1.6967 -2.4891 -0.0017 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3634 0.8902 -0.5134 29 1 -0.3634 -0.8898 -0.5142 30 1 6.0002 0.5069 0.0117 31 1 7.2987 2.6888 0.9152 32 1 7.3052 2.6956 -0.8647 33 1 7.2387 4.3619 -2.0449 34 1 5.7756 5.3849 -1.7144 35 1 6.7116 7.9330 -0.9859 36 1 7.3096 8.6391 -3.5961 37 1 8.0855 5.5282 1.2742 38 1 8.8227 4.4598 0.0053 39 1 1.5606 -2.8269 1.0257 40 1 0.7355 -2.4928 -0.5156 41 1 2.3862 -3.1586 -0.5159 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473415019.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:14 Heat of formation + Delta-G solvation = 15.364566 kcal Electronic energy + Delta-G solvation = -25566.467022 eV Core-core repulsion = 21767.599322 eV Total energy + Delta-G solvation = -3798.867700 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.60438 -39.21250 -38.54175 -36.27578 -35.36891 -34.38991 -32.12547 -31.81673 -30.04191 -29.43565 -26.57232 -25.69586 -25.03698 -24.40049 -22.74665 -21.12800 -19.41101 -18.81764 -18.67135 -17.86342 -17.30960 -16.32746 -16.01783 -15.76470 -15.18352 -14.91545 -14.85792 -14.50966 -14.02736 -13.92647 -13.84784 -13.64347 -13.39081 -13.32430 -13.01851 -12.85897 -12.46749 -12.34780 -12.16057 -12.09708 -12.04863 -11.81922 -11.63911 -11.33903 -11.09494 -10.95143 -10.75559 -10.61951 -10.41533 -10.08314 -9.79680 -9.39422 -8.72600 -8.46955 -8.34814 -8.17753 -8.01544 -6.33819 -4.44399 0.53747 1.07343 1.70825 1.79999 2.41591 2.51274 2.57318 3.14051 3.23446 3.26352 3.30613 3.91049 4.18860 4.50118 4.60629 4.69367 4.75583 4.92673 5.03685 5.13260 5.17593 5.26242 5.34583 5.38727 5.41110 5.50424 5.64712 5.73908 5.80072 5.87218 6.07043 6.13878 6.18412 6.20956 6.56115 6.77273 6.90747 7.02308 7.23856 7.36209 7.68126 7.70216 7.79963 7.91108 8.58332 9.26425 9.62880 10.72327 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.020170 B = 0.002508 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.886915 B =11161.529927 C =11717.506736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.262 4.262 3 S 0.329 5.671 4 C 0.073 3.927 5 N -0.641 5.641 6 C 0.510 3.490 7 O -0.466 6.466 8 C 0.003 3.997 9 N -0.450 5.450 10 C -0.022 4.022 11 C 0.251 3.749 12 O -0.568 6.568 13 C -0.537 4.537 14 H 0.068 0.932 15 C 0.071 3.929 16 N -0.895 5.895 17 Si 0.905 3.095 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.280 1.280 21 C 0.003 3.997 22 C -0.133 4.133 23 C 0.281 3.719 24 N -0.433 5.433 25 C -0.047 4.047 26 C -0.095 4.095 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.417 0.583 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.391 0.609 36 H 0.272 0.728 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.215 -16.239 4.537 20.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.379 4.379 3 S 0.593 5.407 4 C -0.149 4.149 5 N -0.286 5.286 6 C 0.297 3.703 7 O -0.337 6.337 8 C -0.129 4.129 9 N -0.173 5.173 10 C -0.151 4.151 11 C 0.209 3.791 12 O -0.381 6.381 13 C -0.575 4.575 14 H 0.086 0.914 15 C -0.131 4.131 16 N -0.535 5.535 17 Si 0.732 3.268 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.206 1.206 21 C -0.125 4.125 22 C -0.155 4.155 23 C -0.034 4.034 24 N -0.111 5.111 25 C -0.058 4.058 26 C -0.154 4.154 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.255 0.745 31 H 0.121 0.879 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.247 0.753 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.537 -15.346 5.424 19.950 hybrid contribution 1.964 -1.565 -1.733 3.052 sum -9.573 -16.911 3.691 19.780 Atomic orbital electron populations 1.20254 0.87518 1.03012 1.02625 1.24691 1.01250 0.98491 1.13497 1.84605 0.87028 1.01021 1.68085 1.22072 0.93577 0.96024 1.03221 1.43251 1.05285 1.08442 1.71585 1.21478 0.93734 0.79951 0.75140 1.90644 1.40454 1.58011 1.44569 1.22617 0.91177 0.95448 1.03697 1.68924 1.27508 1.00482 1.20346 1.24864 1.02065 0.99508 0.88702 1.19291 0.88519 0.83054 0.88254 1.86038 1.77484 1.33554 1.40975 1.21581 0.97107 1.24806 1.13993 0.91416 1.25081 0.96129 0.94994 0.96941 1.69301 1.22281 1.28751 1.33203 0.86336 0.81949 0.78521 0.80004 1.19580 1.20735 1.20583 1.24165 0.89702 0.96822 1.01843 1.15741 0.90310 0.86489 1.22934 1.24919 0.92658 0.92991 0.92814 1.81270 1.09514 1.08946 1.11365 1.19124 0.88750 0.96357 1.01607 1.20507 1.01005 0.91349 1.02558 0.90874 0.91286 0.90738 0.74550 0.87942 0.90322 0.92203 0.90691 0.75282 0.91747 0.90499 0.91468 0.90822 0.90686 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 10.03 36.00 0.36 -0.13 16 2 C -0.26 -2.43 6.43 -36.21 -0.23 -2.66 16 3 S 0.33 3.80 19.94 -107.50 -2.14 1.66 16 4 C 0.07 0.88 6.98 -14.85 -0.10 0.77 16 5 N -0.64 -7.52 5.37 -11.61 -0.06 -7.58 16 6 C 0.51 7.45 7.86 -10.99 -0.09 7.36 16 7 O -0.47 -8.29 13.86 5.54 0.08 -8.22 16 8 C 0.00 0.04 5.30 -4.98 -0.03 0.01 16 9 N -0.45 -8.87 5.82 -246.10 -1.43 -10.30 16 10 C -0.02 -0.50 7.13 -7.56 -0.05 -0.55 16 11 C 0.25 6.11 1.56 -91.24 -0.14 5.97 16 12 O -0.57 -15.15 13.53 -35.23 -0.48 -15.62 16 13 C -0.54 -13.70 8.70 -34.44 -0.30 -14.00 16 14 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 15 C 0.07 1.81 5.39 -17.82 -0.10 1.72 16 16 N -0.89 -23.45 11.02 55.43 0.61 -22.84 16 17 Si 0.90 19.76 29.54 -169.99 -5.02 14.74 16 18 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 21 C 0.00 0.06 7.09 -7.55 -0.05 0.01 16 22 C -0.13 -1.49 5.88 -105.92 -0.62 -2.11 16 23 C 0.28 3.39 14.22 -22.47 -0.32 3.07 16 24 N -0.43 -5.87 18.54 41.83 0.78 -5.10 16 25 C -0.05 -0.45 6.00 -104.02 -0.62 -1.08 16 26 C -0.10 -0.70 9.67 36.00 0.35 -0.35 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.38 6.64 -51.93 -0.34 0.04 16 30 H 0.42 3.95 8.15 -40.82 -0.33 3.62 16 31 H 0.10 1.21 8.08 -51.93 -0.42 0.79 16 32 H 0.08 1.04 7.30 -51.93 -0.38 0.66 16 33 H 0.06 1.26 7.38 -51.93 -0.38 0.88 16 34 H 0.07 1.82 8.14 -51.93 -0.42 1.40 16 35 H 0.39 10.64 6.33 45.56 0.29 10.92 16 36 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 37 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 38 H 0.07 1.21 7.87 -51.93 -0.41 0.80 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.42 6.62 -51.93 -0.34 0.08 16 41 H 0.06 0.50 7.68 -51.93 -0.40 0.10 16 LS Contribution 364.06 15.07 5.49 5.49 Total: -1.00 -30.01 364.06 -8.52 -38.53 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -4.38 Total: 11.22 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -1.95 Total: -1.98 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: -0.11 Total: -45.82 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.40 Total: -23.84 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 16 Polarization: 3.80 SS G_CDS: -2.14 Total: 1.66 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.01 -8.52 -38.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473415019.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.897 kcal (2) G-P(sol) polarization free energy of solvation -30.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds