Wall clock time and date at job start Tue Mar 31 2020 18:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 S 1.75471 * 124.60982 * 2 1 4 4 C 1.70449 * 92.52327 * 179.82730 * 3 2 1 5 5 N 1.38793 * 124.64711 * 180.20316 * 4 3 2 6 6 C 1.34774 * 120.00348 * 0.16571 * 5 4 3 7 7 O 1.21294 * 119.99901 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00629 * 179.97438 * 6 5 4 9 9 N 1.46898 * 109.47670 * 179.97438 * 8 6 5 10 10 C 1.47474 * 111.00241 * 265.97249 * 9 8 6 11 11 C 1.53513 * 87.93338 * 221.29305 * 10 9 8 12 12 O 1.42894 * 114.16967 * 272.37979 * 11 10 9 13 13 C 1.50700 * 114.33912 * 139.68132 * 11 10 9 14 14 H 1.07996 * 120.00322 * 266.07488 * 13 11 10 15 15 C 1.37882 * 119.99766 * 86.08590 * 13 11 10 16 16 N 1.31515 * 120.00065 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 119.99760 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47415 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47263 * 119.99807 * 17 15 13 20 20 H 1.48502 * 109.47150 * 239.99445 * 17 15 13 21 21 C 1.47477 * 111.00081 * 169.99866 * 9 8 6 22 22 C 1.36989 * 110.70145 * 0.34642 * 4 3 2 23 23 C 1.43205 * 123.57412 * 179.86091 * 22 4 3 24 24 N 4.77051 * 146.70643 * 180.02562 * 2 1 3 25 25 C 1.32621 * 124.61284 * 180.02562 * 2 1 3 26 26 C 1.50696 * 123.42492 * 0.02562 * 25 2 1 27 27 H 1.08998 * 109.46785 * 269.97036 * 1 2 3 28 28 H 1.08997 * 109.47623 * 29.97278 * 1 2 3 29 29 H 1.09004 * 109.47239 * 149.97934 * 1 2 3 30 30 H 0.97000 * 120.00259 * 180.15838 * 5 4 3 31 31 H 1.08996 * 109.47068 * 300.00264 * 8 6 5 32 32 H 1.09004 * 109.46528 * 59.99668 * 8 6 5 33 33 H 1.08994 * 113.47781 * 336.06485 * 10 9 8 34 34 H 1.09006 * 113.47608 * 106.53001 * 10 9 8 35 35 H 0.96706 * 113.99963 * 273.83655 * 12 11 10 36 36 H 0.96992 * 120.00021 * 180.02562 * 16 15 13 37 37 H 1.09002 * 113.47830 * 253.47461 * 21 9 8 38 38 H 1.09002 * 113.47682 * 23.88060 * 21 9 8 39 39 H 1.09005 * 109.47320 * 269.98781 * 26 25 2 40 40 H 1.08996 * 109.47107 * 29.98702 * 26 25 2 41 41 H 1.09000 * 109.47494 * 149.99034 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.5036 1.4442 0.0000 4 6 3.9477 0.5388 0.0051 5 7 5.2227 1.0870 0.0114 6 6 5.3808 2.4254 0.0172 7 8 4.4088 3.1509 0.0165 8 6 6.7652 3.0208 0.0246 9 7 6.6681 4.4865 0.0293 10 6 6.7348 5.0251 -1.3419 11 6 7.6380 6.1418 -0.7998 12 8 6.9289 7.2801 -0.3064 13 6 8.7890 6.5031 -1.7029 14 1 9.7539 6.0395 -1.5598 15 6 8.6104 7.4259 -2.7117 16 7 7.4354 7.9903 -2.8862 17 14 10.0373 7.8743 -3.8307 18 1 11.2426 7.1057 -3.4282 19 1 9.6867 7.5458 -5.2359 20 1 10.3173 9.3283 -3.7174 21 6 7.9851 5.1028 0.2757 22 6 3.6773 -0.8041 -0.0010 23 6 4.6907 -1.8160 -0.0016 24 7 5.4945 -2.6187 -0.0012 25 6 2.2603 -1.0915 -0.0005 26 6 1.6967 -2.4891 -0.0017 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3634 0.8902 -0.5134 29 1 -0.3634 -0.8898 -0.5142 30 1 6.0002 0.5069 0.0117 31 1 7.2987 2.6888 0.9152 32 1 7.3052 2.6956 -0.8647 33 1 7.2387 4.3619 -2.0449 34 1 5.7756 5.3849 -1.7144 35 1 6.7116 7.9330 -0.9859 36 1 7.3096 8.6391 -3.5961 37 1 8.0855 5.5282 1.2742 38 1 8.8227 4.4598 0.0053 39 1 1.5606 -2.8269 1.0257 40 1 0.7355 -2.4928 -0.5156 41 1 2.3862 -3.1586 -0.5159 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473415019.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:13 Heat of formation + Delta-G solvation = -7.093827 kcal Electronic energy + Delta-G solvation = -25567.440891 eV Core-core repulsion = 21767.599322 eV Total energy + Delta-G solvation = -3799.841569 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.79048 -40.63641 -39.56015 -37.23248 -36.43319 -36.18069 -34.08885 -32.72850 -31.27008 -30.19398 -28.21863 -26.71814 -26.51953 -25.58867 -24.05552 -22.26155 -20.56030 -20.21103 -19.70435 -19.15922 -18.88711 -17.29642 -17.25621 -16.98405 -16.68350 -16.56656 -15.96358 -15.82313 -15.48917 -15.32517 -14.64346 -14.47646 -14.37304 -14.24560 -14.11030 -13.89833 -13.73631 -13.55256 -13.39696 -13.27870 -13.17300 -12.97688 -12.82874 -12.70974 -12.50515 -12.48016 -12.23407 -12.00126 -11.89015 -11.46550 -11.18165 -10.84064 -10.64460 -10.09954 -9.70767 -9.35455 -9.02706 -8.24842 -6.42719 -0.38950 0.20775 0.92267 0.96690 1.32916 1.42105 1.45794 1.55567 1.56697 1.57382 2.37149 2.37504 2.95851 2.97704 3.17939 3.49033 3.81309 3.94100 4.01811 4.04199 4.20495 4.30033 4.40737 4.42260 4.52319 4.54050 4.73196 4.75075 4.78700 4.91300 4.93131 5.03823 5.16287 5.16576 5.35312 5.35920 5.39809 5.54541 5.76012 5.80815 5.96473 6.21713 6.40153 6.64751 6.70373 7.30969 7.56586 8.80663 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.020170 B = 0.002508 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.886915 B =11161.529927 C =11717.506736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.243 4.243 3 S 0.291 5.709 4 C 0.057 3.943 5 N -0.628 5.628 6 C 0.512 3.488 7 O -0.506 6.506 8 C 0.000 4.000 9 N -0.463 5.463 10 C -0.010 4.010 11 C 0.217 3.783 12 O -0.585 6.585 13 C -0.552 4.552 14 H 0.073 0.927 15 C 0.024 3.976 16 N -0.921 5.921 17 Si 0.969 3.031 18 H -0.263 1.263 19 H -0.280 1.280 20 H -0.281 1.281 21 C 0.017 3.983 22 C -0.127 4.127 23 C 0.297 3.703 24 N -0.458 5.458 25 C -0.056 4.056 26 C -0.094 4.094 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.428 0.572 31 H 0.137 0.863 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.041 0.959 35 H 0.383 0.617 36 H 0.273 0.727 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.124 -18.419 4.636 22.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.361 4.361 3 S 0.555 5.445 4 C -0.165 4.165 5 N -0.274 5.274 6 C 0.300 3.700 7 O -0.379 6.379 8 C -0.131 4.131 9 N -0.186 5.186 10 C -0.139 4.139 11 C 0.176 3.824 12 O -0.396 6.396 13 C -0.590 4.590 14 H 0.091 0.909 15 C -0.176 4.176 16 N -0.562 5.562 17 Si 0.794 3.206 18 H -0.187 1.187 19 H -0.206 1.206 20 H -0.207 1.207 21 C -0.111 4.111 22 C -0.149 4.149 23 C -0.018 4.018 24 N -0.136 5.136 25 C -0.067 4.067 26 C -0.152 4.152 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.113 0.887 30 H 0.268 0.732 31 H 0.155 0.845 32 H 0.117 0.883 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.238 0.762 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.115 0.885 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.435 -17.574 5.539 21.687 hybrid contribution 1.837 -0.973 -1.726 2.703 sum -9.598 -18.548 3.813 21.229 Atomic orbital electron populations 1.20426 0.85272 1.04186 1.03853 1.24930 1.02415 0.96783 1.11932 1.84776 0.88092 1.03131 1.68504 1.22123 0.93469 0.96221 1.04664 1.42956 1.05862 1.07631 1.70927 1.21417 0.93249 0.80606 0.74710 1.90651 1.41488 1.59219 1.46565 1.22720 0.91899 0.92171 1.06314 1.68731 1.27472 1.04126 1.18261 1.24593 0.99787 0.99352 0.90196 1.19745 0.88891 0.83223 0.90561 1.86020 1.78033 1.34406 1.41187 1.21880 0.97652 1.25148 1.14352 0.90913 1.25861 0.98348 0.95044 0.98344 1.69394 1.23902 1.29200 1.33727 0.85338 0.79215 0.77985 0.78043 1.18749 1.20558 1.20685 1.24059 0.90824 0.95761 1.00453 1.15932 0.90994 0.85890 1.22110 1.24954 0.92213 0.92564 0.92085 1.81288 1.10278 1.09805 1.12246 1.19415 0.87932 0.97718 1.01668 1.20587 1.01722 0.89449 1.03491 0.89532 0.90938 0.88695 0.73243 0.84520 0.88285 0.91274 0.94003 0.76217 0.91667 0.90574 0.88785 0.89750 0.88542 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.03 71.23 0.71 -0.10 16 2 C -0.24 -4.08 6.43 24.52 0.16 -3.92 16 3 S 0.29 6.65 19.94 -56.49 -1.13 5.53 16 4 C 0.06 1.31 6.98 83.30 0.58 1.89 16 5 N -0.63 -14.06 5.37 -309.03 -1.66 -15.72 16 6 C 0.51 14.60 7.86 87.66 0.69 15.29 16 7 O -0.51 -18.24 13.86 -3.07 -0.04 -18.28 16 8 C 0.00 0.01 5.30 85.56 0.45 0.46 16 9 N -0.46 -17.98 5.82 -932.92 -5.43 -23.41 16 10 C -0.01 -0.44 7.13 83.57 0.60 0.16 16 11 C 0.22 10.66 1.56 -11.19 -0.02 10.65 16 12 O -0.58 -32.16 13.53 -148.98 -2.02 -34.17 16 13 C -0.55 -28.13 8.70 25.60 0.22 -27.91 16 14 H 0.07 3.53 7.81 -2.91 -0.02 3.51 16 15 C 0.02 1.21 5.39 84.66 0.46 1.66 16 16 N -0.92 -49.29 11.02 21.45 0.24 -49.05 16 17 Si 0.97 40.40 29.54 68.60 2.03 42.43 16 18 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 19 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 20 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 21 C 0.02 0.68 7.09 83.57 0.59 1.27 16 22 C -0.13 -2.67 5.88 -20.71 -0.12 -2.79 16 23 C 0.30 6.72 14.22 88.33 1.26 7.97 16 24 N -0.46 -11.82 18.54 19.00 0.35 -11.47 16 25 C -0.06 -0.98 6.00 -19.41 -0.12 -1.09 16 26 C -0.09 -1.12 9.67 71.23 0.69 -0.43 16 27 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.09 0.63 6.64 -2.38 -0.02 0.61 16 30 H 0.43 7.40 8.15 -92.71 -0.76 6.65 16 31 H 0.14 2.80 8.08 -2.39 -0.02 2.78 16 32 H 0.10 2.35 7.30 -2.39 -0.02 2.33 16 33 H 0.07 2.90 7.38 -2.39 -0.02 2.88 16 34 H 0.04 2.12 8.14 -2.38 -0.02 2.10 16 35 H 0.38 21.76 6.33 -74.05 -0.47 21.29 16 36 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 37 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 38 H 0.09 3.14 7.87 -2.39 -0.02 3.12 16 39 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 40 H 0.10 0.73 6.62 -2.39 -0.02 0.71 16 41 H 0.06 0.77 7.68 -2.39 -0.02 0.75 16 Total: -1.00 -66.01 364.06 -1.62 -67.64 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: -0.12 Total: 33.38 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 6.15 Total: 3.13 kcal Atomic # 7 Polarization: -93.14 SS G_CDS: -6.50 Total: -99.65 kcal Atomic # 8 Polarization: -50.39 SS G_CDS: -2.06 Total: -52.45 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Atomic # 16 Polarization: 6.65 SS G_CDS: -1.13 Total: 5.53 kcal Total: -66.01 -1.62 -67.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473415019.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.543 kcal (2) G-P(sol) polarization free energy of solvation -66.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds