Wall clock time and date at job start Tue Mar 31 2020 18:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09000 * 109.47521 * 55.00146 * 3 2 1 5 5 C 1.53003 * 109.47332 * 175.00312 * 3 2 1 6 6 N 1.46501 * 109.47349 * 175.00381 * 5 3 2 7 7 C 1.34775 * 119.99874 * 180.02562 * 6 5 3 8 8 O 1.21729 * 120.00190 * 359.97438 * 7 6 5 9 9 C 1.46428 * 119.99572 * 179.97438 * 7 6 5 10 10 C 1.36809 * 125.99524 * 179.71298 * 9 7 6 11 11 N 1.30360 * 115.31230 * 179.83900 * 10 9 7 12 12 C 1.30924 * 117.31825 * 0.46512 * 11 10 9 13 13 C 1.46859 * 125.29084 * 179.78040 * 12 11 10 14 14 C 1.36426 * 125.97337 * 359.95348 * 13 12 11 15 15 C 1.40615 * 106.71707 * 180.02562 * 14 13 12 16 16 C 1.34951 * 107.09094 * 0.02562 * 15 14 13 17 17 O 1.34171 * 108.74627 * 359.73350 * 16 15 14 18 18 S 1.76126 * 109.42189 * 359.74403 * 12 11 10 19 19 N 1.46505 * 109.47130 * 295.00060 * 3 2 1 20 20 C 1.36931 * 119.99788 * 84.99932 * 19 3 2 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 3 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 3 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48508 * 109.46872 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 119.99997 * 24 22 20 27 27 H 1.48498 * 109.47018 * 240.00044 * 24 22 20 28 28 H 1.08995 * 109.46828 * 59.99774 * 1 2 3 29 29 H 1.08994 * 109.46841 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46777 * 299.99691 * 1 2 3 31 31 H 1.09000 * 109.47154 * 239.99920 * 2 1 3 32 32 H 1.09000 * 109.47681 * 120.00001 * 2 1 3 33 33 H 1.09009 * 109.46837 * 294.99855 * 5 3 2 34 34 H 1.09000 * 109.47433 * 54.99587 * 5 3 2 35 35 H 0.97000 * 120.00018 * 359.97438 * 6 5 3 36 36 H 1.08007 * 122.34562 * 0.03539 * 10 9 7 37 37 H 1.07997 * 126.64053 * 359.97438 * 14 13 12 38 38 H 1.07993 * 126.45712 * 180.02562 * 15 14 13 39 39 H 1.08002 * 125.62925 * 180.02562 * 16 15 14 40 40 H 0.97000 * 119.99792 * 264.99726 * 19 3 2 41 41 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4443 0.1256 6 7 4.0631 2.8168 0.0060 7 6 5.3858 3.0629 0.0858 8 8 6.1664 2.1449 0.2578 9 6 5.8837 4.4347 -0.0344 10 6 7.1937 4.8234 0.0332 11 7 7.4033 6.1026 -0.1044 12 6 6.3555 6.8677 -0.2801 13 6 6.3886 8.3262 -0.4488 14 6 7.5067 9.1078 -0.4480 15 6 7.0745 10.4322 -0.6388 16 6 5.7296 10.3991 -0.7453 17 8 5.3197 9.1263 -0.6357 18 16 4.9001 5.8758 -0.2839 19 7 1.6524 2.0975 -1.2518 20 6 0.4157 2.6734 -1.3688 21 1 -0.2740 2.6452 -0.5381 22 6 0.0506 3.2991 -2.5530 23 7 0.8912 3.3339 -3.5651 24 14 -1.6337 4.0915 -2.7099 25 1 -2.3839 3.9152 -1.4404 26 1 -1.4746 5.5403 -2.9943 27 1 -2.3819 3.4484 -3.8198 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8935 -0.5138 0.8899 33 1 3.8500 1.0377 1.0960 34 1 3.9955 0.8311 -0.6660 35 1 3.4411 3.5483 -0.1315 36 1 7.9982 4.1192 0.1866 37 1 8.5263 8.7741 -0.3240 38 1 7.7008 11.3105 -0.6904 39 1 5.0894 11.2552 -0.8987 40 1 2.2720 2.1232 -1.9978 41 1 0.6359 3.7708 -4.3927 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481871752.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:35 Heat of formation + Delta-G solvation = 34.734877 kcal Electronic energy + Delta-G solvation = -25408.223906 eV Core-core repulsion = 21610.196166 eV Total energy + Delta-G solvation = -3798.027740 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.86082 -39.98429 -38.92256 -36.73649 -33.83941 -33.44305 -32.45085 -31.87137 -29.92334 -29.39979 -27.79979 -25.84684 -23.92942 -22.92618 -22.25147 -21.77173 -20.99855 -20.17580 -19.54454 -18.78354 -17.38187 -17.31886 -16.54509 -16.48821 -15.86313 -15.48626 -15.06408 -14.87990 -14.40647 -14.19809 -13.92061 -13.84804 -13.30192 -13.23371 -13.15363 -13.05704 -12.83981 -12.69379 -12.21811 -11.60666 -11.50012 -11.01835 -10.93716 -10.79096 -10.48692 -10.39242 -10.23538 -10.19519 -10.04433 -9.93616 -9.82829 -9.58569 -9.51890 -9.01397 -8.81636 -8.23247 -7.09057 -5.85941 -3.15715 -0.25345 0.95017 1.39876 1.43307 2.17322 2.27608 2.67556 3.25825 3.34645 3.37053 3.42864 3.44814 4.06210 4.50054 4.58635 4.65201 4.75537 4.95451 5.12936 5.33350 5.39453 5.41433 5.50072 5.52944 5.65168 5.85595 5.90465 5.91009 5.91153 6.08387 6.10185 6.37011 6.45087 6.51927 6.55692 6.65231 6.75242 6.96804 7.20883 7.36084 7.62813 7.70076 8.29047 8.31448 9.43116 9.97005 10.32987 11.35817 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010722 B = 0.003424 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.799162 B = 8175.252989 C =10399.576894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.162 3.838 4 H 0.055 0.945 5 C 0.114 3.886 6 N -0.704 5.704 7 C 0.592 3.408 8 O -0.537 6.537 9 C -0.280 4.280 10 C 0.118 3.882 11 N -0.458 5.458 12 C 0.131 3.869 13 C 0.030 3.970 14 C -0.130 4.130 15 C -0.220 4.220 16 C -0.009 4.009 17 O -0.165 6.165 18 S 0.200 5.800 19 N -0.722 5.722 20 C -0.239 4.239 21 H 0.074 0.926 22 C -0.009 4.009 23 N -0.928 5.928 24 Si 0.901 3.099 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.085 0.915 29 H 0.033 0.967 30 H 0.040 0.960 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.409 0.591 36 H 0.193 0.807 37 H 0.161 0.839 38 H 0.157 0.843 39 H 0.212 0.788 40 H 0.385 0.615 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.571 10.448 8.041 16.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.051 3.949 4 H 0.073 0.927 5 C -0.010 4.010 6 N -0.355 5.355 7 C 0.376 3.624 8 O -0.416 6.416 9 C -0.405 4.405 10 C -0.042 4.042 11 N -0.173 5.173 12 C -0.139 4.139 13 C -0.023 4.023 14 C -0.154 4.154 15 C -0.239 4.239 16 C -0.079 4.079 17 O -0.060 6.060 18 S 0.460 5.540 19 N -0.365 5.365 20 C -0.370 4.370 21 H 0.092 0.908 22 C -0.206 4.206 23 N -0.576 5.576 24 Si 0.732 3.268 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.104 0.896 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.245 0.755 36 H 0.210 0.790 37 H 0.179 0.821 38 H 0.175 0.825 39 H 0.229 0.771 40 H 0.219 0.781 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.942 10.143 8.065 16.333 hybrid contribution -0.307 0.312 -0.508 0.670 sum 9.636 10.455 7.557 16.102 Atomic orbital electron populations 1.21768 0.95649 0.99682 1.03280 1.22059 0.97037 0.98183 1.00117 1.20589 0.89667 0.93063 0.91544 0.92741 1.21781 0.95906 0.81753 1.01556 1.45916 1.06276 1.11440 1.71844 1.16603 0.82869 0.85564 0.77372 1.90821 1.56060 1.44202 1.50543 1.26157 0.98080 0.98761 1.17483 1.22208 0.95118 0.90202 0.96701 1.66338 1.30304 1.04247 1.16448 1.24237 0.91924 0.93623 1.04093 1.18583 0.85586 0.87203 1.10921 1.21947 0.99276 0.91996 1.02216 1.21860 0.95030 0.98296 1.08720 1.24373 0.96055 0.84156 1.03310 1.84090 1.34345 1.17478 1.70048 1.85511 1.08965 0.96870 1.62606 1.42479 1.16862 1.65908 1.11239 1.19243 0.91939 1.27676 0.98157 0.90794 1.24732 0.98035 1.01433 0.96388 1.69669 1.35140 1.48689 1.04057 0.86212 0.84091 0.78952 0.77507 1.20504 1.21878 1.21889 0.89631 0.94823 0.94111 0.92435 0.93763 0.91342 0.91313 0.75469 0.79036 0.82140 0.82519 0.77109 0.78095 0.93490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.18 37.16 0.34 -2.21 16 2 C -0.13 -2.24 5.61 -26.73 -0.15 -2.39 16 3 C 0.16 2.93 2.59 -67.93 -0.18 2.75 16 4 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 5 C 0.11 1.90 5.23 -4.04 -0.02 1.88 16 6 N -0.70 -11.97 5.38 -61.69 -0.33 -12.30 16 7 C 0.59 10.14 7.78 -12.96 -0.10 10.04 16 8 O -0.54 -10.29 16.86 5.16 0.09 -10.20 16 9 C -0.28 -4.27 6.50 -36.80 -0.24 -4.50 16 10 C 0.12 1.64 11.04 -18.69 -0.21 1.44 16 11 N -0.46 -6.40 10.47 -11.00 -0.12 -6.51 16 12 C 0.13 1.80 7.44 -14.45 -0.11 1.69 16 13 C 0.03 0.37 7.21 -36.75 -0.26 0.11 16 14 C -0.13 -1.34 10.79 -39.34 -0.42 -1.76 16 15 C -0.22 -1.75 10.88 -39.85 -0.43 -2.19 16 16 C -0.01 -0.07 12.08 29.56 0.36 0.29 16 17 O -0.16 -1.92 10.67 4.62 0.05 -1.87 16 18 S 0.20 2.86 22.52 -107.50 -2.42 0.44 16 19 N -0.72 -16.20 4.51 -53.42 -0.24 -16.44 16 20 C -0.24 -5.96 7.75 -15.06 -0.12 -6.08 16 21 H 0.07 1.81 7.32 -52.49 -0.38 1.42 16 22 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 23 N -0.93 -26.37 13.06 55.49 0.72 -25.64 16 24 Si 0.90 21.20 29.55 -169.99 -5.02 16.18 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H 0.08 1.77 5.99 -51.93 -0.31 1.45 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.41 7.13 7.30 -40.82 -0.30 6.83 16 36 H 0.19 2.34 8.06 -52.48 -0.42 1.92 16 37 H 0.16 1.48 8.06 -52.49 -0.42 1.05 16 38 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.21 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.38 9.50 7.80 -40.82 -0.32 9.18 16 41 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 369.82 15.07 5.57 5.57 Total: -1.00 -30.23 369.82 -8.43 -38.66 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -5.09 Total: 13.38 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -1.64 Total: -1.27 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: 0.04 Total: -60.89 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.14 Total: -12.07 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -2.42 Total: 0.44 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.23 -8.43 -38.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481871752.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.392 kcal (2) G-P(sol) polarization free energy of solvation -30.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds