Wall clock time and date at job start Tue Mar 31 2020 18:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09000 * 109.47521 * 55.00146 * 3 2 1 5 5 C 1.53003 * 109.47332 * 175.00312 * 3 2 1 6 6 N 1.46501 * 109.47349 * 175.00381 * 5 3 2 7 7 C 1.34775 * 119.99874 * 180.02562 * 6 5 3 8 8 O 1.21729 * 120.00190 * 359.97438 * 7 6 5 9 9 C 1.46428 * 119.99572 * 179.97438 * 7 6 5 10 10 C 1.36809 * 125.99524 * 179.71298 * 9 7 6 11 11 N 1.30360 * 115.31230 * 179.83900 * 10 9 7 12 12 C 1.30924 * 117.31825 * 0.46512 * 11 10 9 13 13 C 1.46859 * 125.29084 * 179.78040 * 12 11 10 14 14 C 1.36426 * 125.97337 * 359.95348 * 13 12 11 15 15 C 1.40615 * 106.71707 * 180.02562 * 14 13 12 16 16 C 1.34951 * 107.09094 * 0.02562 * 15 14 13 17 17 O 1.34171 * 108.74627 * 359.73350 * 16 15 14 18 18 S 1.76126 * 109.42189 * 359.74403 * 12 11 10 19 19 N 1.46505 * 109.47130 * 295.00060 * 3 2 1 20 20 C 1.36931 * 119.99788 * 84.99932 * 19 3 2 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 3 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 3 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48508 * 109.46872 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 119.99997 * 24 22 20 27 27 H 1.48498 * 109.47018 * 240.00044 * 24 22 20 28 28 H 1.08995 * 109.46828 * 59.99774 * 1 2 3 29 29 H 1.08994 * 109.46841 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46777 * 299.99691 * 1 2 3 31 31 H 1.09000 * 109.47154 * 239.99920 * 2 1 3 32 32 H 1.09000 * 109.47681 * 120.00001 * 2 1 3 33 33 H 1.09009 * 109.46837 * 294.99855 * 5 3 2 34 34 H 1.09000 * 109.47433 * 54.99587 * 5 3 2 35 35 H 0.97000 * 120.00018 * 359.97438 * 6 5 3 36 36 H 1.08007 * 122.34562 * 0.03539 * 10 9 7 37 37 H 1.07997 * 126.64053 * 359.97438 * 14 13 12 38 38 H 1.07993 * 126.45712 * 180.02562 * 15 14 13 39 39 H 1.08002 * 125.62925 * 180.02562 * 16 15 14 40 40 H 0.97000 * 119.99792 * 264.99726 * 19 3 2 41 41 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4443 0.1256 6 7 4.0631 2.8168 0.0060 7 6 5.3858 3.0629 0.0858 8 8 6.1664 2.1449 0.2578 9 6 5.8837 4.4347 -0.0344 10 6 7.1937 4.8234 0.0332 11 7 7.4033 6.1026 -0.1044 12 6 6.3555 6.8677 -0.2801 13 6 6.3886 8.3262 -0.4488 14 6 7.5067 9.1078 -0.4480 15 6 7.0745 10.4322 -0.6388 16 6 5.7296 10.3991 -0.7453 17 8 5.3197 9.1263 -0.6357 18 16 4.9001 5.8758 -0.2839 19 7 1.6524 2.0975 -1.2518 20 6 0.4157 2.6734 -1.3688 21 1 -0.2740 2.6452 -0.5381 22 6 0.0506 3.2991 -2.5530 23 7 0.8912 3.3339 -3.5651 24 14 -1.6337 4.0915 -2.7099 25 1 -2.3839 3.9152 -1.4404 26 1 -1.4746 5.5403 -2.9943 27 1 -2.3819 3.4484 -3.8198 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8935 -0.5138 0.8899 33 1 3.8500 1.0377 1.0960 34 1 3.9955 0.8311 -0.6660 35 1 3.4411 3.5483 -0.1315 36 1 7.9982 4.1192 0.1866 37 1 8.5263 8.7741 -0.3240 38 1 7.7008 11.3105 -0.6904 39 1 5.0894 11.2552 -0.8987 40 1 2.2720 2.1232 -1.9978 41 1 0.6359 3.7708 -4.3927 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481871752.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:35 Heat of formation + Delta-G solvation = 14.637571 kcal Electronic energy + Delta-G solvation = -25409.095391 eV Core-core repulsion = 21610.196166 eV Total energy + Delta-G solvation = -3798.899225 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.62967 -41.20313 -40.15749 -38.27865 -35.35862 -34.24606 -34.16957 -32.84424 -31.53200 -30.60809 -29.18074 -26.90135 -25.63636 -24.35776 -23.23929 -22.54784 -22.24121 -21.62203 -20.55955 -20.00273 -19.14126 -18.30828 -17.75962 -17.32678 -17.04319 -17.00348 -16.40285 -16.07524 -15.81046 -15.54290 -15.23989 -15.16028 -14.87243 -14.57902 -14.17938 -13.99478 -13.90259 -13.80067 -13.53102 -13.00766 -12.82754 -12.79902 -12.71734 -12.36622 -12.08305 -11.88206 -11.65290 -11.46244 -11.33127 -11.27436 -11.05004 -10.89703 -10.86832 -10.55769 -10.18165 -9.14363 -8.99104 -7.88176 -5.15632 -1.31732 -0.13876 0.33308 0.50596 1.33793 1.47826 1.48495 1.50940 1.58484 1.71111 1.99914 2.07636 2.59101 3.20250 3.45853 3.62692 3.70458 3.87694 3.91974 3.96600 4.02429 4.13526 4.35671 4.46540 4.55836 4.60004 4.71304 4.86217 4.88874 4.93128 4.96472 5.07396 5.09738 5.20298 5.35440 5.44255 5.54730 5.61309 5.73106 5.90057 6.24649 6.31753 6.36681 6.94361 7.39795 8.10442 8.35523 9.34846 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010722 B = 0.003424 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.799162 B = 8175.252989 C =10399.576894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.162 3.838 4 H 0.059 0.941 5 C 0.120 3.880 6 N -0.706 5.706 7 C 0.595 3.405 8 O -0.562 6.562 9 C -0.307 4.307 10 C 0.132 3.868 11 N -0.471 5.471 12 C 0.149 3.851 13 C -0.017 4.017 14 C -0.116 4.116 15 C -0.223 4.223 16 C 0.007 3.993 17 O -0.186 6.186 18 S 0.179 5.821 19 N -0.729 5.729 20 C -0.216 4.216 21 H 0.081 0.919 22 C -0.070 4.070 23 N -0.967 5.967 24 Si 0.956 3.044 25 H -0.265 1.265 26 H -0.298 1.298 27 H -0.302 1.302 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.406 0.594 36 H 0.208 0.792 37 H 0.169 0.831 38 H 0.190 0.810 39 H 0.254 0.746 40 H 0.372 0.628 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.884 11.986 9.434 18.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C 0.054 3.946 4 H 0.077 0.923 5 C -0.004 4.004 6 N -0.356 5.356 7 C 0.381 3.619 8 O -0.444 6.444 9 C -0.431 4.431 10 C -0.029 4.029 11 N -0.186 5.186 12 C -0.120 4.120 13 C -0.070 4.070 14 C -0.140 4.140 15 C -0.242 4.242 16 C -0.062 4.062 17 O -0.082 6.082 18 S 0.440 5.560 19 N -0.370 5.370 20 C -0.348 4.348 21 H 0.099 0.901 22 C -0.263 4.263 23 N -0.618 5.618 24 Si 0.787 3.213 25 H -0.190 1.190 26 H -0.226 1.226 27 H -0.230 1.230 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.242 0.758 36 H 0.224 0.776 37 H 0.186 0.814 38 H 0.207 0.793 39 H 0.270 0.730 40 H 0.204 0.796 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 10.236 11.642 9.518 18.191 hybrid contribution -0.312 0.017 -0.872 0.927 sum 9.924 11.660 8.645 17.584 Atomic orbital electron populations 1.21699 0.95926 1.00637 1.01806 1.21974 0.96669 0.96995 1.01246 1.20756 0.90666 0.93644 0.89564 0.92267 1.21734 0.94658 0.81694 1.02268 1.45928 1.06366 1.11411 1.71876 1.16757 0.82545 0.86079 0.76567 1.90792 1.56460 1.45162 1.51965 1.25883 0.98621 0.98070 1.20571 1.22482 0.95072 0.90515 0.94796 1.66420 1.30130 1.04166 1.17870 1.24614 0.91270 0.94516 1.01596 1.18636 0.86712 0.86790 1.14851 1.22299 0.99094 0.92975 0.99676 1.22265 0.95430 0.98209 1.08319 1.25384 0.97052 0.83720 1.00092 1.84094 1.34664 1.18830 1.70566 1.85487 1.09790 0.97078 1.63654 1.42604 1.15881 1.66190 1.12326 1.19529 0.92441 1.25220 0.97612 0.90117 1.25355 1.00878 1.03371 0.96676 1.69812 1.36779 1.50802 1.04412 0.85315 0.80999 0.77495 0.77470 1.18956 1.22573 1.22967 0.93260 0.92790 0.93217 0.93449 0.90421 0.89280 0.92296 0.75799 0.77598 0.81360 0.79294 0.73024 0.79621 0.94443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.74 9.18 71.98 0.66 -4.08 16 2 C -0.13 -4.08 5.61 30.59 0.17 -3.91 16 3 C 0.16 5.73 2.59 44.99 0.12 5.85 16 4 H 0.06 2.07 8.08 -2.39 -0.02 2.05 16 5 C 0.12 3.95 5.23 86.38 0.45 4.40 16 6 N -0.71 -24.29 5.38 -467.29 -2.52 -26.81 16 7 C 0.59 20.75 7.78 86.38 0.67 21.42 16 8 O -0.56 -21.74 16.86 -4.44 -0.07 -21.81 16 9 C -0.31 -9.58 6.50 24.07 0.16 -9.42 16 10 C 0.13 3.70 11.04 84.58 0.93 4.64 16 11 N -0.47 -13.09 10.47 -188.72 -1.98 -15.07 16 12 C 0.15 4.12 7.44 87.09 0.65 4.77 16 13 C -0.02 -0.42 7.21 24.10 0.17 -0.24 16 14 C -0.12 -2.16 10.79 22.43 0.24 -1.92 16 15 C -0.22 -2.82 10.88 22.09 0.24 -2.58 16 16 C 0.01 0.09 12.08 67.06 0.81 0.90 16 17 O -0.19 -4.08 10.67 -6.37 -0.07 -4.15 16 18 S 0.18 5.27 22.52 -56.49 -1.27 4.00 16 19 N -0.73 -32.94 4.51 -322.93 -1.46 -34.40 16 20 C -0.22 -10.79 7.75 84.04 0.65 -10.14 16 21 H 0.08 3.87 7.32 -2.91 -0.02 3.85 16 22 C -0.07 -3.79 5.50 84.86 0.47 -3.33 16 23 N -0.97 -56.53 13.06 21.65 0.28 -56.24 16 24 Si 0.96 44.16 29.55 68.60 2.03 46.19 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 26 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 27 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 28 H 0.05 1.99 5.99 -2.39 -0.01 1.98 16 29 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 34 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.41 14.49 7.30 -92.71 -0.68 13.82 16 36 H 0.21 5.00 8.06 -2.91 -0.02 4.97 16 37 H 0.17 2.78 8.06 -2.91 -0.02 2.76 16 38 H 0.19 1.10 8.06 -2.91 -0.02 1.07 16 39 H 0.25 0.79 8.06 -2.91 -0.02 0.76 16 40 H 0.37 18.82 7.80 -92.71 -0.72 18.09 16 41 H 0.25 14.25 8.31 -92.70 -0.77 13.48 16 Total: -1.00 -66.47 369.82 1.03 -65.44 By element: Atomic # 1 Polarization: 36.80 SS G_CDS: -0.32 Total: 36.48 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 6.40 Total: 6.37 kcal Atomic # 7 Polarization: -126.86 SS G_CDS: -5.66 Total: -132.52 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.14 Total: -25.96 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: 5.27 SS G_CDS: -1.27 Total: 4.00 kcal Total: -66.47 1.03 -65.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481871752.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.074 kcal (2) G-P(sol) polarization free energy of solvation -66.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds