Wall clock time and date at job start Tue Mar 31 2020 19:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 5 5 N 1.46498 * 109.47059 * 64.99625 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47294 * 90.00155 * 10 8 6 12 12 H 1.48499 * 109.47218 * 210.00015 * 10 8 6 13 13 H 1.48496 * 109.47166 * 329.99846 * 10 8 6 14 14 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 15 15 N 1.46490 * 109.47559 * 295.00069 * 14 2 1 16 16 C 1.34773 * 120.00384 * 179.97438 * 15 14 2 17 17 O 1.21728 * 119.99674 * 0.02562 * 16 15 14 18 18 C 1.46420 * 120.00559 * 179.97438 * 16 15 14 19 19 C 1.36808 * 126.00262 * 179.71815 * 18 16 15 20 20 N 1.30366 * 115.31340 * 179.84600 * 19 18 16 21 21 C 1.30920 * 117.31516 * 0.46337 * 20 19 18 22 22 C 1.46868 * 125.28415 * 179.78188 * 21 20 19 23 23 C 1.36421 * 125.97485 * 359.95802 * 22 21 20 24 24 C 1.40614 * 106.71673 * 179.97438 * 23 22 21 25 25 C 1.34957 * 107.09058 * 0.02562 * 24 23 22 26 26 O 1.34168 * 108.74521 * 359.72826 * 25 24 23 27 27 S 1.76117 * 109.42593 * 359.74640 * 21 20 19 28 28 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 29 29 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 31 31 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 32 32 H 1.08994 * 109.46974 * 185.00040 * 4 2 1 33 33 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 34 34 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 35 35 H 1.08998 * 109.46886 * 55.00501 * 14 2 1 36 36 H 1.09002 * 109.46923 * 174.99751 * 14 2 1 37 37 H 0.97002 * 120.00315 * 0.02562 * 15 14 2 38 38 H 1.08004 * 122.34442 * 0.03565 * 19 18 16 39 39 H 1.08000 * 126.64217 * 359.97438 * 23 22 21 40 40 H 1.07999 * 126.46041 * 180.02562 * 24 23 22 41 41 H 1.08000 * 125.62807 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 2.0064 -0.4178 -3.6852 7 1 2.5675 -1.3351 -3.7860 8 6 1.6441 0.3020 -4.8155 9 7 0.9607 1.4202 -4.6925 10 14 2.1263 -0.3163 -6.5109 11 1 1.0575 -1.2029 -7.0370 12 1 2.3063 0.8390 -7.4264 13 1 3.3985 -1.0764 -6.4172 14 6 2.0400 -0.7211 1.2494 15 7 1.6525 0.0355 2.4424 16 6 1.9956 -0.4133 3.6660 17 8 2.6280 -1.4472 3.7798 18 6 1.6088 0.3432 4.8584 19 6 1.8859 0.0001 6.1535 20 7 1.4432 0.8294 7.0567 21 6 0.7837 1.8794 6.6366 22 6 0.2062 2.9192 7.4982 23 6 0.2645 2.9544 8.8608 24 6 -0.4138 4.1180 9.2646 25 6 -0.8501 4.7317 8.1446 26 8 -0.4694 4.0086 7.0806 27 16 0.6976 1.8519 4.8778 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6054 -1.7199 -1.2950 32 1 3.1263 -0.7995 -1.2055 33 1 1.1488 0.8593 -2.3518 34 1 0.7072 1.9230 -5.4823 35 1 1.6054 -1.7197 1.2953 36 1 3.1263 -0.7993 1.2057 37 1 1.1483 0.8592 2.3518 38 1 2.4357 -0.8936 6.4095 39 1 0.7397 2.2291 9.5046 40 1 -0.5585 4.4569 10.2798 41 1 -1.4090 5.6553 8.1103 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482161493.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:51 Heat of formation + Delta-G solvation = 34.714417 kcal Electronic energy + Delta-G solvation = -24423.153572 eV Core-core repulsion = 20625.124945 eV Total energy + Delta-G solvation = -3798.028628 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.12218 -40.35228 -39.29974 -36.88278 -34.47320 -33.70500 -32.69594 -32.08375 -30.23654 -29.44320 -26.84495 -26.08853 -25.20361 -23.05925 -22.42272 -22.04006 -21.40766 -20.36201 -19.78464 -19.05266 -17.68559 -17.25983 -16.76581 -16.75198 -16.21983 -15.76092 -15.43093 -14.88504 -14.72750 -14.53969 -14.15018 -14.09138 -13.65848 -13.48782 -13.42575 -13.11613 -13.07794 -12.69312 -12.37890 -12.11664 -11.97272 -11.09759 -10.94882 -10.74982 -10.66044 -10.64066 -10.56419 -10.45053 -10.23834 -10.20583 -10.01237 -9.87498 -9.69866 -9.22412 -8.89349 -8.53421 -6.94209 -5.78635 -3.07171 -0.59181 0.57252 1.04537 1.11665 1.91178 1.99063 2.37400 2.90826 2.92462 3.43072 3.48408 3.49954 3.77475 4.28211 4.40948 4.50676 4.54687 4.57467 4.78161 4.99230 5.15160 5.15645 5.29304 5.32247 5.41115 5.55995 5.60296 5.74495 5.85005 5.89881 5.90505 6.04090 6.16629 6.30288 6.37130 6.38447 6.61344 6.73268 6.82502 7.03066 7.23914 7.69162 7.89643 8.40450 9.51780 10.08640 10.43384 11.44328 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.021900 B = 0.001888 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.216536 B =14829.340187 C =15950.734194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 H 0.077 0.923 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.282 1.282 14 C 0.126 3.874 15 N -0.717 5.717 16 C 0.594 3.406 17 O -0.524 6.524 18 C -0.282 4.282 19 C 0.125 3.875 20 N -0.457 5.457 21 C 0.148 3.852 22 C 0.022 3.978 23 C -0.123 4.123 24 C -0.219 4.219 25 C -0.005 4.005 26 O -0.166 6.166 27 S 0.170 5.830 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.040 0.960 31 H 0.023 0.977 32 H 0.022 0.978 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.398 0.602 38 H 0.195 0.805 39 H 0.162 0.838 40 H 0.159 0.841 41 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.230 6.293 30.204 31.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.131 4.131 3 H 0.096 0.904 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.089 0.911 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.003 3.997 15 N -0.368 5.368 16 C 0.378 3.622 17 O -0.402 6.402 18 C -0.407 4.407 19 C -0.034 4.034 20 N -0.172 5.172 21 C -0.122 4.122 22 C -0.031 4.031 23 C -0.147 4.147 24 C -0.238 4.238 25 C -0.075 4.075 26 O -0.061 6.061 27 S 0.430 5.570 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.233 0.767 38 H 0.212 0.788 39 H 0.180 0.820 40 H 0.177 0.823 41 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -4.124 6.099 29.480 30.386 hybrid contribution 0.242 -0.246 -0.607 0.699 sum -3.882 5.853 28.873 29.715 Atomic orbital electron populations 1.21808 0.94590 1.02083 1.01530 1.21578 0.96805 1.00585 0.94127 0.90437 1.20567 0.96667 0.94226 0.85258 1.42333 1.66841 1.27774 1.00580 1.19243 1.28739 1.05407 0.83661 0.91116 1.24741 1.01036 0.97368 0.97891 1.69658 1.43648 1.16482 1.28514 0.86171 0.78048 0.77502 0.84364 1.21720 1.21784 1.20743 1.21527 1.00542 0.95309 0.82308 1.45990 1.57242 1.27755 1.05801 1.16576 0.79699 0.84296 0.81637 1.90871 1.39877 1.23321 1.86112 1.26090 1.12719 1.02284 0.99615 1.22288 0.97094 0.98781 0.85234 1.66361 1.12029 1.02337 1.36455 1.24206 1.00245 0.95183 0.92580 1.18548 1.03972 0.89286 0.91298 1.21996 1.00877 0.99095 0.92780 1.21902 1.04318 0.97211 1.00388 1.24416 1.01609 0.97928 0.83575 1.84069 1.56578 1.29538 1.35949 1.85113 1.48359 1.18302 1.05255 0.90948 0.92641 0.94069 0.95883 0.96030 0.78202 0.93525 0.90778 0.90778 0.76705 0.78784 0.82013 0.82350 0.76945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.94 37.16 0.33 -1.75 16 2 C -0.11 -1.69 2.46 -90.62 -0.22 -1.92 16 3 H 0.08 1.19 8.14 -51.92 -0.42 0.77 16 4 C 0.16 3.14 5.65 -4.04 -0.02 3.12 16 5 N -0.73 -18.13 5.33 -59.91 -0.32 -18.45 16 6 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 7 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -28.00 13.06 55.49 0.72 -27.27 16 10 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 C 0.13 1.71 5.06 -4.05 -0.02 1.69 16 15 N -0.72 -8.68 5.28 -61.70 -0.33 -9.00 16 16 C 0.59 7.80 7.78 -12.97 -0.10 7.70 16 17 O -0.52 -8.45 16.86 5.16 0.09 -8.36 16 18 C -0.28 -3.13 6.50 -36.81 -0.24 -3.37 16 19 C 0.13 1.32 11.04 -18.69 -0.21 1.12 16 20 N -0.46 -4.87 10.47 -11.00 -0.12 -4.98 16 21 C 0.15 1.48 7.44 -14.45 -0.11 1.37 16 22 C 0.02 0.20 7.21 -36.75 -0.26 -0.07 16 23 C -0.12 -0.91 10.79 -39.34 -0.42 -1.34 16 24 C -0.22 -1.15 10.88 -39.85 -0.43 -1.58 16 25 C 0.00 -0.02 12.08 29.57 0.36 0.33 16 26 O -0.17 -1.34 10.67 4.62 0.05 -1.29 16 27 S 0.17 1.58 22.52 -107.50 -2.42 -0.84 16 28 H 0.07 1.23 7.18 -51.93 -0.37 0.86 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.04 0.49 7.18 -51.93 -0.37 0.12 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.38 9.90 6.85 -40.82 -0.28 9.62 16 34 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.40 4.15 6.82 -40.82 -0.28 3.87 16 38 H 0.20 1.78 8.06 -52.48 -0.42 1.36 16 39 H 0.16 1.06 8.06 -52.49 -0.42 0.63 16 40 H 0.16 0.43 8.06 -52.49 -0.42 0.01 16 41 H 0.21 0.18 8.06 -52.49 -0.42 -0.25 16 LS Contribution 371.64 15.07 5.60 5.60 Total: -1.00 -33.55 371.64 -8.42 -41.97 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -5.08 Total: 7.28 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -1.60 Total: -2.02 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: -0.04 Total: -59.71 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.14 Total: -9.65 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.42 Total: -0.84 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.55 -8.42 -41.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482161493.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.688 kcal (2) G-P(sol) polarization free energy of solvation -33.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds