Wall clock time and date at job start Tue Mar 31 2020 19:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 5 5 N 1.46498 * 109.47059 * 64.99625 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47294 * 90.00155 * 10 8 6 12 12 H 1.48499 * 109.47218 * 210.00015 * 10 8 6 13 13 H 1.48496 * 109.47166 * 329.99846 * 10 8 6 14 14 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 15 15 N 1.46490 * 109.47559 * 295.00069 * 14 2 1 16 16 C 1.34773 * 120.00384 * 179.97438 * 15 14 2 17 17 O 1.21728 * 119.99674 * 0.02562 * 16 15 14 18 18 C 1.46420 * 120.00559 * 179.97438 * 16 15 14 19 19 C 1.36808 * 126.00262 * 179.71815 * 18 16 15 20 20 N 1.30366 * 115.31340 * 179.84600 * 19 18 16 21 21 C 1.30920 * 117.31516 * 0.46337 * 20 19 18 22 22 C 1.46868 * 125.28415 * 179.78188 * 21 20 19 23 23 C 1.36421 * 125.97485 * 359.95802 * 22 21 20 24 24 C 1.40614 * 106.71673 * 179.97438 * 23 22 21 25 25 C 1.34957 * 107.09058 * 0.02562 * 24 23 22 26 26 O 1.34168 * 108.74521 * 359.72826 * 25 24 23 27 27 S 1.76117 * 109.42593 * 359.74640 * 21 20 19 28 28 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 29 29 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 31 31 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 32 32 H 1.08994 * 109.46974 * 185.00040 * 4 2 1 33 33 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 34 34 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 35 35 H 1.08998 * 109.46886 * 55.00501 * 14 2 1 36 36 H 1.09002 * 109.46923 * 174.99751 * 14 2 1 37 37 H 0.97002 * 120.00315 * 0.02562 * 15 14 2 38 38 H 1.08004 * 122.34442 * 0.03565 * 19 18 16 39 39 H 1.08000 * 126.64217 * 359.97438 * 23 22 21 40 40 H 1.07999 * 126.46041 * 180.02562 * 24 23 22 41 41 H 1.08000 * 125.62807 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 2.0064 -0.4178 -3.6852 7 1 2.5675 -1.3351 -3.7860 8 6 1.6441 0.3020 -4.8155 9 7 0.9607 1.4202 -4.6925 10 14 2.1263 -0.3163 -6.5109 11 1 1.0575 -1.2029 -7.0370 12 1 2.3063 0.8390 -7.4264 13 1 3.3985 -1.0764 -6.4172 14 6 2.0400 -0.7211 1.2494 15 7 1.6525 0.0355 2.4424 16 6 1.9956 -0.4133 3.6660 17 8 2.6280 -1.4472 3.7798 18 6 1.6088 0.3432 4.8584 19 6 1.8859 0.0001 6.1535 20 7 1.4432 0.8294 7.0567 21 6 0.7837 1.8794 6.6366 22 6 0.2062 2.9192 7.4982 23 6 0.2645 2.9544 8.8608 24 6 -0.4138 4.1180 9.2646 25 6 -0.8501 4.7317 8.1446 26 8 -0.4694 4.0086 7.0806 27 16 0.6976 1.8519 4.8778 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6054 -1.7199 -1.2950 32 1 3.1263 -0.7995 -1.2055 33 1 1.1488 0.8593 -2.3518 34 1 0.7072 1.9230 -5.4823 35 1 1.6054 -1.7197 1.2953 36 1 3.1263 -0.7993 1.2057 37 1 1.1483 0.8592 2.3518 38 1 2.4357 -0.8936 6.4095 39 1 0.7397 2.2291 9.5046 40 1 -0.5585 4.4569 10.2798 41 1 -1.4090 5.6553 8.1103 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482161493.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:51 Heat of formation + Delta-G solvation = 11.691060 kcal Electronic energy + Delta-G solvation = -24424.151940 eV Core-core repulsion = 20625.124945 eV Total energy + Delta-G solvation = -3799.026995 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.62112 -41.27287 -40.22133 -38.25655 -36.04156 -34.28581 -34.17778 -32.86537 -31.93505 -30.27587 -27.89900 -27.34785 -26.49858 -24.54502 -23.36179 -22.54424 -22.38722 -21.57472 -20.54970 -20.02902 -19.08887 -18.34260 -17.76544 -17.32257 -17.21230 -16.79510 -16.62084 -16.09725 -15.84722 -15.54663 -15.44925 -15.21856 -15.12681 -14.73745 -14.18296 -13.99966 -13.90448 -13.67665 -13.60313 -13.53149 -12.97231 -12.80388 -12.76306 -12.22700 -12.18533 -12.02353 -11.78260 -11.68367 -11.47895 -11.28260 -11.04834 -10.94420 -10.88155 -10.55618 -10.28113 -9.14308 -8.99365 -7.95596 -5.23789 -1.34173 -0.17265 0.27413 0.49930 1.33088 1.46127 1.47935 1.49168 1.57684 1.70493 1.90093 2.00875 2.56465 3.20059 3.38245 3.58770 3.63776 3.70614 3.92461 3.96483 3.98801 4.04227 4.14765 4.33284 4.50371 4.60159 4.67010 4.72426 4.87614 4.91140 4.93946 4.97555 4.99501 5.10325 5.17800 5.34076 5.43522 5.43662 5.50209 5.89272 6.19563 6.27309 6.33810 6.89882 7.34047 8.09147 8.33185 9.27829 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.021900 B = 0.001888 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.216536 B =14829.340187 C =15950.734194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.096 4.096 3 H 0.078 0.922 4 C 0.157 3.843 5 N -0.741 5.741 6 C -0.247 4.247 7 H 0.074 0.926 8 C -0.075 4.075 9 N -0.968 5.968 10 Si 0.973 3.027 11 H -0.287 1.287 12 H -0.295 1.295 13 H -0.271 1.271 14 C 0.137 3.863 15 N -0.710 5.710 16 C 0.598 3.402 17 O -0.560 6.560 18 C -0.308 4.308 19 C 0.132 3.868 20 N -0.475 5.475 21 C 0.151 3.849 22 C -0.017 4.017 23 C -0.118 4.118 24 C -0.227 4.227 25 C 0.011 3.989 26 O -0.181 6.181 27 S 0.196 5.804 28 H 0.045 0.955 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.024 0.976 32 H 0.022 0.978 33 H 0.376 0.624 34 H 0.251 0.749 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.408 0.592 38 H 0.202 0.798 39 H 0.165 0.835 40 H 0.186 0.814 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.844 7.280 31.819 32.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.115 4.115 3 H 0.097 0.903 4 C 0.030 3.970 5 N -0.385 5.385 6 C -0.378 4.378 7 H 0.092 0.908 8 C -0.267 4.267 9 N -0.618 5.618 10 Si 0.802 3.198 11 H -0.214 1.214 12 H -0.221 1.221 13 H -0.196 1.196 14 C 0.013 3.987 15 N -0.361 5.361 16 C 0.384 3.616 17 O -0.440 6.440 18 C -0.432 4.432 19 C -0.029 4.029 20 N -0.190 5.190 21 C -0.118 4.118 22 C -0.070 4.070 23 C -0.143 4.143 24 C -0.246 4.246 25 C -0.059 4.059 26 O -0.077 6.077 27 S 0.457 5.543 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.042 0.958 32 H 0.040 0.960 33 H 0.209 0.791 34 H 0.060 0.940 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.244 0.756 38 H 0.219 0.781 39 H 0.183 0.817 40 H 0.203 0.797 41 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -4.735 7.074 31.108 32.252 hybrid contribution 0.367 -0.435 -0.898 1.063 sum -4.369 6.639 30.210 31.238 Atomic orbital electron populations 1.21746 0.93921 1.02167 1.01658 1.21358 0.97178 1.00147 0.92854 0.90341 1.20715 0.96679 0.94187 0.85393 1.42504 1.66713 1.27912 1.01346 1.19639 1.27871 1.05275 0.85064 0.90760 1.25544 1.01763 0.97869 1.01517 1.69805 1.45181 1.17741 1.29109 0.85146 0.78028 0.76791 0.79829 1.21417 1.22128 1.19590 1.21285 1.00228 0.95142 0.82009 1.45839 1.57139 1.27907 1.05192 1.16741 0.78903 0.83853 0.82129 1.90846 1.41590 1.24939 1.86655 1.25816 1.14869 1.03637 0.98889 1.22460 0.96368 0.98834 0.85189 1.66416 1.13176 1.02921 1.36522 1.24540 0.99032 0.94993 0.93189 1.18599 1.06405 0.90270 0.91735 1.22293 0.99947 0.99673 0.92377 1.22263 1.04008 0.96387 1.01926 1.25367 0.99716 0.98082 0.82702 1.84070 1.56778 1.29558 1.37263 1.84910 1.47713 1.16956 1.04719 0.93588 0.92592 0.91095 0.95771 0.96000 0.79096 0.93980 0.90808 0.91149 0.75596 0.78123 0.81726 0.79708 0.72919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 8.94 71.98 0.64 -3.25 16 2 C -0.10 -2.86 2.46 -10.79 -0.03 -2.88 16 3 H 0.08 2.34 8.14 -2.38 -0.02 2.33 16 4 C 0.16 6.12 5.65 86.38 0.49 6.61 16 5 N -0.74 -37.07 5.33 -343.46 -1.83 -38.90 16 6 C -0.25 -13.77 9.99 84.03 0.84 -12.93 16 7 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 8 C -0.07 -4.27 5.50 84.86 0.47 -3.81 16 9 N -0.97 -58.69 13.06 21.65 0.28 -58.41 16 10 Si 0.97 46.14 29.55 68.60 2.03 48.17 16 11 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 12 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 13 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 14 C 0.14 3.60 5.06 86.38 0.44 4.04 16 15 N -0.71 -16.56 5.28 -467.34 -2.47 -19.03 16 16 C 0.60 15.54 7.78 86.37 0.67 16.21 16 17 O -0.56 -18.16 16.86 -4.44 -0.07 -18.24 16 18 C -0.31 -6.73 6.50 24.07 0.16 -6.58 16 19 C 0.13 2.78 11.04 84.57 0.93 3.71 16 20 N -0.48 -10.00 10.47 -188.72 -1.98 -11.98 16 21 C 0.15 2.95 7.44 87.09 0.65 3.60 16 22 C -0.02 -0.29 7.21 24.11 0.17 -0.12 16 23 C -0.12 -1.57 10.79 22.43 0.24 -1.33 16 24 C -0.23 -1.73 10.88 22.10 0.24 -1.49 16 25 C 0.01 0.07 12.08 67.06 0.81 0.88 16 26 O -0.18 -2.57 10.67 -6.37 -0.07 -2.64 16 27 S 0.20 3.50 22.52 -56.49 -1.27 2.23 16 28 H 0.04 1.56 7.18 -2.39 -0.02 1.54 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 1.57 7.18 -2.39 -0.02 1.55 16 31 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.38 19.74 6.85 -92.71 -0.64 19.11 16 34 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 35 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.41 7.93 6.82 -92.71 -0.63 7.30 16 38 H 0.20 3.75 8.06 -2.91 -0.02 3.72 16 39 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 40 H 0.19 0.33 8.06 -2.91 -0.02 0.31 16 41 H 0.26 -0.73 8.06 -2.91 -0.02 -0.75 16 Total: -1.00 -72.55 371.64 1.16 -71.39 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: -0.18 Total: 24.74 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 6.73 Total: 2.66 kcal Atomic # 7 Polarization: -122.33 SS G_CDS: -5.99 Total: -128.32 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.14 Total: -20.87 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Atomic # 16 Polarization: 3.50 SS G_CDS: -1.27 Total: 2.23 kcal Total: -72.55 1.16 -71.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482161493.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.081 kcal (2) G-P(sol) polarization free energy of solvation -72.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds