Wall clock time and date at job start Tue Mar 31 2020 19:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47040 * 2 1 4 4 C 1.53000 * 109.47428 * 120.00728 * 2 1 3 5 5 N 1.46497 * 109.46889 * 174.99784 * 4 2 1 6 6 C 1.36941 * 119.99849 * 180.02562 * 5 4 2 7 7 H 1.08001 * 120.00072 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00121 * 180.02562 * 6 5 4 9 9 N 1.31622 * 119.99921 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00112 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47342 * 89.99294 * 10 8 6 12 12 H 1.48500 * 109.46809 * 209.99468 * 10 8 6 13 13 H 1.48498 * 109.46686 * 329.99285 * 10 8 6 14 14 N 1.46504 * 109.46591 * 240.00839 * 2 1 3 15 15 C 1.46497 * 120.00106 * 299.99305 * 14 2 1 16 16 C 1.34781 * 119.99788 * 119.99961 * 14 2 1 17 17 O 1.21487 * 119.99909 * 5.35895 * 16 14 2 18 18 C 1.48351 * 119.99374 * 185.35643 * 16 14 2 19 19 C 1.41712 * 126.80621 * 185.92596 * 18 16 14 20 20 C 1.37159 * 103.79539 * 179.89452 * 19 18 16 21 21 C 1.47025 * 126.85496 * 180.11895 * 20 19 18 22 22 C 1.36203 * 125.32923 * 179.97438 * 21 20 19 23 23 C 1.37715 * 114.44057 * 179.79199 * 22 21 20 24 24 C 1.33739 * 115.19035 * 0.50137 * 23 22 21 25 25 S 1.75821 * 109.96051 * 359.73224 * 24 23 22 26 26 O 1.34573 * 106.28169 * 0.36089 * 20 19 18 27 27 N 1.20866 * 111.69444 * 359.75973 * 26 20 19 28 28 H 1.08994 * 109.47553 * 59.99163 * 1 2 3 29 29 H 1.08999 * 109.47040 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46593 * 299.99115 * 1 2 3 31 31 H 1.08999 * 109.46946 * 294.99977 * 4 2 1 32 32 H 1.08998 * 109.47071 * 55.00261 * 4 2 1 33 33 H 0.97005 * 120.00562 * 0.02562 * 5 4 2 34 34 H 0.97003 * 120.00061 * 180.02562 * 9 8 6 35 35 H 1.09007 * 109.46891 * 95.35425 * 15 14 2 36 36 H 1.09006 * 109.47137 * 335.35848 * 15 14 2 37 37 H 1.08996 * 109.47294 * 215.35757 * 15 14 2 38 38 H 1.07999 * 128.10129 * 0.02562 * 19 18 16 39 39 H 1.08001 * 122.78072 * 359.97391 * 22 21 20 40 40 H 1.08002 * 122.40427 * 180.21131 * 23 22 21 41 41 H 1.08003 * 125.01823 * 179.72569 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 3.5001 -0.8265 1.1903 6 6 4.1839 -1.4391 2.2063 7 1 3.6470 -1.8444 3.0512 8 6 5.5674 -1.5382 2.1509 9 7 6.2219 -1.0439 1.1215 10 14 6.5002 -2.3745 3.5366 11 1 6.6327 -3.8235 3.2402 12 1 7.8505 -1.7690 3.6602 13 1 5.7588 -2.1956 4.8108 14 7 2.0182 -0.6905 -1.1963 15 6 1.6644 -2.0930 -1.4283 16 6 2.7931 -0.0353 -2.0835 17 8 3.1671 1.0956 -1.8445 18 6 3.1891 -0.6953 -3.3517 19 6 4.0868 -0.1925 -4.3261 20 6 4.1087 -1.1714 -5.2867 21 6 4.8874 -1.1658 -6.5338 22 6 4.8859 -2.1573 -7.4677 23 6 5.6966 -1.9174 -8.5547 24 6 6.3651 -0.7595 -8.5217 25 16 5.9725 0.1185 -7.0499 26 8 3.2710 -2.1353 -4.8622 27 7 2.7736 -1.8574 -3.7963 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.7517 -0.1586 2.1369 32 1 1.6055 -1.7200 1.2949 33 1 3.9825 -0.4622 0.4316 34 1 7.1886 -1.1135 1.0826 35 1 0.7913 -2.1446 -2.0790 36 1 1.4368 -2.5726 -0.4762 37 1 2.5016 -2.6054 -1.9022 38 1 4.6287 0.7416 -4.3141 39 1 4.2954 -3.0558 -7.3656 40 1 5.7897 -2.6163 -9.3728 41 1 7.0456 -0.4147 -9.2863 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482314909.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:10 Heat of formation + Delta-G solvation = 91.924590 kcal Electronic energy + Delta-G solvation = -26157.375380 eV Core-core repulsion = 22361.827572 eV Total energy + Delta-G solvation = -3795.547808 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -45.00457 -39.66946 -38.02381 -36.45546 -34.29719 -33.85497 -32.98316 -31.60485 -30.03562 -28.85988 -26.69396 -25.72590 -25.13419 -24.46941 -22.86942 -22.49066 -21.14512 -19.75992 -18.83226 -18.24859 -17.81466 -17.08989 -17.03932 -16.38442 -15.86595 -15.48990 -15.08873 -14.66839 -14.16820 -13.69450 -13.60621 -13.51458 -13.49300 -13.24919 -12.94734 -12.84343 -12.70752 -12.32520 -12.25079 -12.15883 -11.95650 -11.51492 -11.28154 -11.10540 -10.82578 -10.76630 -10.50216 -10.49145 -10.35237 -10.03253 -9.87007 -9.67419 -8.85309 -8.84835 -8.50390 -8.32092 -6.87669 -5.70382 -3.00184 0.09715 1.02820 1.30453 1.58534 1.76842 2.55291 2.91565 3.06234 3.42928 3.45596 3.50173 3.52559 3.97088 4.24504 4.61709 4.69805 4.80857 5.02298 5.10022 5.14845 5.22624 5.30484 5.41365 5.48483 5.58693 5.63810 5.65857 5.76048 5.80886 5.91773 5.97911 6.03952 6.08747 6.18158 6.19162 6.37337 6.50062 6.70612 6.93855 7.58141 7.72492 7.94564 8.35780 8.46802 9.58191 10.16597 10.51810 11.51715 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011763 B = 0.003205 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.763917 B = 8733.896171 C =10187.152998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.125 3.875 3 H 0.102 0.898 4 C 0.143 3.857 5 N -0.728 5.728 6 C -0.241 4.241 7 H 0.070 0.930 8 C -0.013 4.013 9 N -0.929 5.929 10 Si 0.906 3.094 11 H -0.291 1.291 12 H -0.291 1.291 13 H -0.282 1.282 14 N -0.580 5.580 15 C 0.085 3.915 16 C 0.597 3.403 17 O -0.519 6.519 18 C -0.003 4.003 19 C -0.161 4.161 20 C 0.032 3.968 21 C -0.135 4.135 22 C -0.104 4.104 23 C -0.136 4.136 24 C -0.213 4.213 25 S 0.178 5.822 26 O 0.128 5.872 27 N -0.321 5.321 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.031 0.969 32 H 0.022 0.978 33 H 0.386 0.614 34 H 0.254 0.746 35 H 0.052 0.948 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.182 0.818 39 H 0.150 0.850 40 H 0.146 0.854 41 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.457 -0.486 -21.070 22.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.023 3.977 3 H 0.120 0.880 4 C 0.015 3.985 5 N -0.373 5.373 6 C -0.373 4.373 7 H 0.088 0.912 8 C -0.209 4.209 9 N -0.577 5.577 10 Si 0.737 3.263 11 H -0.218 1.218 12 H -0.218 1.218 13 H -0.208 1.208 14 N -0.312 5.312 15 C -0.058 4.058 16 C 0.382 3.618 17 O -0.393 6.393 18 C -0.160 4.160 19 C -0.184 4.184 20 C -0.033 4.033 21 C -0.253 4.253 22 C -0.137 4.137 23 C -0.165 4.165 24 C -0.349 4.349 25 S 0.443 5.557 26 O 0.052 5.948 27 N -0.023 5.023 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.049 0.951 32 H 0.039 0.961 33 H 0.221 0.779 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.200 0.800 39 H 0.168 0.832 40 H 0.164 0.836 41 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -6.630 0.575 -19.603 20.702 hybrid contribution 0.899 -1.285 -0.185 1.580 sum -5.731 -0.710 -19.787 20.613 Atomic orbital electron populations 1.22061 0.94760 1.02301 1.02170 1.21506 0.93475 0.98510 0.84229 0.87957 1.21016 0.87217 0.96820 0.93466 1.42315 0.99638 1.70102 1.25260 1.19205 0.89433 1.29469 0.99143 0.91246 1.24758 0.96455 1.01626 0.98066 1.69697 1.07121 1.50636 1.30230 0.86202 0.79466 0.78976 0.81609 1.21810 1.21773 1.20781 1.47525 1.49271 1.12606 1.21806 1.21862 1.00926 0.81047 1.01993 1.16831 0.78632 0.85168 0.81126 1.90796 1.54016 1.18193 1.76323 1.23298 1.00630 0.92914 0.99176 1.22626 1.01710 1.01874 0.92205 1.21181 0.96872 0.89829 0.95380 1.21815 1.05520 1.01652 0.96353 1.20724 1.00582 0.99451 0.92896 1.20022 0.98582 0.97986 0.99959 1.25966 1.06955 0.99781 1.02235 1.84423 1.37975 1.19144 1.14125 1.84911 1.43531 1.39328 1.27053 1.74339 1.16876 1.15358 0.95708 0.92612 0.92229 0.91113 0.95137 0.96056 0.77934 0.93581 0.92915 0.90308 0.90479 0.80041 0.83219 0.83595 0.81211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.19 37.16 0.34 -1.71 16 2 C 0.13 2.24 2.79 -67.93 -0.19 2.05 16 3 H 0.10 2.02 6.91 -51.93 -0.36 1.66 16 4 C 0.14 2.97 5.52 -4.04 -0.02 2.95 16 5 N -0.73 -19.44 5.43 -59.91 -0.33 -19.76 16 6 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 7 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 8 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 9 N -0.93 -29.37 13.06 55.49 0.72 -28.65 16 10 Si 0.91 23.06 29.55 -169.99 -5.02 18.04 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 13 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 14 N -0.58 -10.60 2.24 -174.85 -0.39 -10.99 16 15 C 0.08 1.36 8.35 59.85 0.50 1.86 16 16 C 0.60 11.89 7.40 -12.10 -0.09 11.80 16 17 O -0.52 -11.69 16.29 5.38 0.09 -11.60 16 18 C 0.00 -0.04 6.78 -82.66 -0.56 -0.60 16 19 C -0.16 -2.45 10.78 -38.65 -0.42 -2.86 16 20 C 0.03 0.42 7.28 -36.41 -0.26 0.16 16 21 C -0.14 -1.47 6.45 -36.75 -0.24 -1.70 16 22 C -0.10 -0.93 10.17 -40.50 -0.41 -1.34 16 23 C -0.14 -0.97 10.15 -41.35 -0.42 -1.39 16 24 C -0.21 -1.49 11.21 29.15 0.33 -1.16 16 25 S 0.18 1.61 23.11 -107.50 -2.48 -0.88 16 26 O 0.13 1.79 11.21 15.75 0.18 1.97 16 27 N -0.32 -5.10 8.94 33.36 0.30 -4.80 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.73 7.67 -51.93 -0.40 0.33 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.02 0.43 6.86 -51.93 -0.36 0.08 16 33 H 0.39 11.23 7.07 -40.82 -0.29 10.94 16 34 H 0.25 7.77 8.31 -40.82 -0.34 7.43 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 1.24 6.54 -51.93 -0.34 0.90 16 37 H 0.08 1.34 5.97 -51.93 -0.31 1.03 16 38 H 0.18 2.54 8.06 -52.49 -0.42 2.12 16 39 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 41 H 0.17 0.74 8.06 -52.48 -0.42 0.32 16 LS Contribution 364.67 15.07 5.50 5.50 Total: -1.00 -34.70 364.67 -8.11 -42.81 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -4.98 Total: 7.94 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -1.69 Total: 0.43 kcal Atomic # 7 Polarization: -64.51 SS G_CDS: 0.30 Total: -64.20 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.26 Total: -9.63 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.04 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.48 Total: -0.88 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.70 -8.11 -42.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482314909.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.734 kcal (2) G-P(sol) polarization free energy of solvation -34.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds