Wall clock time and date at job start Tue Mar 31 2020 19:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47040 * 2 1 4 4 C 1.53000 * 109.47428 * 120.00728 * 2 1 3 5 5 N 1.46497 * 109.46889 * 174.99784 * 4 2 1 6 6 C 1.36941 * 119.99849 * 180.02562 * 5 4 2 7 7 H 1.08001 * 120.00072 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00121 * 180.02562 * 6 5 4 9 9 N 1.31622 * 119.99921 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00112 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47342 * 89.99294 * 10 8 6 12 12 H 1.48500 * 109.46809 * 209.99468 * 10 8 6 13 13 H 1.48498 * 109.46686 * 329.99285 * 10 8 6 14 14 N 1.46504 * 109.46591 * 240.00839 * 2 1 3 15 15 C 1.46497 * 120.00106 * 299.99305 * 14 2 1 16 16 C 1.34781 * 119.99788 * 119.99961 * 14 2 1 17 17 O 1.21487 * 119.99909 * 5.35895 * 16 14 2 18 18 C 1.48351 * 119.99374 * 185.35643 * 16 14 2 19 19 C 1.41712 * 126.80621 * 185.92596 * 18 16 14 20 20 C 1.37159 * 103.79539 * 179.89452 * 19 18 16 21 21 C 1.47025 * 126.85496 * 180.11895 * 20 19 18 22 22 C 1.36203 * 125.32923 * 179.97438 * 21 20 19 23 23 C 1.37715 * 114.44057 * 179.79199 * 22 21 20 24 24 C 1.33739 * 115.19035 * 0.50137 * 23 22 21 25 25 S 1.75821 * 109.96051 * 359.73224 * 24 23 22 26 26 O 1.34573 * 106.28169 * 0.36089 * 20 19 18 27 27 N 1.20866 * 111.69444 * 359.75973 * 26 20 19 28 28 H 1.08994 * 109.47553 * 59.99163 * 1 2 3 29 29 H 1.08999 * 109.47040 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46593 * 299.99115 * 1 2 3 31 31 H 1.08999 * 109.46946 * 294.99977 * 4 2 1 32 32 H 1.08998 * 109.47071 * 55.00261 * 4 2 1 33 33 H 0.97005 * 120.00562 * 0.02562 * 5 4 2 34 34 H 0.97003 * 120.00061 * 180.02562 * 9 8 6 35 35 H 1.09007 * 109.46891 * 95.35425 * 15 14 2 36 36 H 1.09006 * 109.47137 * 335.35848 * 15 14 2 37 37 H 1.08996 * 109.47294 * 215.35757 * 15 14 2 38 38 H 1.07999 * 128.10129 * 0.02562 * 19 18 16 39 39 H 1.08001 * 122.78072 * 359.97391 * 22 21 20 40 40 H 1.08002 * 122.40427 * 180.21131 * 23 22 21 41 41 H 1.08003 * 125.01823 * 179.72569 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 3.5001 -0.8265 1.1903 6 6 4.1839 -1.4391 2.2063 7 1 3.6470 -1.8444 3.0512 8 6 5.5674 -1.5382 2.1509 9 7 6.2219 -1.0439 1.1215 10 14 6.5002 -2.3745 3.5366 11 1 6.6327 -3.8235 3.2402 12 1 7.8505 -1.7690 3.6602 13 1 5.7588 -2.1956 4.8108 14 7 2.0182 -0.6905 -1.1963 15 6 1.6644 -2.0930 -1.4283 16 6 2.7931 -0.0353 -2.0835 17 8 3.1671 1.0956 -1.8445 18 6 3.1891 -0.6953 -3.3517 19 6 4.0868 -0.1925 -4.3261 20 6 4.1087 -1.1714 -5.2867 21 6 4.8874 -1.1658 -6.5338 22 6 4.8859 -2.1573 -7.4677 23 6 5.6966 -1.9174 -8.5547 24 6 6.3651 -0.7595 -8.5217 25 16 5.9725 0.1185 -7.0499 26 8 3.2710 -2.1353 -4.8622 27 7 2.7736 -1.8574 -3.7963 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.7517 -0.1586 2.1369 32 1 1.6055 -1.7200 1.2949 33 1 3.9825 -0.4622 0.4316 34 1 7.1886 -1.1135 1.0826 35 1 0.7913 -2.1446 -2.0790 36 1 1.4368 -2.5726 -0.4762 37 1 2.5016 -2.6054 -1.9022 38 1 4.6287 0.7416 -4.3141 39 1 4.2954 -3.0558 -7.3656 40 1 5.7897 -2.6163 -9.3728 41 1 7.0456 -0.4147 -9.2863 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482314909.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:10 Heat of formation + Delta-G solvation = 70.027045 kcal Electronic energy + Delta-G solvation = -26158.324929 eV Core-core repulsion = 22361.827572 eV Total energy + Delta-G solvation = -3796.497357 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -46.20132 -41.16408 -38.69214 -38.04133 -36.01206 -35.29908 -34.16254 -33.24171 -31.79135 -29.69149 -28.05945 -27.46405 -26.37026 -25.40078 -24.50658 -23.94482 -22.32287 -20.94469 -19.83836 -19.31592 -19.15160 -19.00867 -18.40653 -17.35863 -17.31722 -16.74139 -16.54923 -16.26369 -15.44835 -15.28231 -15.23429 -14.98989 -14.46696 -14.24876 -14.19461 -13.92934 -13.74970 -13.70966 -13.57156 -13.33720 -13.17283 -13.06898 -12.80386 -12.58830 -12.46845 -12.16970 -11.87690 -11.79958 -11.79706 -11.66852 -11.43741 -11.37591 -10.98801 -9.78644 -9.53710 -9.33505 -9.04251 -7.96372 -5.27322 -0.72871 0.04530 0.29286 0.82394 0.95717 1.42847 1.45817 1.54362 1.61821 1.84160 1.92064 2.00496 2.52624 2.67108 3.19454 3.36380 3.66060 3.72734 3.91306 4.02660 4.05160 4.15243 4.21640 4.24378 4.39353 4.48533 4.59673 4.60193 4.64432 4.75957 4.81050 4.86044 4.91783 5.06583 5.06975 5.24562 5.26291 5.43405 5.44308 5.50127 6.12702 6.23024 6.71825 6.91681 7.28905 8.04557 8.27814 9.26921 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011763 B = 0.003205 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.763917 B = 8733.896171 C =10187.152998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.128 3.872 3 H 0.076 0.924 4 C 0.141 3.859 5 N -0.745 5.745 6 C -0.245 4.245 7 H 0.081 0.919 8 C -0.079 4.079 9 N -0.971 5.971 10 Si 0.978 3.022 11 H -0.286 1.286 12 H -0.297 1.297 13 H -0.266 1.266 14 N -0.580 5.580 15 C 0.088 3.912 16 C 0.587 3.413 17 O -0.561 6.561 18 C -0.028 4.028 19 C -0.188 4.188 20 C 0.059 3.941 21 C -0.180 4.180 22 C -0.084 4.084 23 C -0.144 4.144 24 C -0.187 4.187 25 S 0.155 5.845 26 O 0.139 5.861 27 N -0.325 5.325 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.039 0.961 32 H 0.038 0.962 33 H 0.370 0.630 34 H 0.249 0.751 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.183 0.817 39 H 0.164 0.836 40 H 0.179 0.821 41 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.159 -2.216 -22.437 23.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.025 3.975 3 H 0.094 0.906 4 C 0.014 3.986 5 N -0.387 5.387 6 C -0.376 4.376 7 H 0.099 0.901 8 C -0.271 4.271 9 N -0.622 5.622 10 Si 0.806 3.194 11 H -0.213 1.213 12 H -0.224 1.224 13 H -0.191 1.191 14 N -0.311 5.311 15 C -0.054 4.054 16 C 0.374 3.626 17 O -0.438 6.438 18 C -0.184 4.184 19 C -0.212 4.212 20 C -0.006 4.006 21 C -0.298 4.298 22 C -0.117 4.117 23 C -0.173 4.173 24 C -0.323 4.323 25 S 0.420 5.580 26 O 0.061 5.939 27 N -0.025 5.025 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.201 0.799 34 H 0.058 0.942 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.200 0.800 39 H 0.182 0.818 40 H 0.196 0.804 41 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -7.414 -1.181 -20.928 22.234 hybrid contribution 1.129 -0.796 0.060 1.383 sum -6.285 -1.977 -20.869 21.884 Atomic orbital electron populations 1.21984 0.90593 1.03855 1.03532 1.21491 0.96480 0.96569 0.82957 0.90601 1.21245 0.84125 0.98005 0.95264 1.42558 1.02047 1.69863 1.24260 1.19675 0.89973 1.28391 0.99596 0.90115 1.25665 0.97602 1.03103 1.00738 1.69896 1.06892 1.52809 1.32608 0.85075 0.77563 0.77685 0.79028 1.21257 1.22408 1.19070 1.47686 1.48606 1.13389 1.21422 1.21936 1.01333 0.79554 1.02609 1.17231 0.78336 0.84989 0.82087 1.90749 1.55663 1.19955 1.77472 1.23130 1.02293 0.93961 0.99035 1.22675 1.02718 1.02942 0.92819 1.21443 0.95382 0.88288 0.95453 1.21861 1.07716 1.03726 0.96478 1.21112 0.99451 0.98860 0.92313 1.20354 0.98048 0.98671 1.00239 1.26437 1.05982 0.98838 1.01089 1.84569 1.38020 1.19582 1.15843 1.84863 1.43370 1.39276 1.26387 1.74290 1.17276 1.14640 0.96265 0.91798 0.90499 0.89245 0.94295 0.94423 0.79856 0.94236 0.90078 0.89881 0.92073 0.80005 0.81849 0.80403 0.78068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.19 71.98 0.66 -2.82 16 2 C 0.13 4.58 2.79 44.99 0.13 4.71 16 3 H 0.08 3.13 6.91 -2.39 -0.02 3.12 16 4 C 0.14 5.79 5.52 86.38 0.48 6.27 16 5 N -0.74 -40.53 5.43 -343.46 -1.87 -42.40 16 6 C -0.24 -14.25 9.99 84.03 0.84 -13.41 16 7 H 0.08 4.42 7.83 -2.91 -0.02 4.39 16 8 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 9 N -0.97 -63.41 13.06 21.65 0.28 -63.13 16 10 Si 0.98 47.93 29.55 68.60 2.03 49.96 16 11 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 12 H -0.30 -14.73 7.11 99.48 0.71 -14.03 16 13 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 14 N -0.58 -21.66 2.24 -825.41 -1.85 -23.51 16 15 C 0.09 2.78 8.35 127.77 1.07 3.85 16 16 C 0.59 24.72 7.40 86.94 0.64 25.36 16 17 O -0.56 -27.15 16.29 -3.68 -0.06 -27.21 16 18 C -0.03 -1.02 6.78 42.79 0.29 -0.73 16 19 C -0.19 -6.10 10.78 22.87 0.25 -5.85 16 20 C 0.06 1.60 7.28 24.32 0.18 1.78 16 21 C -0.18 -3.80 6.45 24.10 0.16 -3.64 16 22 C -0.08 -1.30 10.17 21.67 0.22 -1.08 16 23 C -0.14 -1.56 10.15 21.12 0.21 -1.35 16 24 C -0.19 -2.03 11.21 66.80 0.75 -1.28 16 25 S 0.15 2.70 23.11 -56.49 -1.31 1.39 16 26 O 0.14 3.92 11.21 66.54 0.75 4.66 16 27 N -0.32 -10.53 8.94 -48.87 -0.44 -10.97 16 28 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.08 1.64 7.67 -2.39 -0.02 1.63 16 30 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.04 1.46 6.86 -2.39 -0.02 1.44 16 33 H 0.37 22.44 7.07 -92.70 -0.65 21.78 16 34 H 0.25 15.74 8.31 -92.71 -0.77 14.97 16 35 H 0.08 2.09 8.14 -2.38 -0.02 2.08 16 36 H 0.08 2.52 6.54 -2.38 -0.02 2.51 16 37 H 0.06 2.15 5.97 -2.39 -0.01 2.14 16 38 H 0.18 5.65 8.06 -2.91 -0.02 5.63 16 39 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 40 H 0.18 0.84 8.06 -2.91 -0.02 0.81 16 41 H 0.20 0.88 8.06 -2.91 -0.02 0.86 16 Total: -1.00 -78.22 364.67 4.29 -73.93 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: 0.42 Total: 29.78 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 6.33 Total: 7.49 kcal Atomic # 7 Polarization: -136.13 SS G_CDS: -3.87 Total: -140.01 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: 0.69 Total: -22.55 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.96 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -1.31 Total: 1.39 kcal Total: -78.22 4.29 -73.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482314909.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.962 kcal (2) G-P(sol) polarization free energy of solvation -78.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds