Wall clock time and date at job start Tue Mar 31 2020 19:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46976 * 2 1 4 4 C 1.53003 * 109.46923 * 240.00668 * 2 1 3 5 5 N 1.46503 * 109.47067 * 184.99804 * 4 2 1 6 6 C 1.36928 * 119.99938 * 180.02562 * 5 4 2 7 7 H 1.08007 * 120.00515 * 359.97438 * 6 5 4 8 8 C 1.38809 * 120.00179 * 180.02562 * 6 5 4 9 9 N 1.31623 * 119.99853 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00363 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46981 * 89.99613 * 10 8 6 12 12 H 1.48502 * 109.46977 * 209.99630 * 10 8 6 13 13 H 1.48496 * 109.47064 * 329.99708 * 10 8 6 14 14 N 1.46497 * 109.47379 * 120.00300 * 2 1 3 15 15 C 1.46502 * 119.99586 * 60.00119 * 14 2 1 16 16 C 1.34770 * 120.00230 * 239.99746 * 14 2 1 17 17 O 1.21496 * 119.99924 * 3.64509 * 16 14 2 18 18 C 1.48349 * 120.00077 * 183.63390 * 16 14 2 19 19 C 1.41703 * 126.81237 * 173.41110 * 18 16 14 20 20 C 1.37152 * 103.79951 * 179.97438 * 19 18 16 21 21 C 1.47027 * 126.86024 * 180.02562 * 20 19 18 22 22 C 1.36204 * 125.33409 * 179.71382 * 21 20 19 23 23 C 1.37715 * 114.44032 * 179.79010 * 22 21 20 24 24 C 1.33742 * 115.19406 * 0.50926 * 23 22 21 25 25 S 1.75828 * 109.95994 * 359.72292 * 24 23 22 26 26 O 1.34578 * 106.28313 * 359.97438 * 20 19 18 27 27 N 1.20869 * 111.69282 * 0.02562 * 26 20 19 28 28 H 1.09000 * 109.46587 * 299.99379 * 1 2 3 29 29 H 1.09002 * 109.47252 * 59.99522 * 1 2 3 30 30 H 1.08997 * 109.46612 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47180 * 304.99628 * 4 2 1 32 32 H 1.09002 * 109.47318 * 64.99564 * 4 2 1 33 33 H 0.96994 * 119.99714 * 0.02562 * 5 4 2 34 34 H 0.96999 * 120.00029 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.47233 * 264.07378 * 15 14 2 36 36 H 1.09000 * 109.47699 * 24.08014 * 15 14 2 37 37 H 1.09002 * 109.47169 * 144.08040 * 15 14 2 38 38 H 1.07999 * 128.10055 * 359.94806 * 19 18 16 39 39 H 1.07990 * 122.78011 * 359.97438 * 22 21 20 40 40 H 1.08001 * 122.40236 * 180.21053 * 23 22 21 41 41 H 1.07993 * 125.01980 * 179.76222 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 3.5001 -0.8262 -1.1908 6 6 4.1838 -1.4376 -2.2074 7 1 3.6468 -1.8428 -3.0524 8 6 5.5672 -1.5377 -2.1517 9 7 6.2217 -1.0445 -1.1218 10 14 6.5000 -2.3724 -3.5383 11 1 6.8626 -1.3652 -4.5676 12 1 7.7352 -2.9958 -2.9990 13 1 5.6437 -3.4197 -4.1508 14 7 2.0184 -0.6906 1.1961 15 6 1.6645 -2.0933 1.4278 16 6 2.7933 -0.0358 2.0832 17 8 3.0324 1.1450 1.9257 18 6 3.3542 -0.7566 3.2522 19 6 4.2831 -0.2513 4.1956 20 6 4.4726 -1.2982 5.0611 21 6 5.3482 -1.3188 6.2420 22 6 5.5090 -2.3764 7.0851 23 6 6.3900 -2.1518 8.1194 24 6 6.9411 -0.9334 8.1434 25 16 6.3464 0.0211 6.7918 26 8 3.6963 -2.3025 4.6142 27 7 3.0879 -1.9878 3.6183 28 1 -0.3632 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.6055 -1.7196 -1.2954 32 1 1.7516 -0.1581 -2.1371 33 1 3.9824 -0.4627 -0.4318 34 1 7.1884 -1.1141 -1.0830 35 1 0.7978 -2.1453 2.0867 36 1 1.4271 -2.5700 0.4768 37 1 2.5054 -2.6082 1.8924 38 1 4.7361 0.7286 4.2257 39 1 4.9908 -3.3145 6.9518 40 1 6.6159 -2.9038 8.8610 41 1 7.6476 -0.5872 8.8832 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482314913.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:14 Heat of formation + Delta-G solvation = 93.190396 kcal Electronic energy + Delta-G solvation = -26225.126851 eV Core-core repulsion = 22429.633932 eV Total energy + Delta-G solvation = -3795.492919 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -44.96738 -39.67402 -37.99778 -36.46440 -34.28902 -33.85193 -32.97286 -31.59849 -30.04376 -28.83769 -26.69814 -25.72110 -25.11602 -24.45682 -22.85039 -22.49471 -21.13888 -19.76090 -18.82229 -18.22138 -17.78052 -17.11121 -17.05205 -16.36141 -15.86546 -15.47521 -15.05886 -14.70122 -14.15147 -13.69135 -13.61353 -13.49870 -13.46862 -13.26096 -12.92748 -12.84776 -12.71552 -12.32238 -12.25716 -12.17433 -11.94510 -11.52737 -11.20699 -11.02364 -10.84525 -10.75540 -10.49151 -10.46328 -10.34368 -10.04178 -9.87689 -9.68824 -8.86015 -8.82863 -8.47856 -8.32543 -6.89352 -5.71917 -3.01656 0.12448 1.05250 1.33077 1.60816 1.79667 2.57958 2.93296 3.06823 3.44834 3.45147 3.49571 3.51650 3.99195 4.27138 4.60787 4.72062 4.83443 5.03070 5.12851 5.16583 5.24735 5.31176 5.41578 5.49695 5.58550 5.63531 5.68390 5.77763 5.80376 5.94341 5.98333 6.06444 6.08556 6.17789 6.24098 6.37107 6.49382 6.70099 6.93257 7.57714 7.71376 7.97777 8.35528 8.45209 9.56626 10.14450 10.49557 11.50308 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011118 B = 0.003371 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.899094 B = 8303.869782 C = 9867.557603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.125 3.875 3 H 0.103 0.897 4 C 0.143 3.857 5 N -0.728 5.728 6 C -0.241 4.241 7 H 0.070 0.930 8 C -0.012 4.012 9 N -0.929 5.929 10 Si 0.906 3.094 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.282 1.282 14 N -0.578 5.578 15 C 0.077 3.923 16 C 0.599 3.401 17 O -0.524 6.524 18 C -0.001 4.001 19 C -0.161 4.161 20 C 0.033 3.967 21 C -0.134 4.134 22 C -0.104 4.104 23 C -0.135 4.135 24 C -0.213 4.213 25 S 0.177 5.823 26 O 0.126 5.874 27 N -0.321 5.321 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.022 0.978 32 H 0.032 0.968 33 H 0.385 0.615 34 H 0.254 0.746 35 H 0.051 0.949 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.182 0.818 39 H 0.150 0.850 40 H 0.146 0.854 41 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.229 -0.971 20.290 20.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.023 3.977 3 H 0.121 0.879 4 C 0.014 3.986 5 N -0.373 5.373 6 C -0.372 4.372 7 H 0.088 0.912 8 C -0.209 4.209 9 N -0.578 5.578 10 Si 0.738 3.262 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.208 1.208 14 N -0.310 5.310 15 C -0.066 4.066 16 C 0.384 3.616 17 O -0.399 6.399 18 C -0.159 4.159 19 C -0.184 4.184 20 C -0.032 4.032 21 C -0.253 4.253 22 C -0.137 4.137 23 C -0.165 4.165 24 C -0.350 4.350 25 S 0.442 5.558 26 O 0.051 5.949 27 N -0.023 5.023 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.040 0.960 32 H 0.049 0.951 33 H 0.219 0.781 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.199 0.801 39 H 0.168 0.832 40 H 0.164 0.836 41 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -5.620 0.149 18.968 19.784 hybrid contribution 1.042 -1.313 0.057 1.677 sum -4.578 -1.164 19.025 19.602 Atomic orbital electron populations 1.22054 0.94748 1.02262 1.02197 1.21513 0.93612 0.98499 0.84118 0.87934 1.21030 0.87168 0.96880 0.93480 1.42296 0.99648 1.70236 1.25116 1.19200 0.89436 1.29535 0.99058 0.91221 1.24752 0.96449 1.01637 0.98024 1.69690 1.07128 1.50802 1.30134 0.86202 0.79525 0.79003 0.81516 1.21705 1.21821 1.20800 1.47532 1.48916 1.12744 1.21845 1.22011 1.01283 0.81214 1.02111 1.16837 0.78447 0.85754 0.80567 1.90780 1.59600 1.14589 1.74892 1.23267 1.01226 0.91468 0.99906 1.22598 1.00604 1.01340 0.93841 1.21174 0.97320 0.88234 0.96431 1.21818 1.04842 1.00203 0.98393 1.20723 0.99656 0.99183 0.94103 1.20021 0.98785 0.97485 1.00228 1.25959 1.07115 0.98426 1.03461 1.84406 1.37493 1.13197 1.20669 1.84916 1.42326 1.36428 1.31210 1.74316 1.14444 1.14758 0.98734 0.92556 0.91146 0.92261 0.96006 0.95067 0.78106 0.93571 0.93065 0.90336 0.89500 0.80081 0.83216 0.83603 0.81226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.19 37.16 0.34 -1.72 16 2 C 0.13 2.24 2.79 -67.93 -0.19 2.05 16 3 H 0.10 2.03 6.90 -51.93 -0.36 1.67 16 4 C 0.14 2.96 5.52 -4.04 -0.02 2.94 16 5 N -0.73 -19.34 5.43 -59.91 -0.33 -19.67 16 6 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 7 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 8 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 9 N -0.93 -29.24 13.06 55.49 0.72 -28.52 16 10 Si 0.91 23.00 29.55 -169.99 -5.02 17.97 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 N -0.58 -10.59 2.24 -174.86 -0.39 -10.99 16 15 C 0.08 1.23 8.67 59.85 0.52 1.75 16 16 C 0.60 11.95 7.40 -12.10 -0.09 11.86 16 17 O -0.52 -11.67 16.28 5.37 0.09 -11.58 16 18 C 0.00 -0.02 6.85 -82.66 -0.57 -0.59 16 19 C -0.16 -2.49 10.78 -38.65 -0.42 -2.91 16 20 C 0.03 0.45 7.28 -36.42 -0.26 0.19 16 21 C -0.13 -1.51 6.45 -36.75 -0.24 -1.74 16 22 C -0.10 -0.97 10.17 -40.50 -0.41 -1.38 16 23 C -0.14 -1.01 10.15 -41.35 -0.42 -1.43 16 24 C -0.21 -1.55 11.21 29.16 0.33 -1.22 16 25 S 0.18 1.65 23.11 -107.50 -2.48 -0.84 16 26 O 0.13 1.84 11.21 15.73 0.18 2.01 16 27 N -0.32 -5.23 8.68 33.36 0.29 -4.94 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.73 7.67 -51.93 -0.40 0.33 16 31 H 0.02 0.44 6.87 -51.93 -0.36 0.09 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.38 11.12 7.06 -40.82 -0.29 10.83 16 34 H 0.25 7.74 8.31 -40.82 -0.34 7.40 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 1.24 6.54 -51.93 -0.34 0.90 16 37 H 0.09 1.52 5.37 -51.93 -0.28 1.24 16 38 H 0.18 2.57 8.06 -52.49 -0.42 2.15 16 39 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 364.20 15.07 5.49 5.49 Total: -1.00 -34.49 364.20 -8.09 -42.58 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -4.95 Total: 8.26 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -1.68 Total: 0.22 kcal Atomic # 7 Polarization: -64.41 SS G_CDS: 0.30 Total: -64.11 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.26 Total: -9.57 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.97 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -2.48 Total: -0.84 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.49 -8.09 -42.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482314913.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.767 kcal (2) G-P(sol) polarization free energy of solvation -34.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds