Wall clock time and date at job start Tue Mar 31 2020 19:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46976 * 2 1 4 4 C 1.53003 * 109.46923 * 240.00668 * 2 1 3 5 5 N 1.46503 * 109.47067 * 184.99804 * 4 2 1 6 6 C 1.36928 * 119.99938 * 180.02562 * 5 4 2 7 7 H 1.08007 * 120.00515 * 359.97438 * 6 5 4 8 8 C 1.38809 * 120.00179 * 180.02562 * 6 5 4 9 9 N 1.31623 * 119.99853 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00363 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46981 * 89.99613 * 10 8 6 12 12 H 1.48502 * 109.46977 * 209.99630 * 10 8 6 13 13 H 1.48496 * 109.47064 * 329.99708 * 10 8 6 14 14 N 1.46497 * 109.47379 * 120.00300 * 2 1 3 15 15 C 1.46502 * 119.99586 * 60.00119 * 14 2 1 16 16 C 1.34770 * 120.00230 * 239.99746 * 14 2 1 17 17 O 1.21496 * 119.99924 * 3.64509 * 16 14 2 18 18 C 1.48349 * 120.00077 * 183.63390 * 16 14 2 19 19 C 1.41703 * 126.81237 * 173.41110 * 18 16 14 20 20 C 1.37152 * 103.79951 * 179.97438 * 19 18 16 21 21 C 1.47027 * 126.86024 * 180.02562 * 20 19 18 22 22 C 1.36204 * 125.33409 * 179.71382 * 21 20 19 23 23 C 1.37715 * 114.44032 * 179.79010 * 22 21 20 24 24 C 1.33742 * 115.19406 * 0.50926 * 23 22 21 25 25 S 1.75828 * 109.95994 * 359.72292 * 24 23 22 26 26 O 1.34578 * 106.28313 * 359.97438 * 20 19 18 27 27 N 1.20869 * 111.69282 * 0.02562 * 26 20 19 28 28 H 1.09000 * 109.46587 * 299.99379 * 1 2 3 29 29 H 1.09002 * 109.47252 * 59.99522 * 1 2 3 30 30 H 1.08997 * 109.46612 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47180 * 304.99628 * 4 2 1 32 32 H 1.09002 * 109.47318 * 64.99564 * 4 2 1 33 33 H 0.96994 * 119.99714 * 0.02562 * 5 4 2 34 34 H 0.96999 * 120.00029 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.47233 * 264.07378 * 15 14 2 36 36 H 1.09000 * 109.47699 * 24.08014 * 15 14 2 37 37 H 1.09002 * 109.47169 * 144.08040 * 15 14 2 38 38 H 1.07999 * 128.10055 * 359.94806 * 19 18 16 39 39 H 1.07990 * 122.78011 * 359.97438 * 22 21 20 40 40 H 1.08001 * 122.40236 * 180.21053 * 23 22 21 41 41 H 1.07993 * 125.01980 * 179.76222 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 3.5001 -0.8262 -1.1908 6 6 4.1838 -1.4376 -2.2074 7 1 3.6468 -1.8428 -3.0524 8 6 5.5672 -1.5377 -2.1517 9 7 6.2217 -1.0445 -1.1218 10 14 6.5000 -2.3724 -3.5383 11 1 6.8626 -1.3652 -4.5676 12 1 7.7352 -2.9958 -2.9990 13 1 5.6437 -3.4197 -4.1508 14 7 2.0184 -0.6906 1.1961 15 6 1.6645 -2.0933 1.4278 16 6 2.7933 -0.0358 2.0832 17 8 3.0324 1.1450 1.9257 18 6 3.3542 -0.7566 3.2522 19 6 4.2831 -0.2513 4.1956 20 6 4.4726 -1.2982 5.0611 21 6 5.3482 -1.3188 6.2420 22 6 5.5090 -2.3764 7.0851 23 6 6.3900 -2.1518 8.1194 24 6 6.9411 -0.9334 8.1434 25 16 6.3464 0.0211 6.7918 26 8 3.6963 -2.3025 4.6142 27 7 3.0879 -1.9878 3.6183 28 1 -0.3632 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.6055 -1.7196 -1.2954 32 1 1.7516 -0.1581 -2.1371 33 1 3.9824 -0.4627 -0.4318 34 1 7.1884 -1.1141 -1.0830 35 1 0.7978 -2.1453 2.0867 36 1 1.4271 -2.5700 0.4768 37 1 2.5054 -2.6082 1.8924 38 1 4.7361 0.7286 4.2257 39 1 4.9908 -3.3145 6.9518 40 1 6.6159 -2.9038 8.8610 41 1 7.6476 -0.5872 8.8832 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482314913.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:13 Heat of formation + Delta-G solvation = 71.575248 kcal Electronic energy + Delta-G solvation = -26226.064154 eV Core-core repulsion = 22429.633932 eV Total energy + Delta-G solvation = -3796.430222 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -46.18960 -41.16775 -38.69174 -38.04907 -36.01124 -35.30361 -34.17207 -33.23664 -31.79204 -29.69598 -28.05928 -27.46299 -26.36587 -25.40500 -24.51359 -23.94131 -22.33152 -20.96604 -19.83326 -19.30099 -19.15754 -19.00348 -18.44014 -17.36355 -17.32052 -16.71919 -16.55332 -16.26832 -15.49078 -15.26781 -15.24182 -14.98518 -14.47289 -14.24612 -14.19349 -13.92454 -13.79527 -13.73883 -13.57420 -13.33202 -13.13497 -13.07683 -12.82102 -12.57220 -12.37058 -12.18427 -11.87024 -11.80211 -11.79273 -11.66714 -11.43494 -11.37888 -10.99149 -9.78952 -9.53532 -9.33403 -9.04902 -7.96887 -5.27717 -0.72724 0.05078 0.29274 0.82807 0.95599 1.42927 1.45855 1.54090 1.60022 1.84255 1.92749 2.01870 2.52435 2.67757 3.19856 3.36240 3.66001 3.72366 3.90432 4.02678 4.04620 4.17271 4.21489 4.24077 4.38673 4.48278 4.59011 4.60338 4.64427 4.77104 4.81437 4.88322 4.93234 5.06545 5.07601 5.24448 5.26252 5.43307 5.44160 5.49866 6.12136 6.22462 6.71784 6.91802 7.28409 8.03218 8.26774 9.26437 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011118 B = 0.003371 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.899094 B = 8303.869782 C = 9867.557603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.128 3.872 3 H 0.076 0.924 4 C 0.141 3.859 5 N -0.744 5.744 6 C -0.244 4.244 7 H 0.081 0.919 8 C -0.078 4.078 9 N -0.971 5.971 10 Si 0.977 3.023 11 H -0.287 1.287 12 H -0.297 1.297 13 H -0.265 1.265 14 N -0.578 5.578 15 C 0.079 3.921 16 C 0.588 3.412 17 O -0.562 6.562 18 C -0.027 4.027 19 C -0.188 4.188 20 C 0.059 3.941 21 C -0.180 4.180 22 C -0.085 4.085 23 C -0.144 4.144 24 C -0.187 4.187 25 S 0.156 5.844 26 O 0.135 5.865 27 N -0.325 5.325 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.038 0.962 32 H 0.040 0.960 33 H 0.369 0.631 34 H 0.249 0.751 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.183 0.817 39 H 0.163 0.837 40 H 0.179 0.821 41 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.630 -2.717 21.476 22.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.025 3.975 3 H 0.094 0.906 4 C 0.014 3.986 5 N -0.387 5.387 6 C -0.376 4.376 7 H 0.099 0.901 8 C -0.270 4.270 9 N -0.622 5.622 10 Si 0.806 3.194 11 H -0.214 1.214 12 H -0.224 1.224 13 H -0.190 1.190 14 N -0.309 5.309 15 C -0.063 4.063 16 C 0.375 3.625 17 O -0.440 6.440 18 C -0.183 4.183 19 C -0.211 4.211 20 C -0.006 4.006 21 C -0.298 4.298 22 C -0.118 4.118 23 C -0.173 4.173 24 C -0.323 4.323 25 S 0.421 5.579 26 O 0.059 5.941 27 N -0.026 5.026 28 H 0.082 0.918 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.200 0.800 34 H 0.058 0.942 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.201 0.799 39 H 0.181 0.819 40 H 0.196 0.804 41 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -6.101 -1.623 20.113 21.081 hybrid contribution 1.199 -0.819 -0.148 1.459 sum -4.903 -2.442 19.965 20.703 Atomic orbital electron populations 1.21978 0.90649 1.03817 1.03515 1.21494 0.96582 0.96557 0.82877 0.90580 1.21252 0.84105 0.98037 0.95237 1.42534 1.02023 1.69999 1.24114 1.19663 0.89969 1.28477 0.99499 0.90119 1.25645 0.97580 1.03102 1.00651 1.69884 1.06893 1.52924 1.32484 0.85089 0.77847 0.78150 0.78350 1.21417 1.22377 1.18965 1.47688 1.48272 1.13540 1.21416 1.22095 1.01732 0.79728 1.02773 1.17214 0.78329 0.85645 0.81353 1.90733 1.61047 1.16160 1.76075 1.23159 1.02664 0.92329 1.00160 1.22665 1.01566 1.02318 0.94563 1.21459 0.96024 0.86873 0.96227 1.21875 1.06855 1.02101 0.98969 1.21108 0.98591 0.98805 0.93308 1.20350 0.98260 0.98348 1.00363 1.26438 1.06051 0.97636 1.02209 1.84538 1.37657 1.13607 1.22085 1.84866 1.42149 1.36491 1.30621 1.74276 1.15025 1.14028 0.99301 0.91838 0.89269 0.90511 0.94413 0.94192 0.80003 0.94229 0.90184 0.89903 0.91021 0.79924 0.81938 0.80406 0.78018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.19 71.98 0.66 -2.84 16 2 C 0.13 4.57 2.79 44.99 0.13 4.70 16 3 H 0.08 3.14 6.90 -2.39 -0.02 3.13 16 4 C 0.14 5.77 5.52 86.38 0.48 6.24 16 5 N -0.74 -40.23 5.43 -343.45 -1.87 -42.10 16 6 C -0.24 -14.15 9.99 84.03 0.84 -13.31 16 7 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16 8 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 9 N -0.97 -62.97 13.06 21.65 0.28 -62.68 16 10 Si 0.98 47.71 29.55 68.60 2.03 49.74 16 11 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 12 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 13 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 14 N -0.58 -21.61 2.24 -825.42 -1.85 -23.46 16 15 C 0.08 2.50 8.67 127.77 1.11 3.60 16 16 C 0.59 24.78 7.40 86.94 0.64 25.42 16 17 O -0.56 -26.82 16.28 -3.70 -0.06 -26.88 16 18 C -0.03 -1.01 6.85 42.79 0.29 -0.71 16 19 C -0.19 -6.22 10.78 22.87 0.25 -5.97 16 20 C 0.06 1.65 7.28 24.32 0.18 1.83 16 21 C -0.18 -3.95 6.45 24.10 0.16 -3.80 16 22 C -0.08 -1.39 10.17 21.67 0.22 -1.17 16 23 C -0.14 -1.66 10.15 21.12 0.21 -1.45 16 24 C -0.19 -2.13 11.21 66.80 0.75 -1.38 16 25 S 0.16 2.80 23.11 -56.49 -1.31 1.49 16 26 O 0.14 3.98 11.21 66.49 0.75 4.73 16 27 N -0.33 -10.92 8.68 -48.87 -0.42 -11.35 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.08 1.65 7.67 -2.39 -0.02 1.63 16 31 H 0.04 1.46 6.87 -2.39 -0.02 1.44 16 32 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.37 22.18 7.06 -92.71 -0.65 21.52 16 34 H 0.25 15.65 8.31 -92.71 -0.77 14.88 16 35 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.08 2.51 6.54 -2.39 -0.02 2.50 16 37 H 0.07 2.53 5.37 -2.39 -0.01 2.52 16 38 H 0.18 5.75 8.06 -2.91 -0.02 5.73 16 39 H 0.16 2.17 8.06 -2.92 -0.02 2.14 16 40 H 0.18 0.95 8.06 -2.91 -0.02 0.93 16 41 H 0.20 0.97 8.06 -2.91 -0.02 0.94 16 Total: -1.00 -77.51 364.20 4.35 -73.16 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: 0.42 Total: 30.37 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 6.38 Total: 6.98 kcal Atomic # 7 Polarization: -135.73 SS G_CDS: -3.86 Total: -139.59 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: 0.68 Total: -22.16 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.74 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -1.31 Total: 1.49 kcal Total: -77.51 4.35 -73.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482314913.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.740 kcal (2) G-P(sol) polarization free energy of solvation -77.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds