Wall clock time and date at job start Tue Mar 31 2020 19:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99792 * 2 1 3 5 5 C 1.53003 * 109.47015 * 184.99741 * 4 2 1 6 6 N 1.46500 * 109.47377 * 180.02562 * 5 4 2 7 7 C 1.36937 * 120.00028 * 180.02562 * 6 5 4 8 8 H 1.08007 * 119.99963 * 359.97438 * 7 6 5 9 9 C 1.38806 * 120.00161 * 180.02562 * 7 6 5 10 10 N 1.31628 * 119.99875 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00327 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47265 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47578 * 119.99488 * 11 9 7 14 14 H 1.48499 * 109.47415 * 239.99819 * 11 9 7 15 15 N 1.46496 * 109.46995 * 239.99855 * 2 1 3 16 16 C 1.34779 * 119.99965 * 85.00573 * 15 2 1 17 17 O 1.21728 * 120.00185 * 359.97438 * 16 15 2 18 18 C 1.46421 * 119.99751 * 179.97438 * 16 15 2 19 19 C 1.36812 * 125.99818 * 179.71196 * 18 16 15 20 20 N 1.30360 * 115.31280 * 179.84381 * 19 18 16 21 21 C 1.30927 * 117.31849 * 0.45877 * 20 19 18 22 22 C 1.46865 * 125.28616 * 179.77038 * 21 20 19 23 23 C 1.36420 * 125.97230 * 359.97438 * 22 21 20 24 24 C 1.40618 * 106.71110 * 180.02562 * 23 22 21 25 25 C 1.34946 * 107.09399 * 0.02562 * 24 23 22 26 26 O 1.34171 * 108.74683 * 359.73047 * 25 24 23 27 27 S 1.76118 * 109.42039 * 359.74777 * 21 20 19 28 28 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 31 31 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 32 32 H 1.08998 * 109.47565 * 65.00449 * 4 2 1 33 33 H 1.08999 * 109.47145 * 300.00897 * 5 4 2 34 34 H 1.09000 * 109.46883 * 59.99966 * 5 4 2 35 35 H 0.96997 * 119.99983 * 0.02562 * 6 5 4 36 36 H 0.97001 * 119.99750 * 180.02562 * 10 9 7 37 37 H 0.97003 * 119.99991 * 264.99646 * 15 2 1 38 38 H 1.08006 * 122.34465 * 0.02562 * 19 18 16 39 39 H 1.07998 * 126.64760 * 359.97438 * 23 22 21 40 40 H 1.08003 * 126.45200 * 180.02562 * 24 23 22 41 41 H 1.08000 * 125.62803 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6134 1.3138 6 7 4.0531 -1.3044 2.5097 7 6 5.3952 -1.3405 2.7796 8 1 6.0937 -0.8598 2.1106 9 6 5.8580 -1.9957 3.9124 10 7 5.0067 -2.5820 4.7274 11 14 7.6886 -2.0456 4.2802 12 1 8.4272 -1.3177 3.2172 13 1 7.9476 -1.4015 5.5931 14 1 8.1468 -3.4574 4.3226 15 7 2.0184 -0.6906 -1.1961 16 6 2.1472 -0.0183 -2.3571 17 8 1.8573 1.1627 -2.4119 18 6 2.6357 -0.7084 -3.5524 19 6 2.8078 -0.1501 -4.7895 20 7 3.2593 -0.9578 -5.7077 21 6 3.4874 -2.1985 -5.3572 22 6 3.9901 -3.2528 -6.2475 23 6 4.2957 -3.1074 -7.5690 24 6 4.7364 -4.3634 -8.0227 25 6 4.6798 -5.2072 -6.9711 26 8 4.2344 -4.5325 -5.9003 27 16 3.0983 -2.4063 -3.6522 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6053 -0.2617 2.1370 32 1 1.7516 -1.7715 1.2057 33 1 3.9994 -1.0728 0.4260 34 1 3.8532 0.4369 1.3574 35 1 3.4259 -1.7365 3.1103 36 1 5.3301 -3.0396 5.5192 37 1 2.2491 -1.6318 -1.1525 38 1 2.5878 0.8881 -4.9906 39 1 4.2142 -2.2032 -8.1538 40 1 5.0593 -4.6068 -9.0241 41 1 4.9529 -6.2519 -6.9874 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482887719.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:55 Heat of formation + Delta-G solvation = 34.595027 kcal Electronic energy + Delta-G solvation = -24880.666011 eV Core-core repulsion = 21082.632206 eV Total energy + Delta-G solvation = -3798.033805 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.02719 -40.29901 -39.29052 -36.57639 -34.40742 -33.61148 -32.45010 -31.77397 -30.77851 -29.15933 -27.91063 -26.12165 -24.13180 -23.09762 -22.13661 -21.91094 -21.36842 -20.65940 -19.77071 -19.16245 -17.59910 -17.20281 -16.68750 -16.66271 -16.34338 -15.54054 -15.28263 -14.75180 -14.64298 -14.29661 -14.15940 -13.86494 -13.49560 -13.39810 -13.36803 -13.32837 -13.01309 -12.87770 -12.47814 -11.96525 -11.83166 -11.25058 -11.06362 -10.83790 -10.70514 -10.60132 -10.56100 -10.42919 -10.13390 -10.06040 -10.03250 -9.75896 -9.72925 -9.16423 -8.89339 -8.43380 -6.94911 -5.78920 -3.07798 -0.48197 0.69306 1.16848 1.21543 2.00462 2.09213 2.47333 2.98074 3.03737 3.42021 3.48013 3.50150 3.87331 4.38351 4.49883 4.53669 4.59803 4.63668 4.86587 4.95506 5.17814 5.24649 5.29473 5.38064 5.49948 5.52759 5.67273 5.68965 5.70704 5.87731 5.94105 5.96564 6.18348 6.23085 6.29039 6.40000 6.48117 6.76941 6.81422 7.13741 7.34913 7.68947 8.00062 8.40088 9.51347 10.08357 10.43215 11.44044 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.009659 B = 0.002799 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2898.046185 B =10000.045922 C =12159.339497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 H 0.093 0.907 4 C -0.136 4.136 5 C 0.153 3.847 6 N -0.734 5.734 7 C -0.239 4.239 8 H 0.070 0.930 9 C -0.015 4.015 10 N -0.934 5.934 11 Si 0.907 3.093 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 N -0.711 5.711 16 C 0.597 3.403 17 O -0.526 6.526 18 C -0.283 4.283 19 C 0.124 3.876 20 N -0.458 5.458 21 C 0.144 3.856 22 C 0.024 3.976 23 C -0.125 4.125 24 C -0.219 4.219 25 C -0.005 4.005 26 O -0.166 6.166 27 S 0.178 5.822 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.017 0.983 34 H 0.019 0.981 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.399 0.601 38 H 0.195 0.805 39 H 0.162 0.838 40 H 0.158 0.842 41 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.208 -3.520 -25.204 26.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.111 0.889 4 C -0.174 4.174 5 C 0.025 3.975 6 N -0.378 5.378 7 C -0.370 4.370 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.738 3.262 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 N -0.362 5.362 16 C 0.382 3.618 17 O -0.404 6.404 18 C -0.408 4.408 19 C -0.036 4.036 20 N -0.173 5.173 21 C -0.125 4.125 22 C -0.029 4.029 23 C -0.149 4.149 24 C -0.239 4.239 25 C -0.076 4.076 26 O -0.061 6.061 27 S 0.438 5.562 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.035 0.965 34 H 0.037 0.963 35 H 0.217 0.783 36 H 0.064 0.936 37 H 0.234 0.766 38 H 0.211 0.789 39 H 0.180 0.820 40 H 0.176 0.824 41 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -7.169 -3.467 -24.645 25.900 hybrid contribution 0.888 0.093 0.171 0.909 sum -6.281 -3.374 -24.474 25.492 Atomic orbital electron populations 1.22173 0.95079 1.02185 1.02557 1.21080 0.93810 0.97808 0.83182 0.88866 1.22087 0.98163 1.00864 0.96318 1.20641 0.90287 0.95747 0.90778 1.42364 1.05428 1.64897 1.25089 1.19274 0.83807 1.28383 1.05525 0.91194 1.24745 0.97759 1.00871 0.97664 1.69673 1.32710 1.40727 1.15150 0.86117 0.85039 0.77240 0.77822 1.20537 1.21805 1.21827 1.46061 1.66655 1.13962 1.09545 1.16568 0.77661 0.86060 0.81523 1.90849 1.50573 1.14524 1.84478 1.26102 1.16250 0.97715 1.00691 1.22261 0.94937 1.00922 0.85433 1.66353 1.15688 1.00436 1.34781 1.24209 1.02435 0.92478 0.93417 1.18555 1.09314 0.82378 0.92657 1.21982 1.00384 0.99663 0.92897 1.21890 1.07717 0.93135 1.01129 1.24404 1.00735 0.98562 0.83881 1.84076 1.65219 1.19482 1.37292 1.85205 1.56997 1.06321 1.07697 0.92254 0.92427 0.91200 0.89869 0.91282 0.96542 0.96269 0.78289 0.93552 0.76606 0.78872 0.82047 0.82394 0.76984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.48 37.16 0.35 -1.49 16 2 C 0.15 1.95 2.57 -67.93 -0.17 1.77 16 3 H 0.09 1.38 7.58 -51.93 -0.39 0.99 16 4 C -0.14 -2.07 4.87 -26.73 -0.13 -2.20 16 5 C 0.15 3.06 6.15 -4.04 -0.02 3.03 16 6 N -0.73 -18.58 5.60 -59.91 -0.34 -18.92 16 7 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 8 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 9 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 10 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16 11 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 14 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 15 N -0.71 -9.29 4.53 -55.19 -0.25 -9.54 16 16 C 0.60 8.37 7.74 -12.97 -0.10 8.27 16 17 O -0.53 -8.69 16.52 5.16 0.09 -8.61 16 18 C -0.28 -3.49 6.50 -36.81 -0.24 -3.73 16 19 C 0.12 1.45 11.04 -18.69 -0.21 1.24 16 20 N -0.46 -5.41 10.47 -11.00 -0.12 -5.53 16 21 C 0.14 1.64 7.44 -14.45 -0.11 1.53 16 22 C 0.02 0.25 7.21 -36.75 -0.26 -0.02 16 23 C -0.12 -1.07 10.79 -39.34 -0.42 -1.49 16 24 C -0.22 -1.39 10.88 -39.85 -0.43 -1.83 16 25 C -0.01 -0.03 12.08 29.56 0.36 0.32 16 26 O -0.17 -1.56 10.67 4.63 0.05 -1.51 16 27 S 0.18 1.94 22.52 -107.50 -2.42 -0.48 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.02 0.33 7.75 -51.93 -0.40 -0.07 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.38 10.10 7.67 -40.82 -0.31 9.78 16 36 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.40 4.79 7.77 -40.82 -0.32 4.47 16 38 H 0.19 1.96 8.06 -52.48 -0.42 1.54 16 39 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.16 0.59 8.06 -52.48 -0.42 0.17 16 41 H 0.21 0.43 8.06 -52.49 -0.42 0.01 16 LS Contribution 374.48 15.07 5.64 5.64 Total: -1.00 -34.03 374.48 -8.49 -42.51 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -5.20 Total: 8.42 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -1.64 Total: -1.99 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: 0.02 Total: -61.51 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.13 Total: -10.12 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -2.42 Total: -0.48 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.03 -8.49 -42.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482887719.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.108 kcal (2) G-P(sol) polarization free energy of solvation -34.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds