Wall clock time and date at job start Tue Mar 31 2020 19:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99792 * 2 1 3 5 5 C 1.53003 * 109.47015 * 184.99741 * 4 2 1 6 6 N 1.46500 * 109.47377 * 180.02562 * 5 4 2 7 7 C 1.36937 * 120.00028 * 180.02562 * 6 5 4 8 8 H 1.08007 * 119.99963 * 359.97438 * 7 6 5 9 9 C 1.38806 * 120.00161 * 180.02562 * 7 6 5 10 10 N 1.31628 * 119.99875 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00327 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47265 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47578 * 119.99488 * 11 9 7 14 14 H 1.48499 * 109.47415 * 239.99819 * 11 9 7 15 15 N 1.46496 * 109.46995 * 239.99855 * 2 1 3 16 16 C 1.34779 * 119.99965 * 85.00573 * 15 2 1 17 17 O 1.21728 * 120.00185 * 359.97438 * 16 15 2 18 18 C 1.46421 * 119.99751 * 179.97438 * 16 15 2 19 19 C 1.36812 * 125.99818 * 179.71196 * 18 16 15 20 20 N 1.30360 * 115.31280 * 179.84381 * 19 18 16 21 21 C 1.30927 * 117.31849 * 0.45877 * 20 19 18 22 22 C 1.46865 * 125.28616 * 179.77038 * 21 20 19 23 23 C 1.36420 * 125.97230 * 359.97438 * 22 21 20 24 24 C 1.40618 * 106.71110 * 180.02562 * 23 22 21 25 25 C 1.34946 * 107.09399 * 0.02562 * 24 23 22 26 26 O 1.34171 * 108.74683 * 359.73047 * 25 24 23 27 27 S 1.76118 * 109.42039 * 359.74777 * 21 20 19 28 28 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 31 31 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 32 32 H 1.08998 * 109.47565 * 65.00449 * 4 2 1 33 33 H 1.08999 * 109.47145 * 300.00897 * 5 4 2 34 34 H 1.09000 * 109.46883 * 59.99966 * 5 4 2 35 35 H 0.96997 * 119.99983 * 0.02562 * 6 5 4 36 36 H 0.97001 * 119.99750 * 180.02562 * 10 9 7 37 37 H 0.97003 * 119.99991 * 264.99646 * 15 2 1 38 38 H 1.08006 * 122.34465 * 0.02562 * 19 18 16 39 39 H 1.07998 * 126.64760 * 359.97438 * 23 22 21 40 40 H 1.08003 * 126.45200 * 180.02562 * 24 23 22 41 41 H 1.08000 * 125.62803 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6134 1.3138 6 7 4.0531 -1.3044 2.5097 7 6 5.3952 -1.3405 2.7796 8 1 6.0937 -0.8598 2.1106 9 6 5.8580 -1.9957 3.9124 10 7 5.0067 -2.5820 4.7274 11 14 7.6886 -2.0456 4.2802 12 1 8.4272 -1.3177 3.2172 13 1 7.9476 -1.4015 5.5931 14 1 8.1468 -3.4574 4.3226 15 7 2.0184 -0.6906 -1.1961 16 6 2.1472 -0.0183 -2.3571 17 8 1.8573 1.1627 -2.4119 18 6 2.6357 -0.7084 -3.5524 19 6 2.8078 -0.1501 -4.7895 20 7 3.2593 -0.9578 -5.7077 21 6 3.4874 -2.1985 -5.3572 22 6 3.9901 -3.2528 -6.2475 23 6 4.2957 -3.1074 -7.5690 24 6 4.7364 -4.3634 -8.0227 25 6 4.6798 -5.2072 -6.9711 26 8 4.2344 -4.5325 -5.9003 27 16 3.0983 -2.4063 -3.6522 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6053 -0.2617 2.1370 32 1 1.7516 -1.7715 1.2057 33 1 3.9994 -1.0728 0.4260 34 1 3.8532 0.4369 1.3574 35 1 3.4259 -1.7365 3.1103 36 1 5.3301 -3.0396 5.5192 37 1 2.2491 -1.6318 -1.1525 38 1 2.5878 0.8881 -4.9906 39 1 4.2142 -2.2032 -8.1538 40 1 5.0593 -4.6068 -9.0241 41 1 4.9529 -6.2519 -6.9874 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482887719.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:54 Heat of formation + Delta-G solvation = 11.368736 kcal Electronic energy + Delta-G solvation = -24881.673179 eV Core-core repulsion = 21082.632206 eV Total energy + Delta-G solvation = -3799.040972 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.63150 -41.31232 -40.27151 -37.90648 -36.15936 -34.24051 -33.77924 -32.97972 -32.10209 -30.03759 -29.41242 -26.92757 -25.91417 -24.16573 -23.21443 -22.68536 -22.54771 -21.80653 -20.59266 -20.09729 -19.17879 -18.34251 -17.73971 -17.34927 -17.30934 -16.75541 -16.39659 -16.21569 -15.57152 -15.53198 -15.34847 -15.23896 -15.06559 -14.87936 -14.31563 -14.00717 -13.91061 -13.66630 -13.53966 -13.14197 -12.95630 -12.92812 -12.73447 -12.41723 -12.26261 -12.02505 -11.98329 -11.67742 -11.46817 -11.28236 -11.04074 -10.97784 -10.87883 -10.56450 -10.25826 -9.15049 -9.03565 -7.98514 -5.27646 -1.33827 -0.16902 0.28572 0.49701 1.33025 1.45855 1.46069 1.46365 1.56614 1.70335 1.94574 2.02918 2.53263 3.19472 3.35204 3.52213 3.61976 3.72661 3.95744 3.99133 4.01974 4.11910 4.13656 4.35623 4.53008 4.58939 4.59653 4.73298 4.80197 4.87243 4.92899 4.95509 4.96586 5.13944 5.23878 5.29754 5.42552 5.43172 5.46241 5.88782 6.21580 6.24683 6.34258 6.93055 7.30955 8.05152 8.29874 9.24946 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.009659 B = 0.002799 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2898.046185 B =10000.045922 C =12159.339497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.151 3.849 3 H 0.078 0.922 4 C -0.120 4.120 5 C 0.152 3.848 6 N -0.745 5.745 7 C -0.248 4.248 8 H 0.070 0.930 9 C -0.072 4.072 10 N -0.967 5.967 11 Si 0.972 3.028 12 H -0.269 1.269 13 H -0.291 1.291 14 H -0.289 1.289 15 N -0.708 5.708 16 C 0.599 3.401 17 O -0.557 6.557 18 C -0.307 4.307 19 C 0.131 3.869 20 N -0.474 5.474 21 C 0.151 3.849 22 C -0.017 4.017 23 C -0.118 4.118 24 C -0.226 4.226 25 C 0.010 3.990 26 O -0.182 6.182 27 S 0.188 5.812 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.018 0.982 34 H 0.010 0.990 35 H 0.376 0.624 36 H 0.253 0.747 37 H 0.405 0.595 38 H 0.204 0.796 39 H 0.166 0.834 40 H 0.187 0.813 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.669 -4.842 -26.853 28.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.047 3.953 3 H 0.096 0.904 4 C -0.158 4.158 5 C 0.026 3.974 6 N -0.388 5.388 7 C -0.380 4.380 8 H 0.088 0.912 9 C -0.265 4.265 10 N -0.617 5.617 11 Si 0.801 3.199 12 H -0.194 1.194 13 H -0.218 1.218 14 H -0.216 1.216 15 N -0.359 5.359 16 C 0.385 3.615 17 O -0.438 6.438 18 C -0.432 4.432 19 C -0.030 4.030 20 N -0.189 5.189 21 C -0.118 4.118 22 C -0.070 4.070 23 C -0.143 4.143 24 C -0.245 4.245 25 C -0.060 4.060 26 O -0.078 6.078 27 S 0.449 5.551 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.036 0.964 34 H 0.028 0.972 35 H 0.209 0.791 36 H 0.062 0.938 37 H 0.240 0.760 38 H 0.220 0.780 39 H 0.184 0.816 40 H 0.204 0.796 41 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -6.640 -4.781 -26.312 27.555 hybrid contribution 0.777 0.396 0.490 1.001 sum -5.862 -4.384 -25.822 26.840 Atomic orbital electron populations 1.22100 0.93038 1.03124 1.02918 1.20977 0.95271 0.96651 0.82419 0.90353 1.21929 0.94603 1.01816 0.97498 1.20768 0.93516 0.94370 0.88751 1.42545 1.04529 1.65238 1.26449 1.19614 0.85249 1.27683 1.05416 0.91204 1.25546 1.02018 1.01136 0.97783 1.69810 1.34511 1.41803 1.15590 0.85100 0.80122 0.77138 0.77561 1.19403 1.21847 1.21627 1.46037 1.66420 1.14178 1.09296 1.16720 0.77060 0.85702 0.81985 1.90822 1.52146 1.15797 1.85050 1.25883 1.18322 0.98621 1.00327 1.22464 0.93876 1.01364 0.85249 1.66410 1.16904 1.00762 1.34840 1.24551 1.00922 0.92697 0.93659 1.18614 1.12262 0.82876 0.93250 1.22296 0.98767 1.00867 0.92331 1.22265 1.07606 0.92003 1.02606 1.25371 0.97888 0.99924 0.82809 1.84078 1.65748 1.19273 1.38730 1.85055 1.57089 1.05275 1.07682 0.92797 0.91185 0.89926 0.89375 0.90337 0.96406 0.97187 0.79132 0.93843 0.75958 0.77984 0.81609 0.79563 0.72946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.48 71.98 0.68 -2.62 16 2 C 0.15 3.97 2.57 44.99 0.12 4.09 16 3 H 0.08 2.33 7.58 -2.39 -0.02 2.31 16 4 C -0.12 -3.57 4.87 30.60 0.15 -3.42 16 5 C 0.15 6.09 6.15 86.38 0.53 6.62 16 6 N -0.74 -37.88 5.60 -343.45 -1.92 -39.80 16 7 C -0.25 -14.03 9.99 84.03 0.84 -13.20 16 8 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 9 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 10 N -0.97 -58.82 13.06 21.65 0.28 -58.54 16 11 Si 0.97 46.32 29.55 68.60 2.03 48.35 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 13 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 14 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 15 N -0.71 -18.40 4.53 -446.73 -2.02 -20.42 16 16 C 0.60 17.03 7.74 86.37 0.67 17.70 16 17 O -0.56 -18.80 16.52 -4.44 -0.07 -18.87 16 18 C -0.31 -7.67 6.50 24.07 0.16 -7.52 16 19 C 0.13 3.09 11.04 84.58 0.93 4.03 16 20 N -0.47 -11.24 10.47 -188.72 -1.98 -13.22 16 21 C 0.15 3.41 7.44 87.09 0.65 4.06 16 22 C -0.02 -0.34 7.21 24.10 0.17 -0.17 16 23 C -0.12 -1.84 10.79 22.43 0.24 -1.60 16 24 C -0.23 -2.22 10.88 22.09 0.24 -1.98 16 25 C 0.01 0.09 12.08 67.06 0.81 0.90 16 26 O -0.18 -3.16 10.67 -6.36 -0.07 -3.22 16 27 S 0.19 4.12 22.52 -56.49 -1.27 2.84 16 28 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.02 0.72 7.75 -2.39 -0.02 0.70 16 34 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.38 19.97 7.67 -92.71 -0.71 19.26 16 36 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 37 H 0.40 9.56 7.77 -92.71 -0.72 8.84 16 38 H 0.20 4.20 8.06 -2.91 -0.02 4.18 16 39 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 40 H 0.19 0.68 8.06 -2.91 -0.02 0.66 16 41 H 0.25 -0.09 8.06 -2.91 -0.02 -0.11 16 Total: -1.00 -73.26 374.48 1.28 -71.98 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: -0.35 Total: 27.73 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 6.66 Total: 3.19 kcal Atomic # 7 Polarization: -126.34 SS G_CDS: -5.64 Total: -131.98 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.14 Total: -22.10 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Atomic # 16 Polarization: 4.12 SS G_CDS: -1.27 Total: 2.84 kcal Total: -73.26 1.28 -71.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482887719.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.344 kcal (2) G-P(sol) polarization free energy of solvation -73.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds