Wall clock time and date at job start Tue Mar 31 2020 19:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46755 * 2 1 4 4 C 1.52997 * 109.47336 * 119.99844 * 2 1 3 5 5 N 1.46493 * 109.47519 * 174.99963 * 4 2 1 6 6 C 1.46501 * 120.00211 * 270.00599 * 5 4 2 7 7 C 1.36939 * 120.00005 * 89.99807 * 5 4 2 8 8 H 1.08002 * 119.99446 * 23.63237 * 7 5 4 9 9 C 1.38810 * 120.00468 * 203.63058 * 7 5 4 10 10 N 1.31621 * 119.99805 * 11.30097 * 9 7 5 11 11 Si 1.86794 * 120.00261 * 191.30516 * 9 7 5 12 12 H 1.48505 * 109.47046 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47191 * 119.99578 * 11 9 7 14 14 H 1.48503 * 109.47170 * 240.00040 * 11 9 7 15 15 N 1.46506 * 109.47217 * 240.00248 * 2 1 3 16 16 C 1.34774 * 119.99758 * 84.99858 * 15 2 1 17 17 O 1.21625 * 120.00683 * 359.97438 * 16 15 2 18 18 C 1.47300 * 119.99567 * 179.97438 * 16 15 2 19 19 C 1.35172 * 122.41876 * 179.97438 * 18 16 15 20 20 S 1.71003 * 109.16278 * 179.97438 * 19 18 16 21 21 C 1.75996 * 90.59493 * 0.02562 * 20 19 18 22 22 C 1.47144 * 125.32590 * 180.02562 * 21 20 19 23 23 C 1.36230 * 125.96181 * 359.96586 * 22 21 20 24 24 C 1.40763 * 106.72460 * 180.02562 * 23 22 21 25 25 C 1.34836 * 107.07521 * 0.02562 * 24 23 22 26 26 O 1.34247 * 108.71663 * 359.73549 * 25 24 23 27 27 N 1.30126 * 109.34271 * 359.75368 * 21 20 19 28 28 H 1.08989 * 109.47067 * 299.99920 * 1 2 3 29 29 H 1.09001 * 109.47004 * 60.00148 * 1 2 3 30 30 H 1.08997 * 109.46768 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47011 * 295.00543 * 4 2 1 32 32 H 1.09009 * 109.46897 * 55.00036 * 4 2 1 33 33 H 1.09003 * 109.47182 * 94.55082 * 6 5 4 34 34 H 1.09000 * 109.47002 * 214.55174 * 6 5 4 35 35 H 1.09000 * 109.46967 * 334.54737 * 6 5 4 36 36 H 0.96994 * 120.00033 * 180.02562 * 10 9 7 37 37 H 0.96997 * 119.99624 * 265.00120 * 15 2 1 38 38 H 1.07998 * 125.41604 * 359.97438 * 19 18 16 39 39 H 1.08001 * 126.63750 * 359.97438 * 23 22 21 40 40 H 1.08007 * 126.46193 * 180.02562 * 24 23 22 41 41 H 1.07995 * 125.64193 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1906 6 6 4.1259 -1.9919 0.5612 7 6 4.2799 0.1649 1.7240 8 1 3.8834 0.8069 2.4967 9 6 5.5799 0.3445 1.2717 10 7 5.9918 -0.2792 0.1883 11 14 6.7448 1.4712 2.2006 12 1 6.0436 2.0478 3.3759 13 1 7.9236 0.6941 2.6604 14 1 7.1932 2.5672 1.3044 15 7 2.0184 -0.6906 -1.1962 16 6 2.1471 -0.0181 -2.3571 17 8 1.8574 1.1618 -2.4119 18 6 2.6387 -0.7124 -3.5597 19 6 2.7860 -0.0862 -4.7486 20 16 3.3746 -1.2031 -5.9020 21 6 3.3876 -2.4776 -4.6884 22 6 3.8075 -3.8687 -4.9200 23 6 4.2483 -4.3853 -6.1010 24 6 4.5377 -5.7427 -5.8666 25 6 4.2627 -5.9879 -4.5695 26 8 3.8273 -4.8531 -3.9995 27 7 2.9732 -1.9958 -3.5529 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7517 -0.1583 2.1369 32 1 1.6054 -1.7198 1.2951 33 1 4.3536 -1.7640 -0.4802 34 1 5.0471 -2.2389 1.0889 35 1 3.4426 -2.8399 0.6065 36 1 6.9003 -0.1540 -0.1276 37 1 2.2491 -1.6317 -1.1527 38 1 2.5668 0.9539 -4.9395 39 1 4.3543 -3.8559 -7.0364 40 1 4.9098 -6.4538 -6.5893 41 1 4.3777 -6.9387 -4.0706 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483377807.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:56 Heat of formation + Delta-G solvation = 54.397434 kcal Electronic energy + Delta-G solvation = -26575.366660 eV Core-core repulsion = 22778.191552 eV Total energy + Delta-G solvation = -3797.175108 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.67705 -40.17228 -38.34451 -36.24998 -33.96955 -33.31615 -31.86341 -31.17019 -30.12315 -28.99058 -26.08795 -25.80258 -25.46005 -23.40074 -22.05587 -21.55570 -20.57299 -20.00304 -19.29235 -18.68180 -17.47987 -16.76147 -16.32947 -16.28071 -15.66805 -15.22801 -14.95754 -14.73457 -14.01078 -13.76875 -13.52533 -13.36856 -13.19486 -13.12256 -13.07397 -12.77502 -12.67660 -12.14869 -12.02126 -11.82892 -11.38343 -11.02550 -10.81065 -10.72634 -10.48401 -10.30010 -10.14404 -10.03604 -9.97089 -9.88499 -9.80750 -9.54190 -9.38258 -8.54870 -8.34280 -8.12877 -6.67424 -5.65754 -3.12822 0.14735 0.86692 1.45408 1.48793 2.17811 2.66365 2.90864 3.41563 3.48556 3.50515 3.62726 3.84218 3.98842 4.55486 4.69021 4.71542 4.91732 5.21000 5.27798 5.40753 5.53424 5.54796 5.55760 5.70146 5.74700 5.87507 5.96684 6.05469 6.16681 6.18627 6.30163 6.52277 6.59003 6.76766 6.84069 6.92660 7.19033 7.41727 7.43526 7.81064 7.87484 8.19029 8.45529 8.78690 9.29242 9.92004 10.40849 11.38634 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010660 B = 0.003913 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.081841 B = 7154.553876 C = 7915.452445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.115 3.885 3 H 0.087 0.913 4 C 0.143 3.857 5 N -0.597 5.597 6 C 0.162 3.838 7 C -0.256 4.256 8 H 0.068 0.932 9 C 0.005 3.995 10 N -0.902 5.902 11 Si 0.902 3.098 12 H -0.278 1.278 13 H -0.291 1.291 14 H -0.291 1.291 15 N -0.675 5.675 16 C 0.593 3.407 17 O -0.547 6.547 18 C 0.032 3.968 19 C -0.218 4.218 20 S 0.207 5.793 21 C 0.102 3.898 22 C 0.060 3.940 23 C -0.175 4.175 24 C -0.215 4.215 25 C -0.017 4.017 26 O -0.147 6.147 27 N -0.411 5.411 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.035 0.965 34 H 0.041 0.959 35 H -0.006 1.006 36 H 0.249 0.751 37 H 0.405 0.595 38 H 0.195 0.805 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.711 -10.187 -14.784 19.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.007 3.993 3 H 0.105 0.895 4 C 0.015 3.985 5 N -0.319 5.319 6 C 0.018 3.982 7 C -0.385 4.385 8 H 0.086 0.914 9 C -0.193 4.193 10 N -0.547 5.547 11 Si 0.732 3.268 12 H -0.203 1.203 13 H -0.217 1.217 14 H -0.218 1.218 15 N -0.323 5.323 16 C 0.375 3.625 17 O -0.426 6.426 18 C -0.105 4.105 19 C -0.359 4.359 20 S 0.464 5.536 21 C -0.173 4.173 22 C 0.006 3.994 23 C -0.198 4.198 24 C -0.234 4.234 25 C -0.088 4.088 26 O -0.041 6.041 27 N -0.126 5.126 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.013 0.987 36 H 0.060 0.940 37 H 0.241 0.759 38 H 0.212 0.788 39 H 0.172 0.828 40 H 0.173 0.827 41 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -6.613 -9.535 -15.086 19.032 hybrid contribution 0.810 0.627 0.975 1.415 sum -5.802 -8.908 -14.110 17.667 Atomic orbital electron populations 1.22153 0.96722 1.01200 1.01715 1.21974 0.91792 0.99227 0.86300 0.89480 1.21197 0.85939 0.97247 0.94164 1.43910 0.99002 1.20926 1.68107 1.20844 0.94372 0.84964 0.98043 1.19214 0.94585 1.10562 1.14177 0.91404 1.25033 0.98916 0.99061 0.96338 1.70080 1.16967 1.45556 1.22052 0.86222 0.81108 0.80260 0.79170 1.20323 1.21745 1.21832 1.45640 1.63940 1.14283 1.08458 1.16947 0.77798 0.85669 0.82101 1.90756 1.52110 1.14788 1.84903 1.20357 1.05183 0.88996 0.95937 1.26619 1.06012 1.06807 0.96500 1.83497 1.58501 0.99014 1.12591 1.24281 1.05801 0.94954 0.92264 1.18870 1.06911 0.85761 0.87901 1.21765 1.04780 0.95531 0.97695 1.21708 1.08126 0.96507 0.97072 1.24351 1.01203 0.89495 0.93718 1.84237 1.65252 1.17047 1.37527 1.67184 1.10893 1.11181 1.23391 0.91932 0.92973 0.93118 0.92175 0.93983 0.94667 0.94060 0.98722 0.94029 0.75874 0.78819 0.82800 0.82731 0.77424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 9.48 37.16 0.35 -2.18 16 2 C 0.11 2.29 2.88 -67.93 -0.20 2.09 16 3 H 0.09 2.04 7.58 -51.93 -0.39 1.65 16 4 C 0.14 2.93 5.33 -4.05 -0.02 2.90 16 5 N -0.60 -15.07 2.78 -181.12 -0.50 -15.58 16 6 C 0.16 4.06 7.61 59.85 0.46 4.52 16 7 C -0.26 -7.15 9.66 -15.06 -0.15 -7.30 16 8 H 0.07 1.86 7.85 -52.49 -0.41 1.45 16 9 C 0.01 0.15 5.13 -17.43 -0.09 0.06 16 10 N -0.90 -26.99 10.66 55.49 0.59 -26.39 16 11 Si 0.90 22.59 29.57 -169.99 -5.03 17.56 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 13 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 14 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 15 N -0.68 -13.88 4.41 -54.92 -0.24 -14.12 16 16 C 0.59 12.56 7.76 -12.58 -0.10 12.46 16 17 O -0.55 -12.68 16.31 5.26 0.09 -12.59 16 18 C 0.03 0.58 6.64 -84.93 -0.56 0.02 16 19 C -0.22 -3.24 10.56 29.64 0.31 -2.93 16 20 S 0.21 2.37 22.93 -107.50 -2.46 -0.09 16 21 C 0.10 1.53 7.46 -14.66 -0.11 1.42 16 22 C 0.06 0.81 7.24 -36.69 -0.27 0.54 16 23 C -0.17 -1.80 10.62 -39.35 -0.42 -2.22 16 24 C -0.22 -1.89 10.88 -39.83 -0.43 -2.32 16 25 C -0.02 -0.16 12.08 29.53 0.36 0.19 16 26 O -0.15 -2.04 10.67 4.53 0.05 -1.99 16 27 N -0.41 -7.40 10.08 -8.27 -0.08 -7.48 16 28 H 0.06 0.88 8.14 -51.94 -0.42 0.46 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 1.18 8.03 -51.93 -0.42 0.76 16 32 H 0.04 0.77 7.86 -51.92 -0.41 0.37 16 33 H 0.04 0.96 6.90 -51.93 -0.36 0.60 16 34 H 0.04 1.12 7.30 -51.93 -0.38 0.74 16 35 H -0.01 -0.13 7.84 -51.93 -0.41 -0.53 16 36 H 0.25 7.31 8.31 -40.82 -0.34 6.98 16 37 H 0.41 8.26 6.65 -40.82 -0.27 7.99 16 38 H 0.19 2.60 7.99 -52.49 -0.42 2.18 16 39 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.16 0.90 8.06 -52.48 -0.42 0.48 16 41 H 0.21 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 366.97 15.07 5.53 5.53 Total: -1.00 -34.74 366.97 -8.06 -42.81 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -5.14 Total: 5.10 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -0.86 Total: 7.25 kcal Atomic # 7 Polarization: -63.34 SS G_CDS: -0.24 Total: -63.57 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: 0.13 Total: -14.58 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.03 Total: 17.56 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -2.46 Total: -0.09 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.74 -8.06 -42.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483377807.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.205 kcal (2) G-P(sol) polarization free energy of solvation -34.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds