Wall clock time and date at job start Tue Mar 31 2020 19:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46755 * 2 1 4 4 C 1.52997 * 109.47336 * 119.99844 * 2 1 3 5 5 N 1.46493 * 109.47519 * 174.99963 * 4 2 1 6 6 C 1.46501 * 120.00211 * 270.00599 * 5 4 2 7 7 C 1.36939 * 120.00005 * 89.99807 * 5 4 2 8 8 H 1.08002 * 119.99446 * 23.63237 * 7 5 4 9 9 C 1.38810 * 120.00468 * 203.63058 * 7 5 4 10 10 N 1.31621 * 119.99805 * 11.30097 * 9 7 5 11 11 Si 1.86794 * 120.00261 * 191.30516 * 9 7 5 12 12 H 1.48505 * 109.47046 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47191 * 119.99578 * 11 9 7 14 14 H 1.48503 * 109.47170 * 240.00040 * 11 9 7 15 15 N 1.46506 * 109.47217 * 240.00248 * 2 1 3 16 16 C 1.34774 * 119.99758 * 84.99858 * 15 2 1 17 17 O 1.21625 * 120.00683 * 359.97438 * 16 15 2 18 18 C 1.47300 * 119.99567 * 179.97438 * 16 15 2 19 19 C 1.35172 * 122.41876 * 179.97438 * 18 16 15 20 20 S 1.71003 * 109.16278 * 179.97438 * 19 18 16 21 21 C 1.75996 * 90.59493 * 0.02562 * 20 19 18 22 22 C 1.47144 * 125.32590 * 180.02562 * 21 20 19 23 23 C 1.36230 * 125.96181 * 359.96586 * 22 21 20 24 24 C 1.40763 * 106.72460 * 180.02562 * 23 22 21 25 25 C 1.34836 * 107.07521 * 0.02562 * 24 23 22 26 26 O 1.34247 * 108.71663 * 359.73549 * 25 24 23 27 27 N 1.30126 * 109.34271 * 359.75368 * 21 20 19 28 28 H 1.08989 * 109.47067 * 299.99920 * 1 2 3 29 29 H 1.09001 * 109.47004 * 60.00148 * 1 2 3 30 30 H 1.08997 * 109.46768 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47011 * 295.00543 * 4 2 1 32 32 H 1.09009 * 109.46897 * 55.00036 * 4 2 1 33 33 H 1.09003 * 109.47182 * 94.55082 * 6 5 4 34 34 H 1.09000 * 109.47002 * 214.55174 * 6 5 4 35 35 H 1.09000 * 109.46967 * 334.54737 * 6 5 4 36 36 H 0.96994 * 120.00033 * 180.02562 * 10 9 7 37 37 H 0.96997 * 119.99624 * 265.00120 * 15 2 1 38 38 H 1.07998 * 125.41604 * 359.97438 * 19 18 16 39 39 H 1.08001 * 126.63750 * 359.97438 * 23 22 21 40 40 H 1.08007 * 126.46193 * 180.02562 * 24 23 22 41 41 H 1.07995 * 125.64193 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1906 6 6 4.1259 -1.9919 0.5612 7 6 4.2799 0.1649 1.7240 8 1 3.8834 0.8069 2.4967 9 6 5.5799 0.3445 1.2717 10 7 5.9918 -0.2792 0.1883 11 14 6.7448 1.4712 2.2006 12 1 6.0436 2.0478 3.3759 13 1 7.9236 0.6941 2.6604 14 1 7.1932 2.5672 1.3044 15 7 2.0184 -0.6906 -1.1962 16 6 2.1471 -0.0181 -2.3571 17 8 1.8574 1.1618 -2.4119 18 6 2.6387 -0.7124 -3.5597 19 6 2.7860 -0.0862 -4.7486 20 16 3.3746 -1.2031 -5.9020 21 6 3.3876 -2.4776 -4.6884 22 6 3.8075 -3.8687 -4.9200 23 6 4.2483 -4.3853 -6.1010 24 6 4.5377 -5.7427 -5.8666 25 6 4.2627 -5.9879 -4.5695 26 8 3.8273 -4.8531 -3.9995 27 7 2.9732 -1.9958 -3.5529 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7517 -0.1583 2.1369 32 1 1.6054 -1.7198 1.2951 33 1 4.3536 -1.7640 -0.4802 34 1 5.0471 -2.2389 1.0889 35 1 3.4426 -2.8399 0.6065 36 1 6.9003 -0.1540 -0.1276 37 1 2.2491 -1.6317 -1.1527 38 1 2.5668 0.9539 -4.9395 39 1 4.3543 -3.8559 -7.0364 40 1 4.9098 -6.4538 -6.5893 41 1 4.3777 -6.9387 -4.0706 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483377807.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:55 Heat of formation + Delta-G solvation = 30.352899 kcal Electronic energy + Delta-G solvation = -26576.409309 eV Core-core repulsion = 22778.191552 eV Total energy + Delta-G solvation = -3798.217757 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.50309 -41.52618 -39.78931 -38.04433 -35.81815 -34.15331 -33.21647 -32.80268 -31.77217 -29.98646 -28.02457 -27.45822 -26.87085 -24.63864 -23.36365 -22.85804 -21.80990 -21.51364 -20.57716 -19.80828 -18.81368 -18.45930 -17.70276 -17.21135 -17.02896 -16.82718 -16.46729 -16.19891 -15.60142 -15.42043 -15.12586 -14.85545 -14.61147 -14.50194 -13.95463 -13.83714 -13.80765 -13.48502 -13.43558 -13.14165 -13.10610 -12.86655 -12.72040 -12.54711 -12.34856 -12.06528 -11.84431 -11.76333 -11.28722 -11.26666 -11.05078 -10.85712 -10.67503 -10.40375 -9.97302 -9.07634 -8.75406 -7.82761 -5.31373 -0.90793 -0.13774 0.34083 0.37542 1.24200 1.41297 1.42510 1.52622 1.74012 2.09319 2.23388 2.43765 2.49419 2.82087 3.30776 3.64194 3.69677 3.99140 4.01574 4.09822 4.14739 4.16612 4.37746 4.47774 4.62470 4.73421 4.76059 4.78983 4.85849 4.95101 4.96462 5.02521 5.13980 5.29774 5.34104 5.51934 5.61724 5.63360 5.75796 6.02021 6.29079 6.31890 6.62521 7.14563 7.19412 7.86168 8.29407 9.19643 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010660 B = 0.003913 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.081841 B = 7154.553876 C = 7915.452445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.118 3.882 3 H 0.044 0.956 4 C 0.142 3.858 5 N -0.611 5.611 6 C 0.182 3.818 7 C -0.261 4.261 8 H 0.072 0.928 9 C -0.051 4.051 10 N -0.932 5.932 11 Si 0.963 3.037 12 H -0.264 1.264 13 H -0.290 1.290 14 H -0.299 1.299 15 N -0.676 5.676 16 C 0.582 3.418 17 O -0.581 6.581 18 C -0.003 4.003 19 C -0.232 4.232 20 S 0.324 5.676 21 C 0.083 3.917 22 C 0.009 3.991 23 C -0.153 4.153 24 C -0.215 4.215 25 C -0.016 4.016 26 O -0.183 6.183 27 N -0.454 5.454 28 H 0.084 0.916 29 H 0.041 0.959 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.007 0.993 34 H 0.011 0.989 35 H 0.027 0.973 36 H 0.242 0.758 37 H 0.405 0.595 38 H 0.203 0.797 39 H 0.181 0.819 40 H 0.190 0.810 41 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.986 -11.723 -16.186 21.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.011 3.989 3 H 0.063 0.937 4 C 0.015 3.985 5 N -0.333 5.333 6 C 0.037 3.963 7 C -0.391 4.391 8 H 0.090 0.910 9 C -0.247 4.247 10 N -0.579 5.579 11 Si 0.792 3.208 12 H -0.188 1.188 13 H -0.217 1.217 14 H -0.227 1.227 15 N -0.324 5.324 16 C 0.366 3.634 17 O -0.463 6.463 18 C -0.140 4.140 19 C -0.375 4.375 20 S 0.582 5.418 21 C -0.191 4.191 22 C -0.044 4.044 23 C -0.176 4.176 24 C -0.234 4.234 25 C -0.086 4.086 26 O -0.079 6.079 27 N -0.170 5.170 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.025 0.975 34 H 0.030 0.970 35 H 0.045 0.955 36 H 0.051 0.949 37 H 0.241 0.759 38 H 0.220 0.780 39 H 0.198 0.802 40 H 0.207 0.793 41 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -6.924 -11.081 -16.481 21.032 hybrid contribution 0.901 0.955 1.285 1.837 sum -6.023 -10.126 -15.196 19.229 Atomic orbital electron populations 1.22019 0.93226 1.02760 1.02325 1.21844 0.94430 0.96633 0.86014 0.93739 1.21394 0.83291 0.99127 0.94694 1.44099 1.00922 1.20428 1.67878 1.20517 0.93942 0.86046 0.95821 1.19563 0.95071 1.10550 1.13941 0.91039 1.25774 1.00600 1.00946 0.97334 1.70269 1.16703 1.47295 1.23598 0.85252 0.79121 0.78195 0.78202 1.18790 1.21653 1.22682 1.45695 1.63875 1.14189 1.08620 1.17455 0.77231 0.85537 0.83136 1.90702 1.53804 1.16088 1.85699 1.20057 1.08093 0.89952 0.95873 1.26943 1.05358 1.08172 0.97008 1.82918 1.55405 0.94917 1.08523 1.24825 1.04724 0.96634 0.92934 1.19116 1.10475 0.85598 0.89201 1.22226 1.01837 0.96243 0.97341 1.22163 1.07469 0.96356 0.97370 1.25253 0.99390 0.89466 0.94519 1.84206 1.66361 1.18366 1.38976 1.67116 1.13051 1.11154 1.25637 0.89682 0.93976 0.91000 0.90928 0.91118 0.97499 0.97013 0.95486 0.94857 0.75887 0.78020 0.80167 0.79298 0.74087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.50 9.48 71.98 0.68 -3.81 16 2 C 0.12 4.79 2.88 44.99 0.13 4.92 16 3 H 0.04 2.18 7.58 -2.39 -0.02 2.17 16 4 C 0.14 5.72 5.33 86.38 0.46 6.18 16 5 N -0.61 -31.20 2.78 -726.93 -2.02 -33.22 16 6 C 0.18 9.32 7.61 127.77 0.97 10.29 16 7 C -0.26 -14.79 9.66 84.03 0.81 -13.98 16 8 H 0.07 3.93 7.85 -2.91 -0.02 3.90 16 9 C -0.05 -3.01 5.13 84.86 0.44 -2.57 16 10 N -0.93 -57.81 10.66 21.65 0.23 -57.58 16 11 Si 0.96 47.38 29.57 68.60 2.03 49.41 16 12 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 13 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 14 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 15 N -0.68 -28.94 4.41 -445.90 -1.97 -30.91 16 16 C 0.58 26.07 7.76 86.63 0.67 26.74 16 17 O -0.58 -28.52 16.31 -4.11 -0.07 -28.59 16 18 C 0.00 -0.13 6.64 40.70 0.27 0.14 16 19 C -0.23 -7.02 10.56 67.11 0.71 -6.31 16 20 S 0.32 6.91 22.93 -56.49 -1.30 5.62 16 21 C 0.08 2.49 7.46 87.29 0.65 3.14 16 22 C 0.01 0.24 7.24 24.14 0.17 0.41 16 23 C -0.15 -2.77 10.62 22.42 0.24 -2.53 16 24 C -0.21 -3.09 10.88 22.11 0.24 -2.85 16 25 C -0.02 -0.28 12.08 67.04 0.81 0.53 16 26 O -0.18 -5.10 10.67 -6.70 -0.07 -5.17 16 27 N -0.45 -17.03 10.08 -180.09 -1.82 -18.85 16 28 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.07 2.75 8.03 -2.39 -0.02 2.73 16 32 H 0.07 2.46 7.86 -2.38 -0.02 2.44 16 33 H 0.01 0.39 6.90 -2.39 -0.02 0.37 16 34 H 0.01 0.63 7.30 -2.39 -0.02 0.61 16 35 H 0.03 1.18 7.84 -2.39 -0.02 1.16 16 36 H 0.24 14.76 8.31 -92.71 -0.77 13.99 16 37 H 0.41 17.18 6.65 -92.71 -0.62 16.56 16 38 H 0.20 5.53 7.99 -2.91 -0.02 5.50 16 39 H 0.18 2.09 8.06 -2.91 -0.02 2.06 16 40 H 0.19 1.32 8.06 -2.91 -0.02 1.30 16 41 H 0.24 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -80.59 366.97 2.73 -77.86 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 0.45 Total: 21.12 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: 7.26 Total: 20.32 kcal Atomic # 7 Polarization: -134.99 SS G_CDS: -5.57 Total: -140.56 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -0.14 Total: -33.76 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Atomic # 16 Polarization: 6.91 SS G_CDS: -1.30 Total: 5.62 kcal Total: -80.59 2.73 -77.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483377807.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.209 kcal (2) G-P(sol) polarization free energy of solvation -80.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds