Wall clock time and date at job start Tue Mar 31 2020 18:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 C 1.52999 * 109.47114 * 184.99769 * 3 2 1 6 6 N 1.46500 * 109.47226 * 184.99495 * 5 3 2 7 7 C 1.34776 * 119.99923 * 180.02562 * 6 5 3 8 8 O 1.21622 * 120.00419 * 0.02562 * 7 6 5 9 9 C 1.47304 * 119.99568 * 180.02562 * 7 6 5 10 10 C 1.35170 * 122.41034 * 179.97438 * 9 7 6 11 11 S 1.71006 * 109.15836 * 180.02562 * 10 9 7 12 12 C 1.76003 * 90.59533 * 0.02562 * 11 10 9 13 13 C 1.47140 * 125.33025 * 180.02562 * 12 11 10 14 14 C 1.36239 * 125.95537 * 0.02562 * 13 12 11 15 15 C 1.40774 * 106.72069 * 180.02562 * 14 13 12 16 16 C 1.34839 * 107.06950 * 0.02562 * 15 14 13 17 17 O 1.34243 * 108.71991 * 359.73143 * 16 15 14 18 18 N 1.30122 * 109.33980 * 359.73104 * 12 11 10 19 19 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 20 20 C 1.36943 * 119.99752 * 274.72222 * 19 3 2 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 3 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 3 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47213 * 60.00246 * 24 22 20 26 26 H 1.48502 * 109.47317 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47081 * 299.99875 * 24 22 20 28 28 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 30 30 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 31 31 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 32 32 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 33 33 H 1.08995 * 109.47415 * 304.99804 * 5 3 2 34 34 H 1.09008 * 109.47087 * 65.00143 * 5 3 2 35 35 H 0.96998 * 120.00120 * 0.02562 * 6 5 3 36 36 H 1.07994 * 125.42474 * 359.97438 * 10 9 7 37 37 H 1.08000 * 126.64312 * 359.97438 * 14 13 12 38 38 H 1.07995 * 126.46047 * 179.97438 * 15 14 13 39 39 H 1.08000 * 125.63622 * 180.02562 * 16 15 14 40 40 H 0.97001 * 120.00384 * 95.00578 * 19 3 2 41 41 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4442 -0.1257 6 7 4.0632 2.8167 -0.0060 7 6 5.3858 3.0629 -0.0869 8 8 6.1657 2.1458 -0.2597 9 6 5.8868 4.4428 0.0340 10 6 7.2022 4.7451 -0.0392 11 16 7.4011 6.4336 0.1437 12 6 5.6613 6.6388 0.3127 13 6 4.9720 7.9220 0.5210 14 6 5.5674 9.1438 0.6147 15 6 4.5369 10.0825 0.8117 16 6 3.3756 9.3975 0.8293 17 8 3.6414 8.0941 0.6480 18 7 5.0794 5.4788 0.2182 19 7 1.6525 2.0974 1.2518 20 6 0.4178 2.6784 1.3668 21 1 -0.2719 2.6498 0.5362 22 6 0.0527 3.3040 2.5509 23 7 0.8936 3.3393 3.5630 24 14 -1.6317 4.0959 2.7081 25 1 -2.6833 3.0667 2.5072 26 1 -1.7742 4.6923 4.0606 27 1 -1.7768 5.1589 1.6813 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.9955 0.8311 0.6660 34 1 3.8500 1.0376 -1.0960 35 1 3.4412 3.5482 0.1314 36 1 8.0006 4.0334 -0.1884 37 1 6.6252 9.3520 0.5510 38 1 4.6545 11.1497 0.9277 39 1 2.3937 9.8270 0.9621 40 1 2.2720 2.1232 1.9978 41 1 0.6383 3.7761 4.3906 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495052222.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:45 Heat of formation + Delta-G solvation = 34.816242 kcal Electronic energy + Delta-G solvation = -25885.251908 eV Core-core repulsion = 22087.227696 eV Total energy + Delta-G solvation = -3798.024212 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -42.67171 -40.33352 -38.45794 -36.62717 -33.68619 -33.31367 -32.32141 -31.87889 -29.72979 -29.08647 -28.15362 -25.73158 -23.94233 -23.08284 -22.09991 -21.92105 -20.56304 -20.01671 -19.30625 -18.74214 -17.54095 -17.23317 -16.53413 -16.28497 -15.70714 -15.42969 -15.19118 -14.90919 -14.15917 -13.96832 -13.76305 -13.61183 -13.21874 -13.10772 -13.09800 -12.95218 -12.67755 -12.57099 -12.12713 -12.08660 -11.41534 -10.92311 -10.83493 -10.71804 -10.41820 -10.34953 -10.17557 -10.15004 -10.03235 -10.01764 -9.80916 -9.50463 -9.48501 -8.89727 -8.63381 -8.20580 -6.97422 -5.74770 -3.03864 0.03445 0.75426 1.32272 1.39189 2.12982 2.58601 2.90760 3.43773 3.47672 3.49082 3.49424 3.56940 3.83087 4.59332 4.63773 4.70855 4.87477 5.05083 5.13518 5.43462 5.48942 5.51944 5.52869 5.60363 5.69060 5.82569 5.96317 5.99211 5.99697 6.17022 6.19179 6.46007 6.57291 6.61087 6.63043 6.83854 6.90070 7.05383 7.27761 7.30928 7.71429 7.97046 8.41919 8.50224 9.53891 10.08768 10.44535 11.47140 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.009039 B = 0.004174 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3096.839416 B = 6707.082714 C = 9330.556495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.163 3.837 4 H 0.054 0.946 5 C 0.113 3.887 6 N -0.689 5.689 7 C 0.586 3.414 8 O -0.549 6.549 9 C 0.025 3.975 10 C -0.219 4.219 11 S 0.211 5.789 12 C 0.109 3.891 13 C 0.052 3.948 14 C -0.172 4.172 15 C -0.218 4.218 16 C -0.010 4.010 17 O -0.142 6.142 18 N -0.412 5.412 19 N -0.720 5.720 20 C -0.237 4.237 21 H 0.072 0.928 22 C -0.010 4.010 23 N -0.928 5.928 24 Si 0.902 3.098 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.286 1.286 28 H 0.032 0.968 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.421 0.579 36 H 0.196 0.804 37 H 0.154 0.846 38 H 0.156 0.844 39 H 0.210 0.790 40 H 0.385 0.615 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.303 10.892 -8.049 18.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.053 3.947 4 H 0.072 0.928 5 C -0.012 4.012 6 N -0.339 5.339 7 C 0.368 3.632 8 O -0.428 6.428 9 C -0.112 4.112 10 C -0.361 4.361 11 S 0.468 5.532 12 C -0.167 4.167 13 C -0.002 4.002 14 C -0.195 4.195 15 C -0.237 4.237 16 C -0.081 4.081 17 O -0.036 6.036 18 N -0.127 5.127 19 N -0.362 5.362 20 C -0.368 4.368 21 H 0.090 0.910 22 C -0.206 4.206 23 N -0.576 5.576 24 Si 0.734 3.266 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.213 1.213 28 H 0.051 0.949 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.259 0.741 36 H 0.213 0.787 37 H 0.172 0.828 38 H 0.173 0.827 39 H 0.227 0.773 40 H 0.219 0.781 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.736 10.618 -8.155 18.478 hybrid contribution -1.357 0.038 0.527 1.456 sum 11.379 10.655 -7.628 17.355 Atomic orbital electron populations 1.21765 0.95705 0.99592 1.03281 1.22066 0.96991 0.98315 1.00004 1.20561 0.89713 0.92906 0.91558 0.92816 1.21774 0.95947 0.82189 1.01275 1.45863 1.06721 1.11366 1.69996 1.17069 0.83079 0.85504 0.77501 1.90773 1.56445 1.44214 1.51414 1.20289 0.89269 0.94692 1.06954 1.26634 1.01452 1.00993 1.07015 1.83574 1.05457 0.99720 1.64447 1.24325 0.93239 0.92469 1.06626 1.18859 0.81507 0.90704 1.09152 1.21764 1.00841 0.90532 1.06342 1.21712 0.91757 1.01032 1.09215 1.24421 1.00977 0.79962 1.02739 1.84285 1.23287 1.27643 1.68384 1.67241 1.35887 0.97141 1.12394 1.42429 1.16956 1.65689 1.11171 1.19137 0.91956 1.27646 0.98022 0.91009 1.24717 0.97987 1.01446 0.96455 1.69657 1.35185 1.48743 1.04036 0.86343 0.84299 0.79299 0.76690 1.21325 1.21837 1.21313 0.94891 0.89643 0.94125 0.93842 0.92499 0.91525 0.91579 0.74056 0.78715 0.82793 0.82669 0.77349 0.78087 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.18 37.16 0.34 -2.33 16 2 C -0.13 -2.36 5.61 -26.73 -0.15 -2.51 16 3 C 0.16 3.16 2.59 -67.93 -0.18 2.99 16 4 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 5 C 0.11 2.03 5.23 -4.04 -0.02 2.01 16 6 N -0.69 -13.04 5.38 -61.42 -0.33 -13.37 16 7 C 0.59 10.89 7.79 -12.57 -0.10 10.80 16 8 O -0.55 -10.95 16.65 5.26 0.09 -10.87 16 9 C 0.02 0.41 6.64 -84.93 -0.56 -0.16 16 10 C -0.22 -2.80 10.56 29.64 0.31 -2.48 16 11 S 0.21 2.12 22.93 -107.50 -2.46 -0.34 16 12 C 0.11 1.56 7.46 -14.66 -0.11 1.45 16 13 C 0.05 0.71 7.24 -36.69 -0.27 0.44 16 14 C -0.17 -1.77 10.63 -39.34 -0.42 -2.19 16 15 C -0.22 -2.02 10.88 -39.83 -0.43 -2.45 16 16 C -0.01 -0.11 12.08 29.53 0.36 0.25 16 17 O -0.14 -2.15 10.67 4.58 0.05 -2.10 16 18 N -0.41 -7.10 10.08 -8.27 -0.08 -7.18 16 19 N -0.72 -17.21 4.50 -53.43 -0.24 -17.45 16 20 C -0.24 -6.23 7.76 -15.06 -0.12 -6.35 16 21 H 0.07 1.84 7.33 -52.49 -0.38 1.46 16 22 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 23 N -0.93 -27.63 13.06 55.49 0.72 -26.90 16 24 Si 0.90 22.09 29.55 -169.99 -5.02 17.07 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 1.85 6.01 -51.93 -0.31 1.53 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.07 1.09 8.14 -51.92 -0.42 0.66 16 35 H 0.42 8.59 7.61 -40.82 -0.31 8.28 16 36 H 0.20 2.13 7.99 -52.49 -0.42 1.71 16 37 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.16 0.97 8.06 -52.49 -0.42 0.54 16 39 H 0.21 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.39 10.11 7.80 -40.82 -0.32 9.79 16 41 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 369.47 15.07 5.57 5.57 Total: -1.00 -32.56 369.47 -8.26 -40.82 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -5.10 Total: 15.65 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -1.44 Total: -0.89 kcal Atomic # 7 Polarization: -64.98 SS G_CDS: 0.07 Total: -64.91 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.14 Total: -12.97 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -2.46 Total: -0.34 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.56 -8.26 -40.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495052222.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.633 kcal (2) G-P(sol) polarization free energy of solvation -32.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds