Wall clock time and date at job start Tue Mar 31 2020 18:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 C 1.52999 * 109.47114 * 184.99769 * 3 2 1 6 6 N 1.46500 * 109.47226 * 184.99495 * 5 3 2 7 7 C 1.34776 * 119.99923 * 180.02562 * 6 5 3 8 8 O 1.21622 * 120.00419 * 0.02562 * 7 6 5 9 9 C 1.47304 * 119.99568 * 180.02562 * 7 6 5 10 10 C 1.35170 * 122.41034 * 179.97438 * 9 7 6 11 11 S 1.71006 * 109.15836 * 180.02562 * 10 9 7 12 12 C 1.76003 * 90.59533 * 0.02562 * 11 10 9 13 13 C 1.47140 * 125.33025 * 180.02562 * 12 11 10 14 14 C 1.36239 * 125.95537 * 0.02562 * 13 12 11 15 15 C 1.40774 * 106.72069 * 180.02562 * 14 13 12 16 16 C 1.34839 * 107.06950 * 0.02562 * 15 14 13 17 17 O 1.34243 * 108.71991 * 359.73143 * 16 15 14 18 18 N 1.30122 * 109.33980 * 359.73104 * 12 11 10 19 19 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 20 20 C 1.36943 * 119.99752 * 274.72222 * 19 3 2 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 3 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 3 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47213 * 60.00246 * 24 22 20 26 26 H 1.48502 * 109.47317 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47081 * 299.99875 * 24 22 20 28 28 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 30 30 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 31 31 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 32 32 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 33 33 H 1.08995 * 109.47415 * 304.99804 * 5 3 2 34 34 H 1.09008 * 109.47087 * 65.00143 * 5 3 2 35 35 H 0.96998 * 120.00120 * 0.02562 * 6 5 3 36 36 H 1.07994 * 125.42474 * 359.97438 * 10 9 7 37 37 H 1.08000 * 126.64312 * 359.97438 * 14 13 12 38 38 H 1.07995 * 126.46047 * 179.97438 * 15 14 13 39 39 H 1.08000 * 125.63622 * 180.02562 * 16 15 14 40 40 H 0.97001 * 120.00384 * 95.00578 * 19 3 2 41 41 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4442 -0.1257 6 7 4.0632 2.8167 -0.0060 7 6 5.3858 3.0629 -0.0869 8 8 6.1657 2.1458 -0.2597 9 6 5.8868 4.4428 0.0340 10 6 7.2022 4.7451 -0.0392 11 16 7.4011 6.4336 0.1437 12 6 5.6613 6.6388 0.3127 13 6 4.9720 7.9220 0.5210 14 6 5.5674 9.1438 0.6147 15 6 4.5369 10.0825 0.8117 16 6 3.3756 9.3975 0.8293 17 8 3.6414 8.0941 0.6480 18 7 5.0794 5.4788 0.2182 19 7 1.6525 2.0974 1.2518 20 6 0.4178 2.6784 1.3668 21 1 -0.2719 2.6498 0.5362 22 6 0.0527 3.3040 2.5509 23 7 0.8936 3.3393 3.5630 24 14 -1.6317 4.0959 2.7081 25 1 -2.6833 3.0667 2.5072 26 1 -1.7742 4.6923 4.0606 27 1 -1.7768 5.1589 1.6813 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.9955 0.8311 0.6660 34 1 3.8500 1.0376 -1.0960 35 1 3.4412 3.5482 0.1314 36 1 8.0006 4.0334 -0.1884 37 1 6.6252 9.3520 0.5510 38 1 4.6545 11.1497 0.9277 39 1 2.3937 9.8270 0.9621 40 1 2.2720 2.1232 1.9978 41 1 0.6383 3.7761 4.3906 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495052222.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:44 Heat of formation + Delta-G solvation = 11.568863 kcal Electronic energy + Delta-G solvation = -25886.259990 eV Core-core repulsion = 22087.227696 eV Total energy + Delta-G solvation = -3799.032294 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.53691 -41.55142 -39.77258 -38.25957 -35.31116 -34.19471 -34.14006 -32.83794 -31.52631 -30.05367 -29.73159 -26.94055 -25.56891 -24.59459 -23.32190 -22.86880 -21.73976 -21.44862 -20.51625 -19.81192 -19.18695 -18.46886 -17.80322 -17.26091 -17.01562 -16.89609 -16.47159 -16.28089 -15.86269 -15.45327 -15.08243 -14.89484 -14.65390 -14.54762 -14.15626 -13.96571 -13.85311 -13.76519 -13.45833 -13.10635 -13.00522 -12.81978 -12.75212 -12.40527 -12.15793 -11.91622 -11.66713 -11.39443 -11.32284 -11.30623 -11.06994 -10.88432 -10.88025 -10.45092 -10.08505 -9.09940 -8.98870 -7.88049 -5.15501 -0.92784 -0.15698 0.32407 0.33675 1.18890 1.47139 1.49347 1.54647 1.70224 2.09403 2.19888 2.28864 2.58711 2.78409 3.45506 3.61797 3.85784 3.91384 3.97724 4.01562 4.08463 4.13230 4.35069 4.45233 4.54033 4.56605 4.71852 4.73588 4.84671 4.91717 4.99982 5.06365 5.10905 5.18784 5.39208 5.49794 5.53779 5.58373 5.71881 6.00264 6.25857 6.31275 6.53830 7.04364 7.38698 8.10393 8.35246 9.34961 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.009039 B = 0.004174 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3096.839416 B = 6707.082714 C = 9330.556495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.127 4.127 3 C 0.164 3.836 4 H 0.054 0.946 5 C 0.119 3.881 6 N -0.696 5.696 7 C 0.583 3.417 8 O -0.570 6.570 9 C -0.012 4.012 10 C -0.221 4.221 11 S 0.335 5.665 12 C 0.078 3.922 13 C 0.006 3.994 14 C -0.151 4.151 15 C -0.211 4.211 16 C -0.024 4.024 17 O -0.188 6.188 18 N -0.461 5.461 19 N -0.728 5.728 20 C -0.218 4.218 21 H 0.079 0.921 22 C -0.074 4.074 23 N -0.969 5.969 24 Si 0.962 3.038 25 H -0.278 1.278 26 H -0.301 1.301 27 H -0.281 1.281 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.412 0.588 36 H 0.213 0.787 37 H 0.187 0.813 38 H 0.191 0.809 39 H 0.235 0.765 40 H 0.371 0.629 41 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.629 12.439 -9.427 20.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.167 4.167 3 C 0.055 3.945 4 H 0.072 0.928 5 C -0.005 4.005 6 N -0.345 5.345 7 C 0.368 3.632 8 O -0.451 6.451 9 C -0.148 4.148 10 C -0.364 4.364 11 S 0.594 5.406 12 C -0.196 4.196 13 C -0.047 4.047 14 C -0.174 4.174 15 C -0.230 4.230 16 C -0.094 4.094 17 O -0.084 6.084 18 N -0.177 5.177 19 N -0.368 5.368 20 C -0.350 4.350 21 H 0.097 0.903 22 C -0.266 4.266 23 N -0.620 5.620 24 Si 0.792 3.208 25 H -0.205 1.205 26 H -0.228 1.228 27 H -0.207 1.207 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.249 0.751 36 H 0.230 0.770 37 H 0.204 0.796 38 H 0.208 0.792 39 H 0.251 0.749 40 H 0.202 0.798 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.068 12.154 -9.590 20.919 hybrid contribution -1.655 -0.346 0.870 1.901 sum 12.414 11.808 -8.720 19.224 Atomic orbital electron populations 1.21692 0.95898 1.00678 1.01724 1.21966 0.96698 0.96816 1.01253 1.20728 0.90730 0.93657 0.89378 0.92827 1.21726 0.94715 0.82060 1.01983 1.45918 1.07034 1.11189 1.70392 1.17433 0.82604 0.86615 0.76590 1.90732 1.56631 1.45197 1.52578 1.20029 0.90616 0.93672 1.10510 1.27032 1.00587 1.03869 1.04872 1.83009 1.00543 0.95964 1.61122 1.24803 0.96249 0.92071 1.06440 1.19285 0.81526 0.91665 1.12260 1.22234 1.02501 0.89204 1.03456 1.22169 0.90646 1.02484 1.07695 1.25192 1.03032 0.78915 1.02222 1.84241 1.24610 1.29905 1.69634 1.67173 1.37844 0.98274 1.14449 1.42551 1.15983 1.66057 1.12241 1.19454 0.92482 1.25489 0.97590 0.90328 1.25424 1.01257 1.03320 0.96648 1.69825 1.36980 1.50788 1.04379 0.85380 0.80826 0.78560 0.76047 1.20464 1.22783 1.20708 0.92578 0.93398 0.93293 0.90349 0.93380 0.92428 0.89495 0.75106 0.77028 0.79614 0.79155 0.74866 0.79770 0.94535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.03 9.18 71.98 0.66 -4.37 16 2 C -0.13 -4.35 5.61 30.60 0.17 -4.18 16 3 C 0.16 6.38 2.59 44.99 0.12 6.49 16 4 H 0.05 2.11 8.08 -2.39 -0.02 2.09 16 5 C 0.12 4.35 5.23 86.38 0.45 4.80 16 6 N -0.70 -27.46 5.38 -466.48 -2.51 -29.97 16 7 C 0.58 22.44 7.79 86.63 0.68 23.12 16 8 O -0.57 -23.13 16.65 -4.10 -0.07 -23.20 16 9 C -0.01 -0.40 6.64 40.70 0.27 -0.13 16 10 C -0.22 -5.42 10.56 67.11 0.71 -4.71 16 11 S 0.34 5.93 22.93 -56.49 -1.30 4.64 16 12 C 0.08 2.25 7.46 87.29 0.65 2.90 16 13 C 0.01 0.15 7.24 24.14 0.17 0.33 16 14 C -0.15 -2.75 10.63 22.42 0.24 -2.52 16 15 C -0.21 -3.37 10.88 22.11 0.24 -3.13 16 16 C -0.02 -0.49 12.08 67.04 0.81 0.32 16 17 O -0.19 -5.88 10.67 -6.53 -0.07 -5.95 16 18 N -0.46 -16.60 10.08 -180.09 -1.82 -18.42 16 19 N -0.73 -35.81 4.50 -322.94 -1.45 -37.27 16 20 C -0.22 -11.73 7.76 84.03 0.65 -11.08 16 21 H 0.08 4.05 7.33 -2.91 -0.02 4.03 16 22 C -0.07 -4.26 5.50 84.86 0.47 -3.80 16 23 N -0.97 -59.97 13.06 21.65 0.28 -59.68 16 24 Si 0.96 46.53 29.55 68.60 2.03 48.56 16 25 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 26 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 27 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 28 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.05 2.05 6.01 -2.39 -0.01 2.04 16 30 H 0.05 1.61 8.14 -2.39 -0.02 1.60 16 31 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.09 2.80 8.14 -2.38 -0.02 2.78 16 35 H 0.41 17.85 7.61 -92.71 -0.71 17.14 16 36 H 0.21 4.27 7.99 -2.91 -0.02 4.25 16 37 H 0.19 1.97 8.06 -2.91 -0.02 1.95 16 38 H 0.19 1.58 8.06 -2.91 -0.02 1.55 16 39 H 0.24 3.06 8.06 -2.91 -0.02 3.03 16 40 H 0.37 20.35 7.80 -92.71 -0.72 19.63 16 41 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -75.09 369.47 1.04 -74.05 By element: Atomic # 1 Polarization: 43.55 SS G_CDS: -0.34 Total: 43.21 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 6.29 Total: 4.04 kcal Atomic # 7 Polarization: -139.84 SS G_CDS: -5.50 Total: -145.34 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.14 Total: -29.15 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Atomic # 16 Polarization: 5.93 SS G_CDS: -1.30 Total: 4.64 kcal Total: -75.09 1.04 -74.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495052222.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.618 kcal (2) G-P(sol) polarization free energy of solvation -75.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds