Wall clock time and date at job start Tue Mar 31 2020 19:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47568 * 2 1 4 4 C 1.53002 * 109.47338 * 239.99670 * 2 1 3 5 5 N 1.46494 * 109.47172 * 185.00225 * 4 2 1 6 6 C 1.46506 * 120.00031 * 269.99789 * 5 4 2 7 7 C 1.34774 * 120.00371 * 90.00204 * 5 4 2 8 8 O 1.21608 * 119.99810 * 0.21394 * 7 5 4 9 9 C 1.47298 * 120.00338 * 180.21911 * 7 5 4 10 10 C 1.34222 * 124.79306 * 171.09610 * 9 7 5 11 11 C 1.39565 * 115.53340 * 179.97438 * 10 9 7 12 12 C 1.47752 * 129.59547 * 179.97438 * 11 10 9 13 13 C 1.34059 * 119.55831 * 180.02562 * 12 11 10 14 14 N 1.36554 * 121.42291 * 359.96987 * 13 12 11 15 15 H 0.97002 * 119.16032 * 180.02562 * 14 13 12 16 16 C 1.34302 * 121.68182 * 0.04384 * 14 13 12 17 17 O 1.21952 * 119.69821 * 179.97438 * 16 14 13 18 18 C 1.39386 * 112.90121 * 0.02562 * 11 10 9 19 19 S 1.75558 * 124.79210 * 351.05904 * 9 7 5 20 20 N 1.46506 * 109.47248 * 119.99672 * 2 1 3 21 21 C 1.36939 * 119.99765 * 275.00490 * 20 2 1 22 22 H 1.07993 * 120.00054 * 359.97438 * 21 20 2 23 23 C 1.38815 * 119.99490 * 180.02562 * 21 20 2 24 24 N 1.31616 * 120.00291 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99613 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47362 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.47169 * 119.99853 * 25 23 21 28 28 H 1.48495 * 109.47316 * 239.99801 * 25 23 21 29 29 H 1.09006 * 109.47537 * 300.00374 * 1 2 3 30 30 H 1.09005 * 109.47596 * 60.00121 * 1 2 3 31 31 H 1.08998 * 109.47790 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47125 * 65.00082 * 4 2 1 33 33 H 1.09003 * 109.46993 * 304.99947 * 4 2 1 34 34 H 1.09002 * 109.47033 * 263.38433 * 6 5 4 35 35 H 1.08995 * 109.46733 * 23.38483 * 6 5 4 36 36 H 1.08998 * 109.47111 * 143.38266 * 6 5 4 37 37 H 1.08005 * 122.23083 * 359.94161 * 10 9 7 38 38 H 1.08006 * 120.21915 * 359.76346 * 12 11 10 39 39 H 1.07999 * 119.28789 * 180.02562 * 13 12 11 40 40 H 0.96993 * 119.99856 * 94.99180 * 20 2 1 41 41 H 0.96997 * 119.99749 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.3343 0.2339 -1.7612 7 6 4.0757 -1.8987 -0.6114 8 8 3.3832 -2.7808 -0.1412 9 6 5.5437 -2.0021 -0.5481 10 6 6.2166 -2.9314 0.1483 11 6 7.6078 -2.8501 0.0719 12 6 8.6370 -3.7002 0.7052 13 6 9.9343 -3.4372 0.4929 14 7 10.3296 -2.3975 -0.2993 15 1 11.2772 -2.2372 -0.4308 16 6 9.4398 -1.5911 -0.9007 17 8 9.8330 -0.6727 -1.6002 18 6 8.0464 -1.7972 -0.7292 19 16 6.6601 -0.9278 -1.3736 20 7 2.0183 -0.6906 1.1962 21 6 2.1490 -0.0073 2.3758 22 1 1.8924 1.0406 2.4241 23 6 2.6122 -0.6616 3.5091 24 7 2.9254 -1.9386 3.4500 25 14 2.7912 0.2706 5.1180 26 1 2.3772 1.6829 4.9205 27 1 1.9309 -0.3579 6.1525 28 1 4.2082 0.2279 5.5598 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.7517 -0.1585 -2.1369 33 1 1.6054 -1.7199 -1.2950 34 1 4.6398 -0.0470 -2.7691 35 1 3.7654 1.1628 -1.7996 36 1 5.2185 0.3748 -1.1396 37 1 5.7150 -3.6911 0.7295 38 1 8.3462 -4.5254 1.3385 39 1 10.6830 -4.0617 0.9576 40 1 2.2489 -1.6317 1.1527 41 1 3.2487 -2.3957 4.2420 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571394589.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:08 Heat of formation + Delta-G solvation = 7.934747 kcal Electronic energy + Delta-G solvation = -26752.910004 eV Core-core repulsion = 22953.720123 eV Total energy + Delta-G solvation = -3799.189881 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.98073 -39.65535 -37.49618 -36.32587 -35.66781 -34.51898 -32.05030 -31.19166 -29.78470 -28.66249 -27.29762 -26.44461 -24.61923 -23.70943 -23.33748 -21.31003 -20.09302 -19.49547 -18.77233 -17.94374 -17.10970 -16.83629 -16.55830 -15.69040 -15.63013 -15.47264 -15.27845 -14.63220 -14.39920 -14.00180 -13.72560 -13.36298 -13.25962 -13.01941 -12.78664 -12.59504 -12.37031 -12.22744 -12.05787 -11.96077 -11.82874 -11.46661 -11.28105 -10.82243 -10.66866 -10.57123 -10.39236 -10.28379 -10.00328 -9.63881 -9.49693 -9.34160 -8.85307 -8.81591 -8.23617 -7.71596 -6.82039 -5.62446 -2.91709 0.17274 1.37099 1.39639 1.89397 2.22508 2.96095 3.14172 3.40888 3.46817 3.52271 3.54302 3.67150 4.34564 4.54415 4.66046 4.73542 4.96825 5.03310 5.11098 5.32431 5.40758 5.55166 5.63159 5.66291 5.75066 5.77354 5.93149 5.99328 6.01704 6.16052 6.26042 6.29699 6.34874 6.55992 6.64770 6.77369 6.81950 6.87730 7.11913 7.62658 7.78620 7.83954 8.49759 8.58379 9.67010 10.28731 10.67063 11.57970 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011929 B = 0.004256 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.627334 B = 6577.970919 C = 7876.181625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.153 3.847 3 H 0.045 0.955 4 C 0.111 3.889 5 N -0.600 5.600 6 C 0.065 3.935 7 C 0.591 3.409 8 O -0.493 6.493 9 C -0.196 4.196 10 C -0.064 4.064 11 C -0.002 4.002 12 C -0.166 4.166 13 C 0.096 3.904 14 N -0.620 5.620 15 H 0.416 0.584 16 C 0.571 3.429 17 O -0.549 6.549 18 C -0.307 4.307 19 S 0.253 5.747 20 N -0.722 5.722 21 C -0.239 4.239 22 H 0.066 0.934 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.898 3.102 26 H -0.282 1.282 27 H -0.292 1.292 28 H -0.294 1.294 29 H 0.055 0.945 30 H 0.036 0.964 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.162 0.838 38 H 0.151 0.849 39 H 0.165 0.835 40 H 0.398 0.602 41 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.693 -2.015 -11.937 16.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.041 3.959 3 H 0.063 0.937 4 C -0.011 4.011 5 N -0.333 5.333 6 C -0.081 4.081 7 C 0.377 3.623 8 O -0.368 6.368 9 C -0.318 4.318 10 C -0.095 4.095 11 C -0.019 4.019 12 C -0.191 4.191 13 C -0.027 4.027 14 N -0.257 5.257 15 H 0.253 0.747 16 C 0.367 3.633 17 O -0.430 6.430 18 C -0.426 4.426 19 S 0.524 5.476 20 N -0.368 5.368 21 C -0.371 4.371 22 H 0.084 0.916 23 C -0.208 4.208 24 N -0.567 5.567 25 Si 0.729 3.271 26 H -0.207 1.207 27 H -0.220 1.220 28 H -0.221 1.221 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.179 0.821 38 H 0.169 0.831 39 H 0.182 0.818 40 H 0.236 0.764 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.204 -0.568 -12.947 17.131 hybrid contribution 0.827 -0.886 2.192 2.505 sum 12.030 -1.454 -10.754 16.202 Atomic orbital electron populations 1.22407 0.98914 1.01074 1.00034 1.20666 0.92183 0.95619 0.87416 0.93745 1.21946 0.77959 1.02603 0.98639 1.47384 1.07240 1.20252 1.58466 1.21958 0.95380 0.92474 0.98313 1.16883 0.84806 0.82463 0.78155 1.90826 1.62312 1.39489 1.44176 1.24395 0.98145 1.02486 1.06744 1.20084 0.91318 0.99668 0.98472 1.19295 0.93176 0.93937 0.95466 1.21426 0.89848 1.02657 1.05201 1.21371 0.97124 0.90375 0.93854 1.42995 1.11200 1.27672 1.43842 0.74689 1.15816 0.85284 0.82032 0.80212 1.90952 1.80748 1.31269 1.40068 1.24897 0.99281 1.06035 1.12370 1.84508 0.89627 1.26810 1.46633 1.42733 1.77632 1.11712 1.04692 1.19237 1.36518 0.93672 0.87626 0.91626 1.24720 1.02454 0.95911 0.97698 1.69744 1.50422 1.08335 1.28171 0.86258 0.77202 0.78848 0.84750 1.20730 1.21967 1.22097 0.92564 0.94536 0.93290 0.90538 0.89807 0.91839 0.88869 0.90843 0.82085 0.83107 0.81790 0.76367 0.93846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.49 37.15 0.35 -2.57 16 2 C 0.15 3.02 3.20 -67.93 -0.22 2.81 16 3 H 0.04 0.88 8.08 -51.93 -0.42 0.46 16 4 C 0.11 1.83 5.11 -4.04 -0.02 1.80 16 5 N -0.60 -10.08 2.77 -182.90 -0.51 -10.59 16 6 C 0.06 0.82 8.90 59.85 0.53 1.36 16 7 C 0.59 11.63 6.94 -12.58 -0.09 11.54 16 8 O -0.49 -11.53 14.10 5.27 0.07 -11.46 16 9 C -0.20 -3.41 6.15 -37.32 -0.23 -3.64 16 10 C -0.06 -1.07 9.82 -40.50 -0.40 -1.46 16 11 C 0.00 -0.03 6.08 -105.09 -0.64 -0.67 16 12 C -0.17 -1.75 10.29 -37.16 -0.38 -2.13 16 13 C 0.10 0.76 11.11 -16.92 -0.19 0.58 16 14 N -0.62 -6.08 5.23 -14.85 -0.08 -6.16 16 15 H 0.42 2.83 8.87 -40.82 -0.36 2.47 16 16 C 0.57 8.22 7.71 -15.07 -0.12 8.10 16 17 O -0.55 -9.37 17.89 4.96 0.09 -9.28 16 18 C -0.31 -4.64 6.48 -37.76 -0.24 -4.88 16 19 S 0.25 3.67 17.97 -107.50 -1.93 1.74 16 20 N -0.72 -18.61 4.52 -53.42 -0.24 -18.86 16 21 C -0.24 -6.78 9.93 -15.06 -0.15 -6.93 16 22 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 24 N -0.92 -28.50 13.06 55.49 0.72 -27.77 16 25 Si 0.90 22.91 29.55 -169.99 -5.02 17.88 16 26 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 28 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 0.94 8.07 -51.93 -0.42 0.52 16 33 H 0.08 1.48 7.42 -51.93 -0.39 1.10 16 34 H 0.06 0.64 7.74 -51.93 -0.40 0.24 16 35 H 0.09 1.00 8.02 -51.93 -0.42 0.59 16 36 H 0.07 1.02 4.61 -22.89 -0.11 0.91 16 37 H 0.16 2.77 8.00 -52.48 -0.42 2.35 16 38 H 0.15 1.24 8.06 -52.48 -0.42 0.82 16 39 H 0.16 0.54 8.06 -52.49 -0.42 0.12 16 40 H 0.40 11.16 5.02 -40.82 -0.21 10.95 16 41 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 355.65 15.07 5.36 5.36 Total: -1.00 -37.88 355.65 -8.21 -46.09 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -4.79 Total: 9.57 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -1.88 Total: 3.47 kcal Atomic # 7 Polarization: -63.27 SS G_CDS: -0.10 Total: -63.37 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: 0.16 Total: -20.74 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.88 kcal Atomic # 16 Polarization: 3.67 SS G_CDS: -1.93 Total: 1.74 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -37.88 -8.21 -46.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571394589.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.030 kcal (2) G-P(sol) polarization free energy of solvation -37.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds