Wall clock time and date at job start Tue Mar 31 2020 19:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47568 * 2 1 4 4 C 1.53002 * 109.47338 * 239.99670 * 2 1 3 5 5 N 1.46494 * 109.47172 * 185.00225 * 4 2 1 6 6 C 1.46506 * 120.00031 * 269.99789 * 5 4 2 7 7 C 1.34774 * 120.00371 * 90.00204 * 5 4 2 8 8 O 1.21608 * 119.99810 * 0.21394 * 7 5 4 9 9 C 1.47298 * 120.00338 * 180.21911 * 7 5 4 10 10 C 1.34222 * 124.79306 * 171.09610 * 9 7 5 11 11 C 1.39565 * 115.53340 * 179.97438 * 10 9 7 12 12 C 1.47752 * 129.59547 * 179.97438 * 11 10 9 13 13 C 1.34059 * 119.55831 * 180.02562 * 12 11 10 14 14 N 1.36554 * 121.42291 * 359.96987 * 13 12 11 15 15 H 0.97002 * 119.16032 * 180.02562 * 14 13 12 16 16 C 1.34302 * 121.68182 * 0.04384 * 14 13 12 17 17 O 1.21952 * 119.69821 * 179.97438 * 16 14 13 18 18 C 1.39386 * 112.90121 * 0.02562 * 11 10 9 19 19 S 1.75558 * 124.79210 * 351.05904 * 9 7 5 20 20 N 1.46506 * 109.47248 * 119.99672 * 2 1 3 21 21 C 1.36939 * 119.99765 * 275.00490 * 20 2 1 22 22 H 1.07993 * 120.00054 * 359.97438 * 21 20 2 23 23 C 1.38815 * 119.99490 * 180.02562 * 21 20 2 24 24 N 1.31616 * 120.00291 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99613 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47362 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.47169 * 119.99853 * 25 23 21 28 28 H 1.48495 * 109.47316 * 239.99801 * 25 23 21 29 29 H 1.09006 * 109.47537 * 300.00374 * 1 2 3 30 30 H 1.09005 * 109.47596 * 60.00121 * 1 2 3 31 31 H 1.08998 * 109.47790 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47125 * 65.00082 * 4 2 1 33 33 H 1.09003 * 109.46993 * 304.99947 * 4 2 1 34 34 H 1.09002 * 109.47033 * 263.38433 * 6 5 4 35 35 H 1.08995 * 109.46733 * 23.38483 * 6 5 4 36 36 H 1.08998 * 109.47111 * 143.38266 * 6 5 4 37 37 H 1.08005 * 122.23083 * 359.94161 * 10 9 7 38 38 H 1.08006 * 120.21915 * 359.76346 * 12 11 10 39 39 H 1.07999 * 119.28789 * 180.02562 * 13 12 11 40 40 H 0.96993 * 119.99856 * 94.99180 * 20 2 1 41 41 H 0.96997 * 119.99749 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.3343 0.2339 -1.7612 7 6 4.0757 -1.8987 -0.6114 8 8 3.3832 -2.7808 -0.1412 9 6 5.5437 -2.0021 -0.5481 10 6 6.2166 -2.9314 0.1483 11 6 7.6078 -2.8501 0.0719 12 6 8.6370 -3.7002 0.7052 13 6 9.9343 -3.4372 0.4929 14 7 10.3296 -2.3975 -0.2993 15 1 11.2772 -2.2372 -0.4308 16 6 9.4398 -1.5911 -0.9007 17 8 9.8330 -0.6727 -1.6002 18 6 8.0464 -1.7972 -0.7292 19 16 6.6601 -0.9278 -1.3736 20 7 2.0183 -0.6906 1.1962 21 6 2.1490 -0.0073 2.3758 22 1 1.8924 1.0406 2.4241 23 6 2.6122 -0.6616 3.5091 24 7 2.9254 -1.9386 3.4500 25 14 2.7912 0.2706 5.1180 26 1 2.3772 1.6829 4.9205 27 1 1.9309 -0.3579 6.1525 28 1 4.2082 0.2279 5.5598 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.7517 -0.1585 -2.1369 33 1 1.6054 -1.7199 -1.2950 34 1 4.6398 -0.0470 -2.7691 35 1 3.7654 1.1628 -1.7996 36 1 5.2185 0.3748 -1.1396 37 1 5.7150 -3.6911 0.7295 38 1 8.3462 -4.5254 1.3385 39 1 10.6830 -4.0617 0.9576 40 1 2.2489 -1.6317 1.1527 41 1 3.2487 -2.3957 4.2420 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571394589.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:07 Heat of formation + Delta-G solvation = -20.167528 kcal Electronic energy + Delta-G solvation = -26754.128610 eV Core-core repulsion = 22953.720123 eV Total energy + Delta-G solvation = -3800.408487 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.98312 -41.07110 -38.65899 -37.68030 -36.93095 -36.12988 -33.96500 -32.28239 -30.89422 -30.47761 -28.52988 -27.71114 -25.93151 -25.51234 -24.48679 -22.54899 -21.49840 -20.79559 -19.78805 -19.44954 -18.81322 -18.04537 -17.57670 -17.01679 -16.87022 -16.76419 -16.55845 -16.36689 -15.55727 -15.52585 -15.15809 -14.85931 -14.59337 -14.28348 -13.94645 -13.77001 -13.71445 -13.64968 -13.50209 -13.05607 -12.99628 -12.97810 -12.85444 -12.77086 -12.44413 -12.13499 -11.86932 -11.71123 -11.59056 -11.38646 -11.10604 -10.92497 -10.38596 -10.07921 -9.56996 -8.89871 -8.70261 -7.83702 -5.12580 -0.99989 0.21589 0.45443 0.75286 1.05912 1.43032 1.43979 1.53314 1.82525 2.09460 2.18881 2.51172 2.57669 3.31205 3.45956 3.60341 3.73523 3.89103 3.98033 4.03464 4.15538 4.24700 4.45633 4.51542 4.55873 4.62564 4.67698 4.74955 4.76680 4.89805 4.99317 5.02241 5.11041 5.24715 5.28665 5.42599 5.55532 5.66917 5.77254 5.89742 6.26886 6.36510 6.87075 7.10540 7.43541 8.27785 8.50671 9.37979 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011929 B = 0.004256 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.627334 B = 6577.970919 C = 7876.181625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.142 3.858 3 H 0.051 0.949 4 C 0.115 3.885 5 N -0.598 5.598 6 C 0.056 3.944 7 C 0.580 3.420 8 O -0.547 6.547 9 C -0.224 4.224 10 C -0.078 4.078 11 C -0.003 4.003 12 C -0.196 4.196 13 C 0.132 3.868 14 N -0.603 5.603 15 H 0.434 0.566 16 C 0.564 3.436 17 O -0.584 6.584 18 C -0.337 4.337 19 S 0.290 5.710 20 N -0.740 5.740 21 C -0.234 4.234 22 H 0.071 0.929 23 C -0.077 4.077 24 N -0.959 5.959 25 Si 0.962 3.038 26 H -0.266 1.266 27 H -0.296 1.296 28 H -0.298 1.298 29 H 0.035 0.965 30 H 0.083 0.917 31 H 0.035 0.965 32 H 0.131 0.869 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.120 0.880 36 H 0.063 0.937 37 H 0.142 0.858 38 H 0.172 0.828 39 H 0.227 0.773 40 H 0.385 0.615 41 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.469 -0.790 -12.877 18.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.033 3.967 3 H 0.069 0.931 4 C -0.007 4.007 5 N -0.330 5.330 6 C -0.089 4.089 7 C 0.367 3.633 8 O -0.426 6.426 9 C -0.345 4.345 10 C -0.111 4.111 11 C -0.019 4.019 12 C -0.220 4.220 13 C 0.008 3.992 14 N -0.240 5.240 15 H 0.275 0.725 16 C 0.360 3.640 17 O -0.469 6.469 18 C -0.456 4.456 19 S 0.562 5.438 20 N -0.384 5.384 21 C -0.367 4.367 22 H 0.089 0.911 23 C -0.269 4.269 24 N -0.610 5.610 25 Si 0.792 3.208 26 H -0.191 1.191 27 H -0.223 1.223 28 H -0.225 1.225 29 H 0.054 0.946 30 H 0.102 0.898 31 H 0.054 0.946 32 H 0.149 0.851 33 H 0.084 0.916 34 H 0.112 0.888 35 H 0.139 0.861 36 H 0.081 0.919 37 H 0.160 0.840 38 H 0.189 0.811 39 H 0.243 0.757 40 H 0.221 0.779 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 12.992 0.725 -13.939 19.069 hybrid contribution 0.332 -1.272 2.411 2.746 sum 13.324 -0.547 -11.528 17.628 Atomic orbital electron populations 1.22243 0.97166 1.00665 1.01297 1.21019 0.93333 0.95663 0.86715 0.93118 1.21986 0.77731 1.02054 0.98970 1.47531 1.07849 1.20193 1.57379 1.22287 0.94872 0.92435 0.99283 1.17343 0.85666 0.82630 0.77678 1.90780 1.63676 1.41486 1.46637 1.24381 0.97787 1.04102 1.08196 1.20165 0.92765 0.99503 0.98705 1.19544 0.92741 0.94370 0.95287 1.21769 0.90019 1.03533 1.06666 1.22243 0.97480 0.88656 0.90816 1.42976 1.11682 1.26869 1.42445 0.72529 1.15827 0.85401 0.82351 0.80452 1.90927 1.81167 1.32944 1.41896 1.25176 1.00185 1.06800 1.13441 1.84122 0.88379 1.25529 1.45798 1.43002 1.78058 1.11426 1.05933 1.19619 1.34482 0.93895 0.88683 0.91077 1.25492 1.03573 0.96786 1.01057 1.69936 1.52487 1.10021 1.28522 0.85234 0.76552 0.78311 0.80699 1.19060 1.22339 1.22525 0.94615 0.89842 0.94556 0.85095 0.91635 0.88761 0.86143 0.91946 0.84027 0.81059 0.75693 0.77923 0.94630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.28 9.49 71.98 0.68 -4.60 16 2 C 0.14 5.51 3.20 44.99 0.14 5.65 16 3 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 4 C 0.12 3.63 5.11 86.38 0.44 4.07 16 5 N -0.60 -19.91 2.77 -850.83 -2.36 -22.27 16 6 C 0.06 1.32 8.90 127.77 1.14 2.45 16 7 C 0.58 23.89 6.94 86.63 0.60 24.50 16 8 O -0.55 -27.45 14.10 -4.06 -0.06 -27.51 16 9 C -0.22 -8.16 6.15 23.74 0.15 -8.01 16 10 C -0.08 -2.79 9.82 21.67 0.21 -2.58 16 11 C 0.00 -0.10 6.08 -20.17 -0.12 -0.22 16 12 C -0.20 -3.74 10.29 23.84 0.25 -3.49 16 13 C 0.13 1.55 11.11 83.01 0.92 2.47 16 14 N -0.60 -9.95 5.23 -319.28 -1.67 -11.62 16 15 H 0.43 4.30 8.87 -92.71 -0.82 3.47 16 16 C 0.56 15.51 7.71 85.22 0.66 16.17 16 17 O -0.58 -19.51 17.89 -5.16 -0.09 -19.60 16 18 C -0.34 -10.14 6.48 23.45 0.15 -9.99 16 19 S 0.29 8.45 17.97 -56.49 -1.02 7.44 16 20 N -0.74 -39.03 4.52 -322.94 -1.46 -40.49 16 21 C -0.23 -13.50 9.93 84.03 0.83 -12.67 16 22 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 23 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 24 N -0.96 -62.04 13.06 21.65 0.28 -61.76 16 25 Si 0.96 48.14 29.55 68.60 2.03 50.17 16 26 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 27 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 28 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 29 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 31 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.13 2.69 8.07 -2.39 -0.02 2.67 16 33 H 0.07 2.34 7.42 -2.39 -0.02 2.32 16 34 H 0.09 1.67 7.74 -2.39 -0.02 1.65 16 35 H 0.12 2.19 8.02 -2.39 -0.02 2.17 16 36 H 0.06 1.68 4.61 -20.85 -0.10 1.58 16 37 H 0.14 5.45 8.00 -2.91 -0.02 5.43 16 38 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 39 H 0.23 -0.03 8.06 -2.91 -0.02 -0.05 16 40 H 0.38 22.57 5.02 -92.71 -0.47 22.11 16 41 H 0.24 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -89.09 355.65 1.90 -87.19 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: -0.28 Total: 28.82 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 6.52 Total: 9.62 kcal Atomic # 7 Polarization: -130.92 SS G_CDS: -5.21 Total: -136.13 kcal Atomic # 8 Polarization: -46.96 SS G_CDS: -0.15 Total: -47.11 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.17 kcal Atomic # 16 Polarization: 8.45 SS G_CDS: -1.02 Total: 7.44 kcal Total: -89.09 1.90 -87.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571394589.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.025 kcal (2) G-P(sol) polarization free energy of solvation -89.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds