Wall clock time and date at job start Tue Mar 31 2020 19:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47252 * 2 1 4 4 C 1.50701 * 109.47049 * 120.00370 * 2 1 3 5 5 H 1.08001 * 119.99962 * 119.99783 * 4 2 1 6 6 C 1.37878 * 119.99574 * 299.99420 * 4 2 1 7 7 N 1.31516 * 120.00406 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99591 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47160 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46912 * 120.00331 * 8 6 4 11 11 H 1.48503 * 109.47183 * 240.00066 * 8 6 4 12 12 N 1.46499 * 109.46630 * 240.00098 * 2 1 3 13 13 C 1.34775 * 120.00242 * 85.00594 * 12 2 1 14 14 O 1.21283 * 119.99779 * 359.97438 * 13 12 2 15 15 C 1.50700 * 120.00217 * 179.97438 * 13 12 2 16 16 N 1.46503 * 109.46995 * 179.97438 * 15 13 12 17 17 C 1.35994 * 119.79930 * 270.02263 * 16 15 13 18 18 C 1.36658 * 119.12460 * 179.74045 * 17 16 15 19 19 C 1.48420 * 120.62459 * 180.25082 * 18 17 16 20 20 N 1.34059 * 126.67245 * 359.94643 * 19 18 17 21 21 N 1.28988 * 107.26377 * 179.83562 * 20 19 18 22 22 N 1.28728 * 108.94938 * 0.43278 * 21 20 19 23 23 H 0.96994 * 125.33658 * 179.73196 * 22 21 20 24 24 N 1.28874 * 109.31841 * 359.72074 * 22 21 20 25 25 C 1.41682 * 118.75796 * 0.50431 * 18 17 16 26 26 O 1.35104 * 120.23663 * 179.74947 * 25 18 17 27 27 N 1.32293 * 119.52912 * 359.46845 * 25 18 17 28 28 C 1.33291 * 120.85235 * 0.28167 * 27 25 18 29 29 O 1.21964 * 119.33441 * 180.02562 * 28 27 25 30 30 H 1.09005 * 109.47258 * 60.00130 * 1 2 3 31 31 H 1.09001 * 109.47252 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47262 * 300.00024 * 1 2 3 33 33 H 0.96999 * 119.99774 * 179.97438 * 7 6 4 34 34 H 0.96998 * 120.00107 * 264.99317 * 12 2 1 35 35 H 1.09000 * 109.46747 * 59.99863 * 15 13 12 36 36 H 1.08994 * 109.47091 * 299.99342 * 15 13 12 37 37 H 1.08008 * 120.43557 * 0.02562 * 17 16 15 38 38 H 0.96700 * 114.00264 * 179.72514 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8297 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.1484 -2.2858 3.6037 10 1 3.1473 -0.1859 4.8160 11 1 1.1678 -1.5867 4.8165 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0183 -2.3572 14 8 1.8583 1.1584 -2.4117 15 6 2.6498 -0.7285 -3.5875 16 7 2.6985 0.2127 -4.7091 17 6 1.6126 0.3615 -5.5141 18 6 1.6712 1.2473 -6.5531 19 6 0.5038 1.4402 -7.4491 20 7 -0.6800 0.8163 -7.3672 21 7 -1.4173 1.2671 -8.3248 22 7 -0.7437 2.1321 -8.9993 23 1 -1.0692 2.6162 -9.7742 24 7 0.4310 2.2541 -8.4835 25 6 2.8692 1.9741 -6.7624 26 8 2.9617 2.8538 -7.7836 27 7 3.8948 1.7894 -5.9474 28 6 3.8170 0.9247 -4.9360 29 8 4.7792 0.7766 -4.2012 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 0.7083 1.1608 3.4844 34 1 2.2490 -1.6317 -1.1527 35 1 1.9775 -1.5508 -3.8325 36 1 3.6491 -1.1203 -3.3980 37 1 0.7140 -0.2094 -5.3319 38 1 3.8166 3.3023 -7.8403 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589787676.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:32 Heat of formation + Delta-G solvation = 69.987699 kcal Electronic energy + Delta-G solvation = -28240.903414 eV Core-core repulsion = 23930.403888 eV Total energy + Delta-G solvation = -4310.499527 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.117 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.66392 -42.03262 -39.34399 -38.54220 -36.97371 -35.16596 -34.68676 -34.48750 -33.77086 -32.51269 -31.08722 -29.63921 -27.67464 -25.57662 -25.29645 -24.92295 -24.09095 -22.71468 -21.32424 -20.08361 -19.70419 -19.42757 -18.33320 -17.83702 -17.46423 -17.30142 -16.31602 -16.04767 -15.65333 -15.42228 -15.09712 -14.70692 -14.43732 -14.25658 -14.25435 -13.98981 -13.71671 -13.18792 -12.60171 -12.52926 -12.47642 -12.32786 -11.73021 -11.57782 -11.33429 -11.18969 -11.13492 -11.01320 -10.98109 -10.81947 -10.36561 -10.31702 -10.28582 -10.07745 -9.36335 -9.10862 -8.62974 -8.57847 -8.07400 -6.16375 -4.26054 0.31621 0.80560 1.08640 1.88184 2.16690 2.23843 2.86066 3.06704 3.22487 3.30459 3.32882 3.35556 3.54077 3.84448 3.90832 3.97846 4.32437 4.35974 4.66891 4.83487 5.01945 5.08005 5.12515 5.17008 5.26021 5.32591 5.72360 6.05858 6.14439 6.74276 6.83198 6.86041 7.06077 7.30424 7.43659 7.57622 7.62737 7.83467 7.91645 7.98449 8.08313 8.47689 8.68264 8.92338 9.41296 10.89687 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.018635 B = 0.002694 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.151765 B =10392.772014 C =11354.527761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.265 3.735 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.063 0.937 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.699 5.699 13 C 0.489 3.511 14 O -0.542 6.542 15 C 0.067 3.933 16 N -0.497 5.497 17 C 0.272 3.728 18 C -0.190 4.190 19 C 0.246 3.754 20 N -0.275 5.275 21 N -0.048 5.048 22 N -0.230 5.230 23 H 0.475 0.525 24 N -0.274 5.274 25 C 0.484 3.516 26 O -0.428 6.428 27 N -0.605 5.605 28 C 0.661 3.339 29 O -0.513 6.513 30 H 0.014 0.986 31 H 0.028 0.972 32 H 0.091 0.909 33 H 0.264 0.736 34 H 0.392 0.608 35 H 0.126 0.874 36 H 0.135 0.865 37 H 0.195 0.805 38 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.525 -1.750 -24.690 24.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.067 0.933 4 C -0.573 4.573 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.347 5.347 13 C 0.271 3.729 14 O -0.420 6.420 15 C -0.059 4.059 16 N -0.209 5.209 17 C 0.129 3.871 18 C -0.203 4.203 19 C -0.035 4.035 20 N -0.149 5.149 21 N -0.044 5.044 22 N -0.076 5.076 23 H 0.329 0.671 24 N -0.125 5.125 25 C 0.280 3.720 26 O -0.221 6.221 27 N -0.361 5.361 28 C 0.363 3.637 29 O -0.385 6.385 30 H 0.033 0.967 31 H 0.047 0.953 32 H 0.110 0.890 33 H 0.074 0.926 34 H 0.224 0.776 35 H 0.143 0.857 36 H 0.153 0.847 37 H 0.212 0.788 38 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -2.463 -0.779 -24.329 24.465 hybrid contribution 0.380 -0.505 0.651 0.907 sum -2.083 -1.284 -23.678 23.804 Atomic orbital electron populations 1.22081 0.98186 0.99233 1.01025 1.18821 0.91115 0.94071 0.79655 0.93274 1.21228 1.32574 1.13337 0.90174 0.91856 1.24895 0.94751 0.94934 0.99142 1.69908 1.35797 1.22421 1.23895 0.86368 0.78600 0.79532 0.82453 1.19668 1.20847 1.20849 1.46467 1.64418 1.13701 1.10078 1.20320 0.79622 0.87947 0.85004 1.90731 1.50968 1.15548 1.84775 1.22126 1.07209 0.91395 0.85183 1.46106 1.13063 1.36569 1.25207 1.22387 0.90798 0.89836 0.84029 1.16140 0.91932 1.09377 1.02885 1.22625 0.93357 0.93734 0.93775 1.76068 1.01482 1.22313 1.15054 1.78882 1.20862 1.03125 1.01483 1.47779 1.06800 1.28356 1.24663 0.67057 1.75134 1.03086 1.22869 1.11461 1.20079 0.87202 0.81952 0.82758 1.85119 1.42187 1.51296 1.43510 1.69752 1.28548 1.27002 1.10838 1.17323 0.82280 0.79794 0.84327 1.91043 1.34863 1.66061 1.46537 0.96673 0.95273 0.89023 0.92552 0.77550 0.85656 0.84738 0.78821 0.72768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.26 37.16 0.34 -3.16 16 2 C 0.26 6.54 2.56 -69.08 -0.18 6.36 16 3 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 4 C -0.53 -13.88 8.73 -34.44 -0.30 -14.18 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.69 11.32 55.43 0.63 -24.06 16 8 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 9 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.70 -13.47 5.07 -54.93 -0.28 -13.75 16 13 C 0.49 9.00 7.86 -10.99 -0.09 8.91 16 14 O -0.54 -12.54 16.09 5.56 0.09 -12.45 16 15 C 0.07 0.83 5.82 -5.19 -0.03 0.80 16 16 N -0.50 -6.73 2.08 -122.90 -0.26 -6.99 16 17 C 0.27 2.96 10.06 -16.28 -0.16 2.80 16 18 C -0.19 -2.16 5.87 -104.96 -0.62 -2.78 16 19 C 0.25 2.70 7.93 -156.30 -1.24 1.46 16 20 N -0.28 -3.07 12.25 32.15 0.39 -2.67 16 21 N -0.05 -0.46 13.47 60.35 0.81 0.36 16 22 N -0.23 -1.57 7.90 60.35 0.48 -1.10 16 23 H 0.48 0.92 8.96 -340.37 -3.05 -2.13 16 24 N -0.27 -2.62 11.04 32.17 0.36 -2.26 16 25 C 0.48 5.72 7.92 -16.04 -0.13 5.59 16 26 O -0.43 -3.75 12.05 -17.02 -0.20 -3.96 16 27 N -0.60 -9.04 10.39 -16.52 -0.17 -9.21 16 28 C 0.66 11.20 8.33 -88.47 -0.74 10.46 16 29 O -0.51 -10.57 16.70 4.95 0.08 -10.49 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 33 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.39 6.18 8.54 -40.82 -0.35 5.84 16 35 H 0.13 0.88 8.03 -51.93 -0.42 0.47 16 36 H 0.13 1.60 7.37 -51.93 -0.38 1.21 16 37 H 0.19 1.51 7.90 -52.48 -0.41 1.10 16 38 H 0.42 2.01 8.98 45.56 0.41 2.42 16 LS Contribution 344.60 15.07 5.19 5.19 Total: -1.00 -39.19 344.60 -6.43 -45.61 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -5.30 Total: 2.37 kcal Atomic # 6 Polarization: 21.17 SS G_CDS: -3.23 Total: 17.95 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: 1.96 Total: -59.69 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.03 Total: -26.89 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -39.19 -6.43 -45.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589787676.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.602 kcal (2) G-P(sol) polarization free energy of solvation -39.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds