Wall clock time and date at job start Tue Mar 31 2020 19:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47252 * 2 1 4 4 C 1.50701 * 109.47049 * 120.00370 * 2 1 3 5 5 H 1.08001 * 119.99962 * 119.99783 * 4 2 1 6 6 C 1.37878 * 119.99574 * 299.99420 * 4 2 1 7 7 N 1.31516 * 120.00406 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99591 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47160 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46912 * 120.00331 * 8 6 4 11 11 H 1.48503 * 109.47183 * 240.00066 * 8 6 4 12 12 N 1.46499 * 109.46630 * 240.00098 * 2 1 3 13 13 C 1.34775 * 120.00242 * 85.00594 * 12 2 1 14 14 O 1.21283 * 119.99779 * 359.97438 * 13 12 2 15 15 C 1.50700 * 120.00217 * 179.97438 * 13 12 2 16 16 N 1.46503 * 109.46995 * 179.97438 * 15 13 12 17 17 C 1.35994 * 119.79930 * 270.02263 * 16 15 13 18 18 C 1.36658 * 119.12460 * 179.74045 * 17 16 15 19 19 C 1.48420 * 120.62459 * 180.25082 * 18 17 16 20 20 N 1.34059 * 126.67245 * 359.94643 * 19 18 17 21 21 N 1.28988 * 107.26377 * 179.83562 * 20 19 18 22 22 N 1.28728 * 108.94938 * 0.43278 * 21 20 19 23 23 H 0.96994 * 125.33658 * 179.73196 * 22 21 20 24 24 N 1.28874 * 109.31841 * 359.72074 * 22 21 20 25 25 C 1.41682 * 118.75796 * 0.50431 * 18 17 16 26 26 O 1.35104 * 120.23663 * 179.74947 * 25 18 17 27 27 N 1.32293 * 119.52912 * 359.46845 * 25 18 17 28 28 C 1.33291 * 120.85235 * 0.28167 * 27 25 18 29 29 O 1.21964 * 119.33441 * 180.02562 * 28 27 25 30 30 H 1.09005 * 109.47258 * 60.00130 * 1 2 3 31 31 H 1.09001 * 109.47252 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47262 * 300.00024 * 1 2 3 33 33 H 0.96999 * 119.99774 * 179.97438 * 7 6 4 34 34 H 0.96998 * 120.00107 * 264.99317 * 12 2 1 35 35 H 1.09000 * 109.46747 * 59.99863 * 15 13 12 36 36 H 1.08994 * 109.47091 * 299.99342 * 15 13 12 37 37 H 1.08008 * 120.43557 * 0.02562 * 17 16 15 38 38 H 0.96700 * 114.00264 * 179.72514 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8297 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.1484 -2.2858 3.6037 10 1 3.1473 -0.1859 4.8160 11 1 1.1678 -1.5867 4.8165 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0183 -2.3572 14 8 1.8583 1.1584 -2.4117 15 6 2.6498 -0.7285 -3.5875 16 7 2.6985 0.2127 -4.7091 17 6 1.6126 0.3615 -5.5141 18 6 1.6712 1.2473 -6.5531 19 6 0.5038 1.4402 -7.4491 20 7 -0.6800 0.8163 -7.3672 21 7 -1.4173 1.2671 -8.3248 22 7 -0.7437 2.1321 -8.9993 23 1 -1.0692 2.6162 -9.7742 24 7 0.4310 2.2541 -8.4835 25 6 2.8692 1.9741 -6.7624 26 8 2.9617 2.8538 -7.7836 27 7 3.8948 1.7894 -5.9474 28 6 3.8170 0.9247 -4.9360 29 8 4.7792 0.7766 -4.2012 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 0.7083 1.1608 3.4844 34 1 2.2490 -1.6317 -1.1527 35 1 1.9775 -1.5508 -3.8325 36 1 3.6491 -1.1203 -3.3980 37 1 0.7140 -0.2094 -5.3319 38 1 3.8166 3.3023 -7.8403 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589787676.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:31 Heat of formation + Delta-G solvation = 33.022743 kcal Electronic energy + Delta-G solvation = -28242.506335 eV Core-core repulsion = 23930.403888 eV Total energy + Delta-G solvation = -4312.102447 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.117 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.40094 -43.09154 -40.64475 -39.70634 -38.10470 -36.80100 -35.77084 -35.38786 -34.60501 -34.37396 -32.07925 -31.24767 -28.96468 -27.32865 -26.47768 -25.80004 -24.96089 -23.82917 -22.85793 -21.34862 -20.98971 -20.20151 -19.42229 -19.16958 -18.45663 -18.11501 -17.85286 -17.19603 -17.03574 -16.95318 -16.35409 -16.08207 -15.70292 -15.31373 -15.12410 -15.04820 -14.76439 -14.73692 -14.39212 -13.84918 -13.48159 -13.37504 -13.28463 -12.99949 -12.83665 -12.72427 -12.35863 -12.26615 -12.19784 -12.12490 -12.10006 -12.06097 -11.32135 -11.19173 -11.09440 -10.85921 -10.60716 -9.81439 -9.64531 -8.17939 -6.35143 -0.57730 -0.06614 0.26296 0.98488 1.33813 1.44442 1.46353 1.52454 1.57759 1.65208 2.01979 2.28473 2.44881 2.55368 2.69022 2.96931 3.10707 3.13207 3.49311 3.80558 3.84294 4.02693 4.18914 4.20070 4.31280 4.54833 4.76485 4.82965 4.93906 5.04385 5.10198 5.43345 5.58459 5.68554 5.68654 5.89578 6.10246 6.10518 6.49221 6.72916 6.84061 6.89028 7.17170 7.31111 7.47706 8.88420 Molecular weight = 335.12amu Principal moments of inertia in cm(-1) A = 0.018635 B = 0.002694 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.151765 B =10392.772014 C =11354.527761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.271 3.729 3 H -0.009 1.009 4 C -0.545 4.545 5 H 0.077 0.923 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.971 3.029 9 H -0.258 1.258 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.694 5.694 13 C 0.484 3.516 14 O -0.595 6.595 15 C 0.080 3.920 16 N -0.500 5.500 17 C 0.276 3.724 18 C -0.191 4.191 19 C 0.235 3.765 20 N -0.291 5.291 21 N -0.054 5.054 22 N -0.201 5.201 23 H 0.494 0.506 24 N -0.276 5.276 25 C 0.493 3.507 26 O -0.417 6.417 27 N -0.632 5.632 28 C 0.654 3.346 29 O -0.568 6.568 30 H 0.015 0.985 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.265 0.735 34 H 0.412 0.588 35 H 0.192 0.808 36 H 0.143 0.857 37 H 0.229 0.771 38 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.286 -3.638 -26.387 26.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.168 3.832 3 H 0.009 0.991 4 C -0.583 4.583 5 H 0.095 0.905 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.796 3.204 9 H -0.181 1.181 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.343 5.343 13 C 0.270 3.730 14 O -0.477 6.477 15 C -0.045 4.045 16 N -0.211 5.211 17 C 0.136 3.864 18 C -0.204 4.204 19 C -0.046 4.046 20 N -0.164 5.164 21 N -0.048 5.048 22 N -0.052 5.052 23 H 0.354 0.646 24 N -0.129 5.129 25 C 0.291 3.709 26 O -0.212 6.212 27 N -0.391 5.391 28 C 0.356 3.644 29 O -0.445 6.445 30 H 0.034 0.966 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.248 0.752 35 H 0.209 0.791 36 H 0.161 0.839 37 H 0.245 0.755 38 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -3.264 -2.690 -26.124 26.464 hybrid contribution 0.532 0.236 0.962 1.125 sum -2.732 -2.454 -25.162 25.428 Atomic orbital electron populations 1.21868 0.97640 0.99914 0.99627 1.18353 0.91495 0.91600 0.81801 0.99096 1.21602 1.32436 1.13582 0.90704 0.90513 1.25805 0.94922 0.95588 1.02414 1.70065 1.37118 1.24006 1.24501 0.85304 0.78102 0.78526 0.78447 1.18139 1.21448 1.20266 1.46133 1.64528 1.14547 1.09133 1.21313 0.78081 0.87433 0.86193 1.90708 1.53014 1.18146 1.85804 1.22254 1.08919 0.91454 0.81916 1.45961 1.12978 1.36544 1.25658 1.22915 0.90701 0.89738 0.83072 1.16280 0.91937 1.09059 1.03074 1.22532 0.93332 0.94494 0.94273 1.76046 1.01559 1.22985 1.15835 1.78837 1.20830 1.03621 1.01557 1.47833 1.05749 1.27218 1.24435 0.64648 1.75089 1.04009 1.22591 1.11215 1.20177 0.86688 0.81704 0.82355 1.85117 1.43584 1.50477 1.42045 1.69652 1.30148 1.27715 1.11570 1.17531 0.82569 0.80034 0.84278 1.90988 1.36929 1.68072 1.48523 0.96564 0.93315 0.91891 0.92632 0.75185 0.79127 0.83894 0.75457 0.70719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.36 9.26 71.98 0.67 -5.70 16 2 C 0.27 13.65 2.56 44.25 0.11 13.77 16 3 H -0.01 -0.55 7.58 -2.39 -0.02 -0.57 16 4 C -0.55 -28.26 8.73 25.60 0.22 -28.04 16 5 H 0.08 3.68 7.74 -2.91 -0.02 3.66 16 6 C 0.01 0.67 5.30 84.65 0.45 1.12 16 7 N -0.92 -52.68 11.32 21.45 0.24 -52.44 16 8 Si 0.97 41.84 29.54 68.60 2.03 43.87 16 9 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 10 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 12 N -0.69 -26.28 5.07 -446.09 -2.26 -28.54 16 13 C 0.48 17.57 7.86 87.66 0.69 18.25 16 14 O -0.60 -28.18 16.09 -3.04 -0.05 -28.23 16 15 C 0.08 1.78 5.82 85.63 0.50 2.28 16 16 N -0.50 -12.87 2.08 -660.99 -1.37 -14.24 16 17 C 0.28 5.42 10.06 83.68 0.84 6.26 16 18 C -0.19 -4.01 5.87 -20.08 -0.12 -4.13 16 19 C 0.23 4.65 7.93 137.36 1.09 5.74 16 20 N -0.29 -5.82 12.25 -52.20 -0.64 -6.46 16 21 N -0.05 -0.89 13.47 37.02 0.50 -0.39 16 22 N -0.20 -2.24 7.90 37.02 0.29 -1.94 16 23 H 0.49 0.54 8.96 -347.54 -3.12 -2.57 16 24 N -0.28 -4.62 11.04 -52.15 -0.58 -5.20 16 25 C 0.49 11.13 7.92 85.47 0.68 11.81 16 26 O -0.42 -6.64 12.05 -83.80 -1.01 -7.65 16 27 N -0.63 -18.92 10.39 -438.28 -4.55 -23.48 16 28 C 0.65 22.29 8.33 179.60 1.50 23.79 16 29 O -0.57 -24.16 16.70 -5.20 -0.09 -24.24 16 30 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.06 3.42 6.07 -2.39 -0.01 3.40 16 33 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 34 H 0.41 12.15 8.54 -92.71 -0.79 11.36 16 35 H 0.19 1.73 8.03 -2.39 -0.02 1.71 16 36 H 0.14 3.11 7.37 -2.39 -0.02 3.09 16 37 H 0.23 2.75 7.90 -2.91 -0.02 2.73 16 38 H 0.43 3.56 8.98 -74.06 -0.66 2.90 16 Total: -1.00 -89.95 344.60 -4.24 -94.19 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -3.38 Total: 9.60 kcal Atomic # 6 Polarization: 38.53 SS G_CDS: 6.62 Total: 45.15 kcal Atomic # 7 Polarization: -124.32 SS G_CDS: -8.37 Total: -132.69 kcal Atomic # 8 Polarization: -58.98 SS G_CDS: -1.15 Total: -60.12 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -89.95 -4.24 -94.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589787676.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.208 kcal (2) G-P(sol) polarization free energy of solvation -89.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds