Wall clock time and date at job start Tue Mar 31 2020 19:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47027 * 2 1 4 4 C 1.50701 * 109.47093 * 239.99796 * 2 1 3 5 5 N 1.28018 * 119.99685 * 119.99900 * 4 2 1 6 6 N 1.40101 * 119.99772 * 180.02562 * 5 4 2 7 7 C 1.39047 * 119.99976 * 180.02562 * 6 5 4 8 8 C 1.38932 * 119.64578 * 179.97438 * 7 6 5 9 9 C 1.39430 * 118.98774 * 179.97438 * 8 7 6 10 10 C 1.48476 * 120.85101 * 180.02562 * 9 8 7 11 11 N 1.34041 * 126.67126 * 359.66427 * 10 9 8 12 12 N 1.28992 * 107.26740 * 179.83669 * 11 10 9 13 13 N 1.28731 * 108.93774 * 0.43413 * 12 11 10 14 14 H 0.97001 * 125.33886 * 179.70336 * 13 12 11 15 15 N 1.28872 * 109.32159 * 359.72130 * 13 12 11 16 16 C 1.39869 * 118.29691 * 0.02562 * 9 8 7 17 17 C 1.38030 * 119.18897 * 359.97438 * 16 9 8 18 18 Cl 1.73599 * 119.52824 * 179.97438 * 17 16 9 19 19 N 1.32076 * 120.93891 * 0.26255 * 17 16 9 20 20 C 1.53004 * 109.47350 * 119.99944 * 2 1 3 21 21 C 1.50699 * 109.47048 * 295.00166 * 20 2 1 22 22 H 1.08000 * 119.99971 * 359.97438 * 21 20 2 23 23 C 1.37875 * 119.99826 * 179.97438 * 21 20 2 24 24 N 1.31514 * 120.00319 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99961 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46721 * 89.99908 * 25 23 21 27 27 H 1.48488 * 109.47004 * 209.99981 * 25 23 21 28 28 H 1.48503 * 109.46870 * 330.00223 * 25 23 21 29 29 H 1.08998 * 109.47196 * 300.00045 * 1 2 3 30 30 H 1.09000 * 109.47265 * 60.00084 * 1 2 3 31 31 H 1.09003 * 109.46961 * 179.97438 * 1 2 3 32 32 H 1.08001 * 120.00350 * 300.00352 * 4 2 1 33 33 H 0.97000 * 120.00435 * 359.97438 * 6 5 4 34 34 H 1.08004 * 120.50537 * 0.02562 * 8 7 6 35 35 H 1.08000 * 120.40726 * 180.02562 * 16 9 8 36 36 H 1.09007 * 109.46679 * 55.00026 * 20 2 1 37 37 H 1.08997 * 109.46919 * 174.99833 * 20 2 1 38 38 H 0.96995 * 119.99975 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 7 2.7683 -0.0883 -2.0731 6 7 3.2349 -0.7486 -3.2173 7 6 4.0347 -0.0730 -4.1323 8 6 4.4937 -0.7351 -5.2642 9 6 5.2944 -0.0443 -6.1729 10 6 5.8071 -0.7113 -7.3964 11 7 5.5913 -1.9816 -7.7658 12 7 6.2048 -2.1641 -8.8857 13 7 6.7963 -1.0710 -9.2211 14 1 7.3306 -0.9447 -10.0208 15 7 6.5677 -0.1710 -8.3275 16 6 5.6022 1.2930 -5.9025 17 6 5.1068 1.8790 -4.7552 18 17 5.4839 3.5382 -4.4105 19 7 4.3546 1.1939 -3.9130 20 6 2.0401 -0.7212 1.2493 21 6 1.6414 0.0570 2.4766 22 1 1.0807 0.9746 2.3757 23 6 1.9924 -0.4022 3.7283 24 7 2.6748 -1.5198 3.8512 25 14 1.4989 0.5629 5.2497 26 1 0.1712 0.0955 5.7231 27 1 2.5079 0.3521 6.3185 28 1 1.4250 2.0082 4.9166 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7714 -1.7444 -1.4014 33 1 3.0006 -1.6773 -3.3708 34 1 4.2336 -1.7689 -5.4379 35 1 6.2193 1.8604 -6.5834 36 1 1.6054 -1.7198 1.2951 37 1 3.1263 -0.7994 1.2055 38 1 2.9220 -1.8426 4.7318 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589787698.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:41 Heat of formation + Delta-G solvation = 191.863580 kcal Electronic energy + Delta-G solvation = -24115.834128 eV Core-core repulsion = 20251.328700 eV Total energy + Delta-G solvation = -3864.505427 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.096 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.94447 -40.51481 -37.52408 -36.76069 -35.40877 -34.87555 -34.26515 -32.76307 -31.88748 -31.56895 -28.86945 -26.94918 -25.65517 -25.15943 -24.10517 -23.37103 -22.37089 -21.31380 -19.70787 -19.25193 -17.99670 -17.61793 -17.45194 -16.51157 -16.19204 -15.84503 -15.15745 -15.04255 -14.80533 -14.48458 -14.31985 -13.36523 -13.19252 -13.10987 -12.84641 -12.47270 -12.40736 -12.22955 -11.81748 -11.75424 -11.59783 -11.39027 -11.33743 -11.09390 -10.88258 -10.76554 -10.41953 -10.11735 -9.95758 -9.81812 -9.65131 -9.58891 -9.24163 -9.07011 -8.35445 -7.79655 -6.00205 -4.01900 0.20670 0.72541 0.81343 1.57407 1.76876 1.95209 2.55707 2.61625 3.13533 3.33620 3.40413 3.44081 3.56812 3.71776 4.32802 4.47578 4.58655 4.63578 4.77532 4.92257 5.06456 5.24363 5.32021 5.36431 5.55959 5.76227 5.88881 5.92261 6.00136 6.12796 6.27913 6.47858 6.84475 6.90088 6.98815 7.03286 7.60714 7.63867 7.65327 7.75369 7.98131 8.38354 8.50120 9.03440 9.61827 11.11228 Molecular weight = 335.10amu Principal moments of inertia in cm(-1) A = 0.016660 B = 0.002098 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.302284 B =13340.118004 C =14289.015788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.039 4.039 3 H 0.080 0.920 4 C 0.101 3.899 5 N -0.245 5.245 6 N -0.573 5.573 7 C 0.451 3.549 8 C -0.193 4.193 9 C 0.079 3.921 10 C 0.219 3.781 11 N -0.258 5.258 12 N -0.046 5.046 13 N -0.224 5.224 14 H 0.478 0.522 15 N -0.279 5.279 16 C -0.183 4.183 17 C 0.227 3.773 18 Cl -0.022 7.022 19 N -0.489 5.489 20 C 0.034 3.966 21 C -0.514 4.514 22 H 0.060 0.940 23 C 0.057 3.943 24 N -0.896 5.896 25 Si 0.892 3.108 26 H -0.281 1.281 27 H -0.287 1.287 28 H -0.273 1.273 29 H 0.073 0.927 30 H 0.035 0.965 31 H 0.049 0.951 32 H 0.100 0.900 33 H 0.394 0.606 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.020 0.980 37 H 0.018 0.982 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.982 1.595 -27.615 28.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.060 4.060 3 H 0.098 0.902 4 C -0.114 4.114 5 N -0.046 5.046 6 N -0.295 5.295 7 C 0.215 3.785 8 C -0.221 4.221 9 C 0.068 3.932 10 C -0.061 4.061 11 N -0.131 5.131 12 N -0.041 5.041 13 N -0.071 5.071 14 H 0.332 0.668 15 N -0.131 5.131 16 C -0.209 4.209 17 C 0.061 3.939 18 Cl 0.006 6.994 19 N -0.207 5.207 20 C -0.005 4.005 21 C -0.553 4.553 22 H 0.078 0.922 23 C -0.145 4.145 24 N -0.535 5.535 25 Si 0.720 3.280 26 H -0.207 1.207 27 H -0.213 1.213 28 H -0.198 1.198 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.117 0.883 33 H 0.235 0.765 34 H 0.170 0.830 35 H 0.169 0.831 36 H 0.039 0.961 37 H 0.037 0.963 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.298 2.394 -27.324 28.383 hybrid contribution 0.085 -0.720 -0.015 0.725 sum 7.383 1.674 -27.339 28.368 Atomic orbital electron populations 1.21672 0.94443 1.01359 1.01110 1.20352 0.95366 1.00138 0.90130 0.90154 1.26704 0.92369 0.97845 0.94523 1.74598 1.11757 1.23838 0.94439 1.45599 1.51687 1.12078 1.20102 1.17348 0.88051 0.87009 0.86106 1.21272 1.03583 1.02436 0.94822 1.16830 0.95709 0.91904 0.88770 1.23312 0.97607 0.89096 0.96133 1.76130 1.17821 1.14736 1.04437 1.78971 1.06380 1.10000 1.08725 1.47775 1.34566 1.04964 1.19750 0.66761 1.74957 1.18378 1.18934 1.00873 1.21431 1.05918 0.94393 0.99109 1.21038 0.94082 0.88536 0.90293 1.98422 1.91933 1.13678 1.95335 1.66460 1.15808 1.07097 1.31371 1.19123 0.96501 0.95512 0.89316 1.21166 1.35044 1.08428 0.90627 0.92220 1.25008 0.95195 0.95096 0.99159 1.69958 1.38817 1.21197 1.23521 0.86592 0.78156 0.80497 0.82769 1.20708 1.21331 1.19778 0.90794 0.94610 0.93209 0.88280 0.76516 0.83002 0.83068 0.96147 0.96329 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.99 37.16 0.33 -1.87 16 2 C -0.04 -0.76 2.75 -91.77 -0.25 -1.01 16 3 H 0.08 1.68 8.11 -51.93 -0.42 1.26 16 4 C 0.10 1.71 9.66 -13.87 -0.13 1.58 16 5 N -0.24 -4.30 10.96 32.67 0.36 -3.94 16 6 N -0.57 -8.15 6.41 31.11 0.20 -7.95 16 7 C 0.45 6.28 7.59 -154.97 -1.18 5.11 16 8 C -0.19 -2.13 9.62 -38.88 -0.37 -2.50 16 9 C 0.08 0.84 5.91 -104.62 -0.62 0.23 16 10 C 0.22 2.17 7.97 -156.31 -1.25 0.92 16 11 N -0.26 -2.66 12.32 32.16 0.40 -2.27 16 12 N -0.05 -0.38 13.47 60.35 0.81 0.44 16 13 N -0.22 -1.22 7.90 60.35 0.48 -0.74 16 14 H 0.48 0.20 8.96 -340.37 -3.05 -2.85 16 15 N -0.28 -2.25 12.17 32.17 0.39 -1.85 16 16 C -0.18 -1.94 9.55 -39.05 -0.37 -2.31 16 17 C 0.23 2.95 7.26 -17.52 -0.13 2.83 16 18 Cl -0.02 -0.27 29.10 -51.86 -1.51 -1.78 16 19 N -0.49 -7.65 9.87 -9.61 -0.09 -7.74 16 20 C 0.03 0.82 4.43 -27.88 -0.12 0.70 16 21 C -0.51 -13.87 8.41 -34.44 -0.29 -14.16 16 22 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 23 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 24 N -0.90 -26.33 13.29 55.43 0.74 -25.59 16 25 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 29 H 0.07 1.36 6.95 -51.93 -0.36 1.00 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.10 1.43 8.00 -52.49 -0.42 1.01 16 33 H 0.39 4.29 8.62 -182.60 -1.57 2.72 16 34 H 0.15 1.38 7.97 -52.48 -0.42 0.96 16 35 H 0.15 1.29 7.97 -52.49 -0.42 0.88 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 358.44 15.07 5.40 5.40 Total: -1.00 -33.48 358.44 -10.19 -43.67 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -7.86 Total: -4.91 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -4.48 Total: -9.01 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 3.28 Total: -49.65 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.51 Total: -1.78 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.48 -10.19 -43.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589787698.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 235.535 kcal (2) G-P(sol) polarization free energy of solvation -33.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 202.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 191.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds