Wall clock time and date at job start Tue Mar 31 2020 19:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47027 * 2 1 4 4 C 1.50701 * 109.47093 * 239.99796 * 2 1 3 5 5 N 1.28018 * 119.99685 * 119.99900 * 4 2 1 6 6 N 1.40101 * 119.99772 * 180.02562 * 5 4 2 7 7 C 1.39047 * 119.99976 * 180.02562 * 6 5 4 8 8 C 1.38932 * 119.64578 * 179.97438 * 7 6 5 9 9 C 1.39430 * 118.98774 * 179.97438 * 8 7 6 10 10 C 1.48476 * 120.85101 * 180.02562 * 9 8 7 11 11 N 1.34041 * 126.67126 * 359.66427 * 10 9 8 12 12 N 1.28992 * 107.26740 * 179.83669 * 11 10 9 13 13 N 1.28731 * 108.93774 * 0.43413 * 12 11 10 14 14 H 0.97001 * 125.33886 * 179.70336 * 13 12 11 15 15 N 1.28872 * 109.32159 * 359.72130 * 13 12 11 16 16 C 1.39869 * 118.29691 * 0.02562 * 9 8 7 17 17 C 1.38030 * 119.18897 * 359.97438 * 16 9 8 18 18 Cl 1.73599 * 119.52824 * 179.97438 * 17 16 9 19 19 N 1.32076 * 120.93891 * 0.26255 * 17 16 9 20 20 C 1.53004 * 109.47350 * 119.99944 * 2 1 3 21 21 C 1.50699 * 109.47048 * 295.00166 * 20 2 1 22 22 H 1.08000 * 119.99971 * 359.97438 * 21 20 2 23 23 C 1.37875 * 119.99826 * 179.97438 * 21 20 2 24 24 N 1.31514 * 120.00319 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99961 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46721 * 89.99908 * 25 23 21 27 27 H 1.48488 * 109.47004 * 209.99981 * 25 23 21 28 28 H 1.48503 * 109.46870 * 330.00223 * 25 23 21 29 29 H 1.08998 * 109.47196 * 300.00045 * 1 2 3 30 30 H 1.09000 * 109.47265 * 60.00084 * 1 2 3 31 31 H 1.09003 * 109.46961 * 179.97438 * 1 2 3 32 32 H 1.08001 * 120.00350 * 300.00352 * 4 2 1 33 33 H 0.97000 * 120.00435 * 359.97438 * 6 5 4 34 34 H 1.08004 * 120.50537 * 0.02562 * 8 7 6 35 35 H 1.08000 * 120.40726 * 180.02562 * 16 9 8 36 36 H 1.09007 * 109.46679 * 55.00026 * 20 2 1 37 37 H 1.08997 * 109.46919 * 174.99833 * 20 2 1 38 38 H 0.96995 * 119.99975 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 7 2.7683 -0.0883 -2.0731 6 7 3.2349 -0.7486 -3.2173 7 6 4.0347 -0.0730 -4.1323 8 6 4.4937 -0.7351 -5.2642 9 6 5.2944 -0.0443 -6.1729 10 6 5.8071 -0.7113 -7.3964 11 7 5.5913 -1.9816 -7.7658 12 7 6.2048 -2.1641 -8.8857 13 7 6.7963 -1.0710 -9.2211 14 1 7.3306 -0.9447 -10.0208 15 7 6.5677 -0.1710 -8.3275 16 6 5.6022 1.2930 -5.9025 17 6 5.1068 1.8790 -4.7552 18 17 5.4839 3.5382 -4.4105 19 7 4.3546 1.1939 -3.9130 20 6 2.0401 -0.7212 1.2493 21 6 1.6414 0.0570 2.4766 22 1 1.0807 0.9746 2.3757 23 6 1.9924 -0.4022 3.7283 24 7 2.6748 -1.5198 3.8512 25 14 1.4989 0.5629 5.2497 26 1 0.1712 0.0955 5.7231 27 1 2.5079 0.3521 6.3185 28 1 1.4250 2.0082 4.9166 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7714 -1.7444 -1.4014 33 1 3.0006 -1.6773 -3.3708 34 1 4.2336 -1.7689 -5.4379 35 1 6.2193 1.8604 -6.5834 36 1 1.6054 -1.7198 1.2951 37 1 3.1263 -0.7994 1.2055 38 1 2.9220 -1.8426 4.7318 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589787698.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:41 Heat of formation + Delta-G solvation = 169.842397 kcal Electronic energy + Delta-G solvation = -24116.789038 eV Core-core repulsion = 20251.328700 eV Total energy + Delta-G solvation = -3865.460337 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.096 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.58698 -41.48417 -38.79362 -37.74365 -36.73205 -35.73583 -35.08935 -34.44900 -33.05411 -32.67373 -30.00447 -28.77262 -26.54714 -25.88901 -25.69246 -24.27430 -23.68250 -22.48031 -20.70026 -20.36950 -19.06516 -18.71069 -18.24781 -18.13315 -17.32398 -16.94734 -16.50122 -16.09614 -16.05656 -15.64293 -15.05490 -14.90500 -14.75613 -14.59226 -14.01867 -13.57061 -13.46045 -13.24500 -13.05986 -12.89641 -12.72750 -12.49151 -12.45045 -12.34481 -12.28028 -12.26717 -12.21524 -11.73540 -11.33827 -11.23178 -10.99606 -10.71816 -10.67179 -10.50748 -10.48054 -8.87863 -8.13417 -6.21641 -0.60563 -0.14880 0.08231 0.65648 1.08787 1.27534 1.39025 1.45198 1.46130 1.53074 1.57107 2.40362 2.46871 2.59922 2.99285 3.21056 3.33249 3.68614 3.80056 3.93923 3.99108 4.15286 4.24006 4.31712 4.50832 4.52705 4.63155 4.85386 4.91468 5.09340 5.12700 5.27528 5.38372 5.51253 5.54423 5.57766 5.79756 5.90116 5.91924 6.30911 6.59879 6.93226 6.99970 7.35369 7.46243 8.98403 Molecular weight = 335.10amu Principal moments of inertia in cm(-1) A = 0.016660 B = 0.002098 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.302284 B =13340.118004 C =14289.015788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.029 4.029 3 H 0.061 0.939 4 C 0.095 3.905 5 N -0.267 5.267 6 N -0.570 5.570 7 C 0.430 3.570 8 C -0.176 4.176 9 C 0.081 3.919 10 C 0.206 3.794 11 N -0.279 5.279 12 N -0.050 5.050 13 N -0.193 5.193 14 H 0.498 0.502 15 N -0.274 5.274 16 C -0.164 4.164 17 C 0.210 3.790 18 Cl -0.022 7.022 19 N -0.530 5.530 20 C 0.041 3.959 21 C -0.526 4.526 22 H 0.065 0.935 23 C -0.001 4.001 24 N -0.934 5.934 25 Si 0.959 3.041 26 H -0.271 1.271 27 H -0.288 1.288 28 H -0.265 1.265 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.126 0.874 33 H 0.411 0.589 34 H 0.172 0.828 35 H 0.174 0.826 36 H 0.008 0.992 37 H -0.017 1.017 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.051 1.762 -29.692 30.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.050 4.050 3 H 0.079 0.921 4 C -0.120 4.120 5 N -0.069 5.069 6 N -0.295 5.295 7 C 0.195 3.805 8 C -0.204 4.204 9 C 0.070 3.930 10 C -0.074 4.074 11 N -0.152 5.152 12 N -0.045 5.045 13 N -0.045 5.045 14 H 0.358 0.642 15 N -0.127 5.127 16 C -0.189 4.189 17 C 0.045 3.955 18 Cl 0.006 6.994 19 N -0.249 5.249 20 C 0.003 3.997 21 C -0.564 4.564 22 H 0.083 0.917 23 C -0.198 4.198 24 N -0.575 5.575 25 Si 0.784 3.216 26 H -0.196 1.196 27 H -0.214 1.214 28 H -0.190 1.190 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.143 0.857 33 H 0.254 0.746 34 H 0.190 0.810 35 H 0.191 0.809 36 H 0.026 0.974 37 H 0.002 0.998 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.377 2.569 -29.451 30.470 hybrid contribution 0.220 -0.752 0.390 0.875 sum 7.597 1.817 -29.061 30.092 Atomic orbital electron populations 1.21586 0.92464 1.02231 1.01541 1.20030 0.96987 0.98527 0.89498 0.92065 1.26348 0.93092 0.98751 0.93820 1.74381 1.11194 1.25767 0.95521 1.45394 1.52059 1.12797 1.19247 1.17588 0.88922 0.87005 0.86971 1.21388 1.02420 1.03083 0.93477 1.16908 0.95227 0.91851 0.89030 1.23127 0.98662 0.89268 0.96385 1.76116 1.18753 1.15044 1.05284 1.78930 1.06650 1.10609 1.08327 1.47847 1.33189 1.03784 1.19646 0.64235 1.74920 1.17788 1.19216 1.00807 1.21613 1.04687 0.94418 0.98164 1.21215 0.94681 0.88693 0.90938 1.98414 1.91907 1.13607 1.95430 1.66337 1.17191 1.08297 1.33026 1.18947 0.94188 0.95240 0.91327 1.21604 1.34477 1.08647 0.91708 0.91674 1.25898 0.95301 0.96090 1.02536 1.70089 1.40253 1.22906 1.24226 0.85531 0.78008 0.79300 0.78734 1.19594 1.21371 1.18959 0.92237 0.92205 0.92114 0.85670 0.74643 0.81025 0.80887 0.97398 0.99832 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.07 8.99 71.98 0.65 -3.42 16 2 C -0.03 -1.16 2.75 -11.54 -0.03 -1.20 16 3 H 0.06 2.64 8.11 -2.39 -0.02 2.62 16 4 C 0.09 3.22 9.66 88.66 0.86 4.08 16 5 N -0.27 -9.40 10.96 -50.46 -0.55 -9.95 16 6 N -0.57 -15.89 6.41 -55.48 -0.36 -16.25 16 7 C 0.43 11.74 7.59 132.97 1.01 12.75 16 8 C -0.18 -3.64 9.62 22.72 0.22 -3.42 16 9 C 0.08 1.58 5.91 -19.87 -0.12 1.47 16 10 C 0.21 3.62 7.97 137.39 1.09 4.71 16 11 N -0.28 -5.18 12.32 -52.18 -0.64 -5.83 16 12 N -0.05 -0.71 13.47 37.02 0.50 -0.21 16 13 N -0.19 -1.54 7.90 37.02 0.29 -1.25 16 14 H 0.50 -1.15 8.96 -347.54 -3.12 -4.26 16 15 N -0.27 -3.65 12.17 -52.12 -0.63 -4.28 16 16 C -0.16 -3.21 9.55 22.62 0.22 -2.99 16 17 C 0.21 5.35 7.26 84.61 0.61 5.96 16 18 Cl -0.02 -0.52 29.10 -2.72 -0.08 -0.60 16 19 N -0.53 -16.54 9.87 -184.30 -1.82 -18.35 16 20 C 0.04 2.08 4.43 29.85 0.13 2.22 16 21 C -0.53 -28.89 8.41 25.60 0.22 -28.68 16 22 H 0.07 3.42 7.06 -2.91 -0.02 3.40 16 23 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 24 N -0.93 -56.15 13.29 21.45 0.28 -55.86 16 25 Si 0.96 44.01 29.54 68.60 2.03 46.03 16 26 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 27 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 28 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 29 H 0.06 2.17 6.95 -2.39 -0.02 2.15 16 30 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.13 3.50 8.00 -2.91 -0.02 3.47 16 33 H 0.41 8.51 8.62 -213.32 -1.84 6.67 16 34 H 0.17 2.78 7.97 -2.91 -0.02 2.76 16 35 H 0.17 2.55 7.97 -2.91 -0.02 2.53 16 36 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 37 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 38 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -73.38 358.44 0.53 -72.85 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -3.81 Total: 1.81 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: 5.32 Total: -8.11 kcal Atomic # 7 Polarization: -109.06 SS G_CDS: -2.93 Total: -111.99 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -0.08 Total: -0.60 kcal Total: -73.38 0.53 -72.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589787698.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 242.696 kcal (2) G-P(sol) polarization free energy of solvation -73.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds