Wall clock time and date at job start Tue Mar 31 2020 19:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47307 * 2 1 4 4 N 1.46494 * 109.47093 * 120.00270 * 2 1 3 5 5 S 1.65607 * 119.99993 * 264.99874 * 4 2 1 6 6 O 1.42103 * 106.40026 * 178.54020 * 5 4 2 7 7 O 1.42103 * 106.39981 * 311.45784 * 5 4 2 8 8 C 1.76195 * 107.21750 * 64.99973 * 5 4 2 9 9 C 1.38638 * 119.74990 * 269.73049 * 8 5 4 10 10 C 1.37619 * 120.24807 * 179.72433 * 9 8 5 11 11 C 1.40713 * 119.74372 * 0.56487 * 10 9 8 12 12 C 1.41398 * 120.24125 * 179.68481 * 11 10 9 13 13 H 1.08002 * 119.99636 * 155.31589 * 12 11 10 14 14 C 1.39942 * 120.00285 * 335.31239 * 12 11 10 15 15 N 1.30825 * 119.99815 * 342.22923 * 14 12 11 16 16 Si 1.86798 * 120.00416 * 162.23687 * 14 12 11 17 17 H 1.48499 * 109.47517 * 94.66003 * 16 14 12 18 18 H 1.48497 * 109.47364 * 214.66698 * 16 14 12 19 19 H 1.48510 * 109.46556 * 334.66168 * 16 14 12 20 20 C 1.40714 * 119.51223 * 359.70912 * 11 10 9 21 21 C 1.37612 * 119.74415 * 359.97438 * 20 11 10 22 22 C 1.50698 * 109.47060 * 240.00109 * 2 1 3 23 23 C 1.39866 * 125.89897 * 85.00139 * 22 2 1 24 24 C 1.35317 * 107.92471 * 180.02562 * 23 22 2 25 25 N 1.34956 * 107.74236 * 359.97438 * 24 23 22 26 26 C 1.46500 * 126.03792 * 180.02562 * 25 24 23 27 27 N 1.30839 * 125.90076 * 265.00475 * 22 2 1 28 28 H 1.08999 * 109.47010 * 300.00226 * 1 2 3 29 29 H 1.09007 * 109.47333 * 59.99419 * 1 2 3 30 30 H 1.08993 * 109.47382 * 179.97438 * 1 2 3 31 31 H 0.97000 * 120.00500 * 84.99650 * 4 2 1 32 32 H 1.08000 * 119.87391 * 359.97438 * 9 8 5 33 33 H 1.07997 * 120.12760 * 180.27562 * 10 9 8 34 34 H 0.97003 * 119.99715 * 179.97438 * 15 14 12 35 35 H 1.08003 * 120.12560 * 179.97438 * 20 11 10 36 36 H 1.08004 * 119.87803 * 180.02562 * 21 20 11 37 37 H 1.08002 * 126.03975 * 0.26225 * 23 22 2 38 38 H 1.07997 * 126.13178 * 179.97438 * 24 23 22 39 39 H 1.09005 * 109.46732 * 90.00280 * 26 25 24 40 40 H 1.08997 * 109.47132 * 210.00209 * 26 25 24 41 41 H 1.09000 * 109.47023 * 330.00319 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 16 2.4122 0.1771 2.5505 6 8 2.8124 -0.7699 3.5315 7 8 3.2437 1.2442 2.1156 8 6 0.9275 0.9147 3.1474 9 6 0.5584 2.1749 2.7029 10 6 -0.6019 2.7583 3.1581 11 6 -1.4087 2.0756 4.0871 12 6 -2.5996 2.6679 4.5668 13 1 -3.4006 2.0457 4.9381 14 6 -2.7405 4.0602 4.5606 15 7 -1.6841 4.8240 4.4500 16 14 -4.4367 4.8281 4.7104 17 1 -4.7083 5.1549 6.1333 18 1 -4.4913 6.0701 3.8982 19 1 -5.4590 3.8697 4.2187 20 6 -1.0212 0.7993 4.5357 21 6 0.1399 0.2326 4.0620 22 6 2.0323 -0.7104 -1.2305 23 6 2.2126 -0.1359 -2.4929 24 6 2.6754 -1.0970 -3.3255 25 7 2.7846 -2.2391 -2.6149 26 6 3.2496 -3.5310 -3.1258 27 7 2.3750 -1.9710 -1.3024 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 2.1109 -1.6562 1.1949 32 1 1.1818 2.6991 1.9937 33 1 -0.8899 3.7382 2.8071 34 1 -1.7818 5.7891 4.4454 35 1 -1.6327 0.2667 5.2489 36 1 0.4391 -0.7470 4.4044 37 1 2.0204 0.8938 -2.7558 38 1 2.9145 -0.9725 -4.3713 39 1 4.3302 -3.6031 -3.0018 40 1 2.7659 -4.3359 -2.5725 41 1 2.9988 -3.6151 -4.1832 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645844110.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:28 Heat of formation + Delta-G solvation = 15.307800 kcal Electronic energy + Delta-G solvation = -26290.141618 eV Core-core repulsion = 22491.271457 eV Total energy + Delta-G solvation = -3798.870162 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.25747 -37.57157 -36.59725 -36.07752 -35.05002 -34.01136 -32.88351 -30.27065 -30.09082 -29.55000 -29.39978 -26.67729 -25.77150 -23.13473 -21.49762 -21.26006 -21.09950 -19.72982 -18.77887 -17.59081 -17.41005 -16.89157 -16.36397 -15.67582 -15.53990 -15.48046 -14.51818 -14.15416 -14.05255 -13.68473 -13.54353 -13.30300 -13.22003 -13.08717 -12.67783 -12.62569 -12.42586 -12.17331 -11.98169 -11.70006 -11.42033 -11.36900 -11.30989 -11.21563 -11.17373 -10.98299 -10.78425 -10.67040 -10.41788 -9.76446 -9.66059 -9.45971 -9.31566 -9.03431 -8.62122 -7.91134 -7.66510 -7.11281 -4.76919 1.31220 1.80469 2.29024 2.39078 2.74171 2.89197 2.91023 2.95871 2.97463 3.68088 3.77810 4.26692 4.32818 4.60903 4.65045 4.77306 4.89830 5.13766 5.21266 5.23246 5.41203 5.46399 5.57568 5.69638 5.72196 5.88725 6.10835 6.12719 6.15946 6.41901 6.48123 6.63806 6.71476 6.74857 6.90324 6.95308 7.08439 7.36208 7.40603 7.46481 7.66525 7.70526 7.80113 8.00441 8.34933 8.54599 8.68216 9.80194 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.017518 B = 0.003076 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.991532 B = 9101.593455 C = 9904.669751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.237 3.763 3 H 0.108 0.892 4 N -1.118 6.118 5 S 2.692 3.308 6 O -0.985 6.985 7 O -0.984 6.984 8 C -0.785 4.785 9 C -0.015 4.015 10 C -0.182 4.182 11 C 0.141 3.859 12 C -0.436 4.436 13 H 0.087 0.913 14 C 0.073 3.927 15 N -0.765 5.765 16 Si 0.915 3.085 17 H -0.267 1.267 18 H -0.271 1.271 19 H -0.257 1.257 20 C -0.239 4.239 21 C 0.005 3.995 22 C 0.080 3.920 23 C -0.262 4.262 24 C 0.050 3.950 25 N -0.381 5.381 26 C 0.103 3.897 27 N -0.287 5.287 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.415 0.585 32 H 0.103 0.897 33 H 0.122 0.878 34 H 0.289 0.711 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.151 0.849 38 H 0.173 0.827 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.206 -8.165 -15.090 17.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.128 3.872 3 H 0.126 0.874 4 N -0.873 5.873 5 S 2.791 3.209 6 O -0.976 6.976 7 O -0.974 6.974 8 C -0.881 4.881 9 C -0.036 4.036 10 C -0.202 4.202 11 C 0.137 3.863 12 C -0.464 4.464 13 H 0.105 0.895 14 C -0.150 4.150 15 N -0.387 5.387 16 Si 0.738 3.262 17 H -0.192 1.192 18 H -0.196 1.196 19 H -0.180 1.180 20 C -0.260 4.260 21 C -0.015 4.015 22 C -0.088 4.088 23 C -0.292 4.292 24 C -0.095 4.095 25 N -0.163 5.163 26 C -0.038 4.038 27 N -0.109 5.109 28 H 0.105 0.895 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.249 0.751 32 H 0.122 0.878 33 H 0.140 0.860 34 H 0.100 0.900 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.169 0.831 38 H 0.190 0.810 39 H 0.091 0.909 40 H 0.107 0.893 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.362 -8.919 -14.199 17.326 hybrid contribution -1.403 0.882 -0.476 1.724 sum 2.959 -8.037 -14.676 16.992 Atomic orbital electron populations 1.22359 0.93437 1.03139 1.03945 1.19045 0.94234 0.94868 0.79096 0.87436 1.55748 1.84187 1.19804 1.27609 1.01243 0.74961 0.72802 0.71884 1.93489 1.82702 1.63096 1.58310 1.93485 1.66110 1.55841 1.81978 1.29128 1.26572 1.09300 1.23122 1.20246 0.95264 0.91892 0.96171 1.21324 0.96597 1.01427 1.00898 1.17840 0.90928 0.90460 0.87076 1.19923 1.01028 0.91570 1.33841 0.89533 1.26127 0.99064 0.97681 0.92092 1.69828 1.30973 1.06966 1.30956 0.86168 0.81480 0.79092 0.79413 1.19164 1.19608 1.18035 1.21012 0.99154 0.99274 1.06520 1.20147 0.92850 0.96415 0.92131 1.22435 0.98553 0.91787 0.96033 1.21387 1.13691 1.01355 0.92789 1.22491 1.01805 0.86455 0.98763 1.48506 1.51386 1.09088 1.07356 1.21815 1.00391 0.82106 0.99515 1.77240 1.20684 1.16565 0.96445 0.89476 0.91510 0.92108 0.75122 0.87850 0.86040 0.89985 0.88290 0.87864 0.83132 0.80978 0.90895 0.89347 0.89663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 9.50 37.16 0.35 -2.06 16 2 C 0.24 3.57 3.39 -69.09 -0.23 3.33 16 3 H 0.11 1.60 7.50 -51.93 -0.39 1.22 16 4 N -1.12 -18.40 5.45 -5.89 -0.03 -18.43 16 5 S 2.69 53.78 5.71 -107.50 -0.61 53.17 16 6 O -0.99 -21.82 17.26 -57.17 -0.99 -22.80 16 7 O -0.98 -21.68 16.59 -57.17 -0.95 -22.63 16 8 C -0.79 -17.07 5.08 -39.29 -0.20 -17.27 16 9 C -0.02 -0.35 8.57 -39.66 -0.34 -0.69 16 10 C -0.18 -4.43 8.70 -38.87 -0.34 -4.76 16 11 C 0.14 3.50 5.57 -106.82 -0.60 2.91 16 12 C -0.44 -10.59 9.05 -37.74 -0.34 -10.93 16 13 H 0.09 1.99 7.91 -52.49 -0.41 1.57 16 14 C 0.07 1.66 5.14 -17.34 -0.09 1.57 16 15 N -0.76 -18.20 10.97 55.55 0.61 -17.59 16 16 Si 0.92 16.90 29.59 -169.99 -5.03 11.87 16 17 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 18 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 19 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 20 C -0.24 -5.60 9.80 -38.88 -0.38 -5.98 16 21 C 0.00 0.10 9.49 -39.66 -0.38 -0.27 16 22 C 0.08 1.14 6.19 -82.41 -0.51 0.63 16 23 C -0.26 -3.09 10.74 -40.01 -0.43 -3.52 16 24 C 0.05 0.49 11.49 -17.22 -0.20 0.29 16 25 N -0.38 -4.19 4.01 -68.16 -0.27 -4.47 16 26 C 0.10 0.66 11.47 59.85 0.69 1.34 16 27 N -0.29 -4.14 11.93 33.67 0.40 -3.73 16 28 H 0.09 1.41 6.18 -51.93 -0.32 1.09 16 29 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.42 6.39 8.33 -34.47 -0.29 6.10 16 32 H 0.10 2.14 7.59 -52.49 -0.40 1.74 16 33 H 0.12 2.99 6.18 -52.49 -0.32 2.67 16 34 H 0.29 6.16 8.30 -40.82 -0.34 5.83 16 35 H 0.10 2.15 8.06 -52.48 -0.42 1.73 16 36 H 0.10 2.11 7.60 -52.48 -0.40 1.71 16 37 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 361.47 15.07 5.45 5.45 Total: -1.00 -32.38 361.47 -9.47 -41.85 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -5.05 Total: 12.73 kcal Atomic # 6 Polarization: -32.41 SS G_CDS: -2.99 Total: -35.40 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: 0.71 Total: -44.23 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: -1.94 Total: -45.44 kcal Atomic # 14 Polarization: 16.90 SS G_CDS: -5.03 Total: 11.87 kcal Atomic # 16 Polarization: 53.78 SS G_CDS: -0.61 Total: 53.17 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.38 -9.47 -41.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645844110.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.162 kcal (2) G-P(sol) polarization free energy of solvation -32.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds