Wall clock time and date at job start Tue Mar 31 2020 19:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47724 * 2 1 4 4 N 1.46507 * 109.47226 * 239.99709 * 2 1 3 5 5 S 1.65595 * 119.99890 * 95.00361 * 4 2 1 6 6 O 1.42102 * 106.40204 * 311.45771 * 5 4 2 7 7 O 1.42099 * 106.40184 * 178.54104 * 5 4 2 8 8 C 1.76195 * 107.22032 * 64.99795 * 5 4 2 9 9 C 1.38639 * 119.74789 * 89.99952 * 8 5 4 10 10 C 1.37622 * 120.24860 * 180.22997 * 9 8 5 11 11 C 1.40715 * 119.74171 * 359.52374 * 10 9 8 12 12 C 1.41399 * 120.24183 * 180.22515 * 11 10 9 13 13 H 1.07996 * 120.00044 * 204.52621 * 12 11 10 14 14 C 1.39950 * 119.99773 * 24.53568 * 12 11 10 15 15 N 1.30821 * 119.99991 * 17.71280 * 14 12 11 16 16 Si 1.86800 * 119.99756 * 197.70913 * 14 12 11 17 17 H 1.48502 * 109.46794 * 89.99841 * 16 14 12 18 18 H 1.48499 * 109.47177 * 209.99507 * 16 14 12 19 19 H 1.48492 * 109.47228 * 330.00168 * 16 14 12 20 20 C 1.40715 * 119.51175 * 0.47555 * 11 10 9 21 21 C 1.37615 * 119.74353 * 359.75047 * 20 11 10 22 22 C 1.50705 * 109.47021 * 119.99864 * 2 1 3 23 23 C 1.39868 * 125.89764 * 274.71552 * 22 2 1 24 24 C 1.35317 * 107.92161 * 179.86540 * 23 22 2 25 25 N 1.34951 * 107.74033 * 0.39132 * 24 23 22 26 26 C 1.46503 * 126.03055 * 179.75390 * 25 24 23 27 27 N 1.30834 * 125.89981 * 95.02591 * 22 2 1 28 28 H 1.09003 * 109.47075 * 300.00436 * 1 2 3 29 29 H 1.09003 * 109.46868 * 60.00188 * 1 2 3 30 30 H 1.08996 * 109.47235 * 180.02562 * 1 2 3 31 31 H 0.97003 * 119.99788 * 275.00171 * 4 2 1 32 32 H 1.08000 * 119.87572 * 359.95664 * 9 8 5 33 33 H 1.08002 * 120.12750 * 179.72105 * 10 9 8 34 34 H 0.97005 * 119.99803 * 180.02562 * 15 14 12 35 35 H 1.08000 * 120.12426 * 179.73134 * 20 11 10 36 36 H 1.08002 * 119.87199 * 180.02562 * 21 20 11 37 37 H 1.08004 * 126.04143 * 359.97438 * 23 22 2 38 38 H 1.08001 * 126.12866 * 180.14934 * 24 23 22 39 39 H 1.09000 * 109.46965 * 270.02416 * 26 25 24 40 40 H 1.08997 * 109.47819 * 30.02573 * 26 25 24 41 41 H 1.09003 * 109.47001 * 150.02935 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 16 2.4123 0.1770 -2.5505 6 8 1.3247 1.0592 -2.7922 7 8 2.8777 -0.7636 -3.5084 8 6 3.7928 1.1908 -2.1371 9 6 5.0797 0.7088 -2.3207 10 6 6.1654 1.4901 -1.9968 11 6 5.9654 2.7864 -1.4872 12 6 7.0733 3.5999 -1.1555 13 1 6.9643 4.3900 -0.4273 14 6 8.3111 3.3814 -1.7709 15 7 8.3781 2.6847 -2.8762 16 14 9.8675 4.0846 -1.0143 17 1 10.4452 3.0994 -0.0652 18 1 10.8523 4.3745 -2.0873 19 1 9.5422 5.3388 -0.2888 20 6 4.6548 3.2651 -1.3051 21 6 3.5840 2.4645 -1.6313 22 6 2.0323 -0.7104 1.2305 23 6 2.2178 -0.1346 2.4916 24 6 2.6764 -1.0968 3.3253 25 7 2.7856 -2.2388 2.6146 26 6 3.2510 -3.5305 3.1256 27 7 2.3755 -1.9709 1.3023 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 2.1110 -1.6563 -1.1948 32 1 5.2307 -0.2852 -2.7151 33 1 7.1670 1.1110 -2.1364 34 1 9.2360 2.5329 -3.3026 35 1 4.4899 4.2568 -0.9105 36 1 2.5772 2.8300 -1.4928 37 1 2.0270 0.8955 2.7541 38 1 2.9160 -0.9721 4.3710 39 1 4.3316 -3.6022 3.0018 40 1 3.0001 -3.6149 4.1829 41 1 2.7677 -4.3356 2.5720 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645844111.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:31 Heat of formation + Delta-G solvation = 14.838667 kcal Electronic energy + Delta-G solvation = -26485.675316 eV Core-core repulsion = 22686.784811 eV Total energy + Delta-G solvation = -3798.890505 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.18303 -37.53981 -36.63062 -36.05919 -35.04911 -34.00357 -32.82004 -30.21936 -30.03013 -29.61084 -29.42740 -26.64482 -25.78198 -23.16522 -21.46581 -21.24653 -21.08932 -19.68885 -18.76485 -17.60530 -17.36350 -16.77955 -16.40023 -15.79867 -15.49657 -15.41837 -14.45079 -14.15755 -14.03503 -13.70152 -13.50534 -13.37254 -13.17187 -13.05820 -12.66516 -12.60144 -12.38251 -12.15091 -12.04721 -11.70125 -11.46555 -11.40680 -11.33209 -11.23929 -11.19025 -10.94269 -10.84855 -10.62643 -10.38253 -9.78028 -9.64495 -9.47181 -9.28458 -9.02143 -8.54285 -7.91887 -7.66083 -7.10508 -4.76680 1.31771 1.88673 2.29652 2.46499 2.80861 2.89266 2.92689 2.93996 2.96696 3.67992 3.77440 4.27802 4.35959 4.60156 4.72886 4.84048 4.98328 5.16021 5.19674 5.22915 5.42198 5.42833 5.59327 5.64776 5.77130 5.89501 5.98511 6.09230 6.16914 6.33050 6.39552 6.63581 6.71714 6.74756 6.95989 6.98545 7.08499 7.36374 7.39692 7.46950 7.67782 7.76219 7.80802 8.00415 8.35868 8.54896 8.69073 9.81097 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010812 B = 0.003975 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.150521 B = 7041.964630 C = 8530.147063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.240 3.760 3 H 0.105 0.895 4 N -1.117 6.117 5 S 2.693 3.307 6 O -0.983 6.983 7 O -0.984 6.984 8 C -0.786 4.786 9 C -0.012 4.012 10 C -0.184 4.184 11 C 0.141 3.859 12 C -0.438 4.438 13 H 0.087 0.913 14 C 0.072 3.928 15 N -0.766 5.766 16 Si 0.917 3.083 17 H -0.264 1.264 18 H -0.274 1.274 19 H -0.258 1.258 20 C -0.237 4.237 21 C -0.002 4.002 22 C 0.078 3.922 23 C -0.260 4.260 24 C 0.051 3.949 25 N -0.380 5.380 26 C 0.103 3.897 27 N -0.286 5.286 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.416 0.584 32 H 0.102 0.898 33 H 0.121 0.879 34 H 0.289 0.711 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.150 0.850 38 H 0.173 0.827 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.274 -7.241 12.756 16.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.130 3.870 3 H 0.122 0.878 4 N -0.873 5.873 5 S 2.791 3.209 6 O -0.973 6.973 7 O -0.974 6.974 8 C -0.882 4.882 9 C -0.033 4.033 10 C -0.204 4.204 11 C 0.137 3.863 12 C -0.465 4.465 13 H 0.105 0.895 14 C -0.150 4.150 15 N -0.388 5.388 16 Si 0.740 3.260 17 H -0.189 1.189 18 H -0.199 1.199 19 H -0.182 1.182 20 C -0.258 4.258 21 C -0.022 4.022 22 C -0.090 4.090 23 C -0.290 4.290 24 C -0.094 4.094 25 N -0.162 5.162 26 C -0.038 4.038 27 N -0.108 5.108 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.249 0.751 32 H 0.120 0.880 33 H 0.139 0.861 34 H 0.100 0.900 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.168 0.832 38 H 0.190 0.810 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.429 -8.468 11.173 15.866 hybrid contribution 1.512 0.852 1.307 2.173 sum -5.917 -7.615 12.480 15.772 Atomic orbital electron populations 1.22300 0.93861 1.02821 1.03409 1.18983 0.93903 0.94825 0.79277 0.87765 1.55790 1.82594 1.19504 1.29376 1.01275 0.74262 0.73116 0.72238 1.93482 1.53660 1.66255 1.83898 1.93496 1.82617 1.63180 1.58133 1.29165 1.13410 1.11382 1.34224 1.20247 0.91470 0.97566 0.93973 1.21331 0.97725 0.94524 1.06839 1.17844 0.91901 0.91053 0.85510 1.19936 0.93205 1.13782 1.19573 0.89462 1.26135 1.01542 0.93789 0.93525 1.69831 1.28469 1.28135 1.12350 0.86154 0.79665 0.80383 0.79782 1.18887 1.19871 1.18186 1.21016 0.92767 0.99479 1.12516 1.20176 0.97609 0.91685 0.92705 1.22374 0.98849 0.91865 0.95933 1.21361 1.13712 1.01170 0.92789 1.22483 1.01700 0.86441 0.98805 1.48473 1.51342 1.09118 1.07276 1.21814 1.00550 0.82050 0.99409 1.77206 1.20475 1.16668 0.96450 0.91374 0.90139 0.92189 0.75075 0.87998 0.86108 0.89992 0.88174 0.87699 0.83209 0.81006 0.90796 0.89701 0.89428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.50 37.16 0.35 -1.72 16 2 C 0.24 3.55 3.25 -69.08 -0.22 3.33 16 3 H 0.10 1.55 7.22 -51.93 -0.37 1.17 16 4 N -1.12 -18.37 5.45 -5.88 -0.03 -18.40 16 5 S 2.69 53.75 5.64 -107.50 -0.61 53.14 16 6 O -0.98 -20.66 16.52 -57.17 -0.94 -21.60 16 7 O -0.98 -22.14 17.26 -57.17 -0.99 -23.13 16 8 C -0.79 -17.69 5.84 -39.29 -0.23 -17.92 16 9 C -0.01 -0.29 9.49 -39.66 -0.38 -0.67 16 10 C -0.18 -4.72 8.70 -38.87 -0.34 -5.05 16 11 C 0.14 3.60 5.57 -106.82 -0.60 3.00 16 12 C -0.44 -10.83 9.06 -37.74 -0.34 -11.17 16 13 H 0.09 2.03 7.91 -52.49 -0.41 1.62 16 14 C 0.07 1.69 5.14 -17.34 -0.09 1.60 16 15 N -0.77 -18.68 10.95 55.55 0.61 -18.07 16 16 Si 0.92 17.20 29.59 -169.99 -5.03 12.17 16 17 H -0.26 -4.91 7.11 56.52 0.40 -4.50 16 18 H -0.27 -5.04 7.11 56.52 0.40 -4.63 16 19 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 20 C -0.24 -5.60 9.80 -38.87 -0.38 -5.98 16 21 C 0.00 -0.04 8.86 -39.67 -0.35 -0.39 16 22 C 0.08 1.14 6.19 -82.41 -0.51 0.63 16 23 C -0.26 -3.28 10.74 -40.01 -0.43 -3.71 16 24 C 0.05 0.55 11.49 -17.22 -0.20 0.35 16 25 N -0.38 -4.52 4.01 -68.16 -0.27 -4.80 16 26 C 0.10 0.76 11.47 59.85 0.69 1.44 16 27 N -0.29 -4.28 11.93 33.67 0.40 -3.88 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 1.08 7.64 -51.93 -0.40 0.68 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.42 6.44 8.33 -34.47 -0.29 6.15 16 32 H 0.10 2.32 7.60 -52.49 -0.40 1.92 16 33 H 0.12 3.14 6.16 -52.49 -0.32 2.82 16 34 H 0.29 6.32 8.30 -40.82 -0.34 5.99 16 35 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 36 H 0.11 2.05 7.60 -52.49 -0.40 1.65 16 37 H 0.15 1.58 8.06 -52.48 -0.42 1.16 16 38 H 0.17 1.15 8.06 -52.49 -0.42 0.72 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 363.40 15.07 5.48 5.48 Total: -1.00 -32.90 363.40 -9.52 -42.42 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -5.11 Total: 12.93 kcal Atomic # 6 Polarization: -33.23 SS G_CDS: -3.03 Total: -36.26 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: 0.70 Total: -45.15 kcal Atomic # 8 Polarization: -42.80 SS G_CDS: -1.93 Total: -44.73 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.03 Total: 12.17 kcal Atomic # 16 Polarization: 53.75 SS G_CDS: -0.61 Total: 53.14 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.90 -9.52 -42.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645844111.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.258 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds