Wall clock time and date at job start Tue Mar 31 2020 19:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47724 * 2 1 4 4 N 1.46507 * 109.47226 * 239.99709 * 2 1 3 5 5 S 1.65595 * 119.99890 * 95.00361 * 4 2 1 6 6 O 1.42102 * 106.40204 * 311.45771 * 5 4 2 7 7 O 1.42099 * 106.40184 * 178.54104 * 5 4 2 8 8 C 1.76195 * 107.22032 * 64.99795 * 5 4 2 9 9 C 1.38639 * 119.74789 * 89.99952 * 8 5 4 10 10 C 1.37622 * 120.24860 * 180.22997 * 9 8 5 11 11 C 1.40715 * 119.74171 * 359.52374 * 10 9 8 12 12 C 1.41399 * 120.24183 * 180.22515 * 11 10 9 13 13 H 1.07996 * 120.00044 * 204.52621 * 12 11 10 14 14 C 1.39950 * 119.99773 * 24.53568 * 12 11 10 15 15 N 1.30821 * 119.99991 * 17.71280 * 14 12 11 16 16 Si 1.86800 * 119.99756 * 197.70913 * 14 12 11 17 17 H 1.48502 * 109.46794 * 89.99841 * 16 14 12 18 18 H 1.48499 * 109.47177 * 209.99507 * 16 14 12 19 19 H 1.48492 * 109.47228 * 330.00168 * 16 14 12 20 20 C 1.40715 * 119.51175 * 0.47555 * 11 10 9 21 21 C 1.37615 * 119.74353 * 359.75047 * 20 11 10 22 22 C 1.50705 * 109.47021 * 119.99864 * 2 1 3 23 23 C 1.39868 * 125.89764 * 274.71552 * 22 2 1 24 24 C 1.35317 * 107.92161 * 179.86540 * 23 22 2 25 25 N 1.34951 * 107.74033 * 0.39132 * 24 23 22 26 26 C 1.46503 * 126.03055 * 179.75390 * 25 24 23 27 27 N 1.30834 * 125.89981 * 95.02591 * 22 2 1 28 28 H 1.09003 * 109.47075 * 300.00436 * 1 2 3 29 29 H 1.09003 * 109.46868 * 60.00188 * 1 2 3 30 30 H 1.08996 * 109.47235 * 180.02562 * 1 2 3 31 31 H 0.97003 * 119.99788 * 275.00171 * 4 2 1 32 32 H 1.08000 * 119.87572 * 359.95664 * 9 8 5 33 33 H 1.08002 * 120.12750 * 179.72105 * 10 9 8 34 34 H 0.97005 * 119.99803 * 180.02562 * 15 14 12 35 35 H 1.08000 * 120.12426 * 179.73134 * 20 11 10 36 36 H 1.08002 * 119.87199 * 180.02562 * 21 20 11 37 37 H 1.08004 * 126.04143 * 359.97438 * 23 22 2 38 38 H 1.08001 * 126.12866 * 180.14934 * 24 23 22 39 39 H 1.09000 * 109.46965 * 270.02416 * 26 25 24 40 40 H 1.08997 * 109.47819 * 30.02573 * 26 25 24 41 41 H 1.09003 * 109.47001 * 150.02935 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 16 2.4123 0.1770 -2.5505 6 8 1.3247 1.0592 -2.7922 7 8 2.8777 -0.7636 -3.5084 8 6 3.7928 1.1908 -2.1371 9 6 5.0797 0.7088 -2.3207 10 6 6.1654 1.4901 -1.9968 11 6 5.9654 2.7864 -1.4872 12 6 7.0733 3.5999 -1.1555 13 1 6.9643 4.3900 -0.4273 14 6 8.3111 3.3814 -1.7709 15 7 8.3781 2.6847 -2.8762 16 14 9.8675 4.0846 -1.0143 17 1 10.4452 3.0994 -0.0652 18 1 10.8523 4.3745 -2.0873 19 1 9.5422 5.3388 -0.2888 20 6 4.6548 3.2651 -1.3051 21 6 3.5840 2.4645 -1.6313 22 6 2.0323 -0.7104 1.2305 23 6 2.2178 -0.1346 2.4916 24 6 2.6764 -1.0968 3.3253 25 7 2.7856 -2.2388 2.6146 26 6 3.2510 -3.5305 3.1256 27 7 2.3755 -1.9709 1.3023 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 2.1110 -1.6563 -1.1948 32 1 5.2307 -0.2852 -2.7151 33 1 7.1670 1.1110 -2.1364 34 1 9.2360 2.5329 -3.3026 35 1 4.4899 4.2568 -0.9105 36 1 2.5772 2.8300 -1.4928 37 1 2.0270 0.8955 2.7541 38 1 2.9160 -0.9721 4.3710 39 1 4.3316 -3.6022 3.0018 40 1 3.0001 -3.6149 4.1829 41 1 2.7677 -4.3356 2.5720 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645844111.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:30 Heat of formation + Delta-G solvation = -7.650407 kcal Electronic energy + Delta-G solvation = -26486.650516 eV Core-core repulsion = 22686.784811 eV Total energy + Delta-G solvation = -3799.865704 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.09159 -39.37889 -38.22229 -37.35287 -36.76932 -35.80125 -33.71076 -32.06583 -31.29761 -30.94372 -30.74655 -27.62614 -27.41972 -24.20367 -23.28301 -22.98373 -22.08375 -20.75359 -20.29739 -19.42271 -18.72911 -18.22956 -17.79115 -17.21903 -16.94932 -16.33391 -16.03330 -15.80502 -15.18733 -15.03004 -14.96214 -14.63938 -14.44527 -14.11616 -13.98173 -13.97656 -13.62807 -13.52102 -13.24684 -13.10628 -13.09287 -12.99877 -12.95353 -12.88349 -12.58194 -12.56440 -12.13926 -11.98771 -11.61886 -11.54425 -11.37844 -11.21305 -10.56262 -10.14487 -9.78311 -9.54288 -9.43196 -8.86740 -6.64570 -0.31115 0.49085 0.99970 1.06652 1.35349 1.43184 1.51263 1.69912 1.83661 2.11095 2.25045 2.53959 2.92750 3.49578 3.55271 3.60526 3.89294 4.10033 4.23571 4.28539 4.32615 4.35733 4.46011 4.47418 4.71019 4.75497 4.87680 4.89457 4.92702 4.96254 5.03577 5.10941 5.24460 5.31220 5.33935 5.53028 5.60349 5.68446 5.76494 5.93505 6.09843 6.15615 6.23371 6.49648 6.68685 6.80192 6.82015 8.08538 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010812 B = 0.003975 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.150521 B = 7041.964630 C = 8530.147063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.232 3.768 3 H 0.101 0.899 4 N -1.105 6.105 5 S 2.724 3.276 6 O -0.989 6.989 7 O -1.009 7.009 8 C -0.796 4.796 9 C -0.023 4.023 10 C -0.208 4.208 11 C 0.113 3.887 12 C -0.466 4.466 13 H 0.095 0.905 14 C 0.033 3.967 15 N -0.801 5.801 16 Si 0.993 3.007 17 H -0.260 1.260 18 H -0.266 1.266 19 H -0.250 1.250 20 C -0.252 4.252 21 C -0.001 4.001 22 C 0.059 3.941 23 C -0.285 4.285 24 C 0.063 3.937 25 N -0.383 5.383 26 C 0.094 3.906 27 N -0.325 5.325 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.421 0.579 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.297 0.703 35 H 0.116 0.884 36 H 0.133 0.867 37 H 0.164 0.836 38 H 0.216 0.784 39 H 0.077 0.923 40 H 0.121 0.879 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.512 -7.086 15.083 18.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.123 3.877 3 H 0.119 0.881 4 N -0.864 5.864 5 S 2.819 3.181 6 O -0.979 6.979 7 O -1.000 7.000 8 C -0.889 4.889 9 C -0.043 4.043 10 C -0.229 4.229 11 C 0.109 3.891 12 C -0.492 4.492 13 H 0.113 0.887 14 C -0.186 4.186 15 N -0.424 5.424 16 Si 0.812 3.188 17 H -0.184 1.184 18 H -0.191 1.191 19 H -0.173 1.173 20 C -0.272 4.272 21 C -0.020 4.020 22 C -0.108 4.108 23 C -0.315 4.315 24 C -0.083 4.083 25 N -0.165 5.165 26 C -0.046 4.046 27 N -0.149 5.149 28 H 0.110 0.890 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.256 0.744 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.109 0.891 35 H 0.135 0.865 36 H 0.151 0.849 37 H 0.181 0.819 38 H 0.232 0.768 39 H 0.096 0.904 40 H 0.140 0.860 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.662 -8.308 13.496 17.603 hybrid contribution 1.498 0.691 0.638 1.768 sum -6.164 -7.617 14.134 17.199 Atomic orbital electron populations 1.22259 0.92146 1.03266 1.04142 1.19217 0.95293 0.94513 0.78717 0.88085 1.55438 1.82107 1.19545 1.29316 1.00368 0.73166 0.72365 0.72156 1.93467 1.53283 1.66813 1.84357 1.93455 1.82974 1.63692 1.59886 1.29607 1.13819 1.12309 1.33165 1.20406 0.92099 0.97745 0.94012 1.21331 0.97554 0.95326 1.08666 1.18200 0.93294 0.91342 0.86242 1.20260 0.94157 1.14446 1.20382 0.88664 1.27073 1.04478 0.93706 0.93392 1.69879 1.29841 1.29098 1.13578 0.85025 0.75104 0.79750 0.78898 1.18416 1.19057 1.17311 1.21278 0.92493 1.00493 1.12961 1.20502 0.98651 0.91299 0.91582 1.22392 0.99714 0.92218 0.96446 1.21683 1.14885 1.02488 0.92427 1.23158 0.99519 0.85368 1.00303 1.48855 1.50492 1.10766 1.06430 1.22167 1.00719 0.80307 1.01407 1.77103 1.21934 1.17080 0.98749 0.89003 0.90965 0.91895 0.74367 0.87609 0.87493 0.89144 0.86548 0.84920 0.81854 0.76772 0.90443 0.86035 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 9.50 71.98 0.68 -3.10 16 2 C 0.23 6.67 3.25 44.24 0.14 6.81 16 3 H 0.10 2.93 7.22 -2.39 -0.02 2.91 16 4 N -1.11 -36.00 5.45 -172.51 -0.94 -36.94 16 5 S 2.72 108.23 5.64 -56.49 -0.32 107.91 16 6 O -0.99 -40.70 16.52 -128.00 -2.11 -42.81 16 7 O -1.01 -45.68 17.26 -128.00 -2.21 -47.89 16 8 C -0.80 -36.12 5.84 22.46 0.13 -35.99 16 9 C -0.02 -1.12 9.49 22.22 0.21 -0.91 16 10 C -0.21 -11.12 8.70 22.73 0.20 -10.92 16 11 C 0.11 5.92 5.57 -21.29 -0.12 5.80 16 12 C -0.47 -23.42 9.06 23.46 0.21 -23.21 16 13 H 0.10 4.46 7.91 -2.91 -0.02 4.43 16 14 C 0.03 1.53 5.14 85.26 0.44 1.97 16 15 N -0.80 -40.00 10.95 21.83 0.24 -39.76 16 16 Si 0.99 34.88 29.59 68.60 2.03 36.91 16 17 H -0.26 -8.87 7.11 99.48 0.71 -8.17 16 18 H -0.27 -8.94 7.11 99.48 0.71 -8.23 16 19 H -0.25 -8.37 7.11 99.48 0.71 -7.66 16 20 C -0.25 -11.99 9.80 22.73 0.22 -11.76 16 21 C 0.00 -0.03 8.86 22.21 0.20 0.17 16 22 C 0.06 1.69 6.19 43.10 0.27 1.95 16 23 C -0.29 -6.68 10.74 21.99 0.24 -6.44 16 24 C 0.06 1.18 11.49 83.54 0.96 2.14 16 25 N -0.38 -8.38 4.01 -369.55 -1.48 -9.86 16 26 C 0.09 1.16 11.47 127.77 1.47 2.62 16 27 N -0.32 -9.49 11.93 -47.38 -0.57 -10.06 16 28 H 0.09 1.73 8.14 -2.39 -0.02 1.72 16 29 H 0.07 1.84 7.64 -2.39 -0.02 1.82 16 30 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.42 13.03 8.33 -96.74 -0.81 12.23 16 32 H 0.11 5.02 7.60 -2.91 -0.02 5.00 16 33 H 0.11 5.87 6.16 -2.91 -0.02 5.85 16 34 H 0.30 13.25 8.30 -92.70 -0.77 12.48 16 35 H 0.12 4.99 8.06 -2.91 -0.02 4.97 16 36 H 0.13 5.01 7.60 -2.91 -0.02 4.99 16 37 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 38 H 0.22 1.92 8.06 -2.91 -0.02 1.90 16 39 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -72.18 363.40 0.14 -72.04 By element: Atomic # 1 Polarization: 41.07 SS G_CDS: 0.26 Total: 41.33 kcal Atomic # 6 Polarization: -76.11 SS G_CDS: 5.25 Total: -70.86 kcal Atomic # 7 Polarization: -93.88 SS G_CDS: -2.75 Total: -96.63 kcal Atomic # 8 Polarization: -86.38 SS G_CDS: -4.32 Total: -90.70 kcal Atomic # 14 Polarization: 34.88 SS G_CDS: 2.03 Total: 36.91 kcal Atomic # 16 Polarization: 108.23 SS G_CDS: -0.32 Total: 107.91 kcal Total: -72.18 0.14 -72.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645844111.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.388 kcal (2) G-P(sol) polarization free energy of solvation -72.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds