Wall clock time and date at job start Tue Mar 31 2020 19:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47031 * 2 1 4 4 N 1.46505 * 109.46897 * 119.99417 * 2 1 3 5 5 C 1.36936 * 120.00059 * 275.00467 * 4 2 1 6 6 H 1.07999 * 120.00160 * 359.97438 * 5 4 2 7 7 C 1.38821 * 119.99726 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99425 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00023 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46783 * 90.00381 * 9 7 5 11 11 H 1.48503 * 109.46998 * 210.00338 * 9 7 5 12 12 H 1.48492 * 109.47209 * 330.00664 * 9 7 5 13 13 C 1.52999 * 109.47733 * 239.99620 * 2 1 3 14 14 H 1.09004 * 109.46852 * 300.00612 * 13 2 1 15 15 C 1.52994 * 109.47355 * 180.02562 * 13 2 1 16 16 N 1.46497 * 109.46865 * 60.00030 * 13 2 1 17 17 C 1.34778 * 120.00036 * 205.00427 * 16 13 2 18 18 O 1.21612 * 119.99971 * 359.97438 * 17 16 13 19 19 C 1.47299 * 119.99993 * 179.97438 * 17 16 13 20 20 C 1.34222 * 124.78960 * 180.02562 * 19 17 16 21 21 C 1.39565 * 115.53172 * 179.97438 * 20 19 17 22 22 C 1.47756 * 129.59415 * 180.02562 * 21 20 19 23 23 C 1.34058 * 119.55460 * 179.97438 * 22 21 20 24 24 N 1.36560 * 121.42530 * 359.97438 * 23 22 21 25 25 H 0.97000 * 119.15517 * 179.97438 * 24 23 22 26 26 C 1.34294 * 121.67734 * 0.02562 * 24 23 22 27 27 O 1.21955 * 119.69033 * 180.02562 * 26 24 23 28 28 C 1.39383 * 112.90343 * 359.97438 * 21 20 19 29 29 S 1.75559 * 124.79216 * 359.97438 * 19 17 16 30 30 H 1.08989 * 109.47409 * 300.00255 * 1 2 3 31 31 H 1.08997 * 109.46375 * 60.00461 * 1 2 3 32 32 H 1.08998 * 109.47031 * 179.97438 * 1 2 3 33 33 H 0.96998 * 119.99838 * 95.00648 * 4 2 1 34 34 H 0.97007 * 119.99299 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.47221 * 180.02562 * 15 13 2 36 36 H 1.08998 * 109.47007 * 300.00133 * 15 13 2 37 37 H 1.08997 * 109.47300 * 59.99850 * 15 13 2 38 38 H 0.96998 * 120.00092 * 24.99910 * 16 13 2 39 39 H 1.08003 * 122.23544 * 359.96375 * 20 19 17 40 40 H 1.07997 * 120.22021 * 359.70258 * 22 21 20 41 41 H 1.08000 * 119.28885 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1490 -0.0073 2.3758 6 1 1.8925 1.0407 2.4242 7 6 2.6122 -0.6616 3.5092 8 7 2.7382 -0.0047 4.6428 9 14 3.0565 -2.4740 3.4254 10 1 4.4891 -2.6160 3.0611 11 1 2.8174 -3.1040 4.7487 12 1 2.2164 -3.1427 2.3997 13 6 2.0402 -0.7213 -1.2491 14 1 1.6768 -1.7490 -1.2491 15 6 3.5701 -0.7218 -1.2487 16 7 1.5519 -0.0308 -2.4453 17 6 1.4232 -0.7032 -3.6063 18 8 1.7129 -1.8830 -3.6609 19 6 0.9317 -0.0090 -4.8089 20 6 0.7665 -0.5831 -6.0108 21 6 0.2880 0.2564 -7.0178 22 6 -0.0042 -0.0442 -8.4347 23 6 -0.4636 0.9277 -9.2357 24 7 -0.6696 2.1952 -8.7712 25 1 -1.0027 2.8732 -9.3797 26 6 -0.4219 2.5272 -7.4937 27 8 -0.6194 3.6703 -7.1174 28 6 0.0663 1.5601 -6.5774 29 16 0.4781 1.6858 -4.8722 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2491 -1.6316 1.1528 34 1 3.0616 -0.4620 5.4349 35 1 3.9335 -1.2353 -2.1389 36 1 3.9338 0.3057 -1.2485 37 1 3.9331 -1.2358 -0.3587 38 1 1.3211 0.9104 -2.4018 39 1 0.9893 -1.6252 -6.1870 40 1 0.1555 -1.0390 -8.8234 41 1 -0.6761 0.7031 -10.2705 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674686978.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:53 Heat of formation + Delta-G solvation = -6.125722 kcal Electronic energy + Delta-G solvation = -25470.097735 eV Core-core repulsion = 21670.298147 eV Total energy + Delta-G solvation = -3799.799589 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.40800 -40.03703 -37.97157 -37.04387 -36.32991 -34.17343 -32.13048 -31.56791 -30.37272 -29.62944 -28.93614 -26.02390 -24.24048 -23.90619 -22.85059 -21.48929 -20.69969 -20.27775 -19.42615 -18.54690 -17.78900 -17.18825 -16.96276 -16.05074 -16.02234 -15.86570 -15.17114 -14.86538 -14.57245 -14.33115 -14.03202 -13.84457 -13.64252 -13.23929 -13.02060 -12.98370 -12.52549 -12.46378 -12.43417 -12.21312 -11.91216 -11.41649 -11.34659 -11.16215 -10.94325 -10.82366 -10.72322 -10.36122 -10.18868 -10.01381 -9.87146 -9.62141 -9.38078 -9.16781 -8.92500 -8.21076 -7.33944 -5.80482 -3.17332 -0.33374 0.82772 0.94120 1.38685 1.73124 2.56735 2.88107 2.90634 3.10064 3.36677 3.40024 3.44871 3.97394 4.12343 4.43482 4.46373 4.56403 4.67267 5.03458 5.09496 5.27889 5.32601 5.36621 5.46906 5.57852 5.58992 5.64721 5.73666 5.95058 5.98155 6.16856 6.18251 6.23367 6.32604 6.42242 6.43015 6.60376 6.71728 6.89219 7.34930 7.45614 7.92812 7.99901 8.37581 9.14789 9.87232 10.05828 11.37389 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.028357 B = 0.002383 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.187195 B =11749.498572 C =12408.536623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.173 3.827 3 H 0.061 0.939 4 N -0.741 5.741 5 C -0.244 4.244 6 H 0.091 0.909 7 C 0.007 3.993 8 N -0.932 5.932 9 Si 0.881 3.119 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.276 1.276 13 C 0.132 3.868 14 H 0.089 0.911 15 C -0.156 4.156 16 N -0.707 5.707 17 C 0.586 3.414 18 O -0.521 6.521 19 C -0.212 4.212 20 C -0.069 4.069 21 C -0.003 4.003 22 C -0.173 4.173 23 C 0.107 3.893 24 N -0.618 5.618 25 H 0.420 0.580 26 C 0.570 3.430 27 O -0.538 6.538 28 C -0.276 4.276 29 S 0.254 5.746 30 H 0.062 0.938 31 H 0.038 0.962 32 H 0.047 0.953 33 H 0.363 0.637 34 H 0.260 0.740 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.398 0.602 39 H 0.161 0.839 40 H 0.153 0.847 41 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.372 1.234 -31.695 32.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.063 3.937 3 H 0.079 0.921 4 N -0.385 5.385 5 C -0.373 4.373 6 H 0.109 0.891 7 C -0.189 4.189 8 N -0.579 5.579 9 Si 0.711 3.289 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.202 1.202 13 C 0.028 3.972 14 H 0.107 0.893 15 C -0.214 4.214 16 N -0.358 5.358 17 C 0.369 3.631 18 O -0.398 6.398 19 C -0.333 4.333 20 C -0.102 4.102 21 C -0.019 4.019 22 C -0.199 4.199 23 C -0.017 4.017 24 N -0.255 5.255 25 H 0.258 0.742 26 C 0.364 3.636 27 O -0.418 6.418 28 C -0.397 4.397 29 S 0.525 5.475 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.196 0.804 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.232 0.768 39 H 0.178 0.822 40 H 0.171 0.829 41 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -6.209 2.370 -29.972 30.700 hybrid contribution 0.046 -1.809 -1.272 2.212 sum -6.164 0.560 -31.245 31.852 Atomic orbital electron populations 1.22437 0.98423 1.01270 1.00533 1.20368 0.92409 0.95958 0.85003 0.92061 1.42639 1.79881 1.09348 1.06621 1.19007 1.37322 0.95537 0.85452 0.89092 1.24656 1.01241 0.97476 0.95531 1.69699 1.52323 1.35595 1.00276 0.86599 0.78564 0.86730 0.76958 1.20962 1.21716 1.20192 1.21473 0.94740 0.97670 0.83311 0.89302 1.22084 0.94533 1.02466 1.02311 1.45960 1.66416 1.13827 1.09608 1.17016 0.78078 0.86247 0.81726 1.90828 1.49987 1.14711 1.84260 1.24505 1.10240 0.99423 0.99157 1.20056 0.98462 1.01894 0.89759 1.19306 0.96924 0.91044 0.94665 1.21358 1.07834 1.00293 0.90369 1.21469 0.97122 0.83404 0.99696 1.43013 1.59006 1.11911 1.11603 0.74224 1.15743 0.78886 0.87511 0.81457 1.91013 1.53768 1.20304 1.76748 1.24170 1.16501 0.98467 1.00601 1.84206 1.59045 1.03440 1.00824 0.91911 0.94297 0.93377 0.80423 0.92997 0.93007 0.92351 0.90438 0.76790 0.82175 0.82934 0.81443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 9.33 37.16 0.35 -2.45 16 2 C 0.17 3.10 2.52 -67.93 -0.17 2.93 16 3 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 4 N -0.74 -16.66 4.23 -53.42 -0.23 -16.89 16 5 C -0.24 -6.59 10.41 -15.06 -0.16 -6.75 16 6 H 0.09 2.64 8.06 -52.49 -0.42 2.21 16 7 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 8 N -0.93 -28.73 13.97 55.49 0.78 -27.96 16 9 Si 0.88 21.75 27.74 -169.99 -4.71 17.04 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 13 C 0.13 2.09 2.20 -67.94 -0.15 1.94 16 14 H 0.09 1.52 7.58 -51.93 -0.39 1.13 16 15 C -0.16 -2.44 9.33 37.15 0.35 -2.10 16 16 N -0.71 -9.35 4.38 -54.93 -0.24 -9.59 16 17 C 0.59 8.04 7.77 -12.58 -0.10 7.94 16 18 O -0.52 -8.70 16.41 5.27 0.09 -8.61 16 19 C -0.21 -2.38 6.36 -37.31 -0.24 -2.62 16 20 C -0.07 -0.68 9.82 -40.50 -0.40 -1.08 16 21 C 0.00 -0.02 6.08 -105.09 -0.64 -0.66 16 22 C -0.17 -0.89 10.29 -37.16 -0.38 -1.27 16 23 C 0.11 0.36 11.11 -16.92 -0.19 0.17 16 24 N -0.62 -3.57 5.23 -14.86 -0.08 -3.64 16 25 H 0.42 1.35 8.87 -40.82 -0.36 0.99 16 26 C 0.57 5.93 7.71 -15.08 -0.12 5.82 16 27 O -0.54 -7.46 17.89 4.96 0.09 -7.37 16 28 C -0.28 -2.89 6.48 -37.76 -0.24 -3.13 16 29 S 0.25 2.65 22.27 -107.50 -2.39 0.25 16 30 H 0.06 1.16 8.14 -51.94 -0.42 0.73 16 31 H 0.04 0.54 7.44 -51.93 -0.39 0.15 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.36 8.14 5.44 -40.82 -0.22 7.92 16 34 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 1.33 7.44 -51.93 -0.39 0.95 16 38 H 0.40 4.48 7.46 -40.82 -0.30 4.18 16 39 H 0.16 1.42 7.98 -52.48 -0.42 1.00 16 40 H 0.15 0.39 8.06 -52.49 -0.42 -0.04 16 41 H 0.17 -0.17 8.06 -52.49 -0.42 -0.59 16 LS Contribution 363.11 15.07 5.47 5.47 Total: -1.00 -35.69 363.11 -8.43 -44.13 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -5.02 Total: 8.32 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -2.18 Total: -1.16 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: 0.23 Total: -58.08 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: 0.18 Total: -15.98 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.71 Total: 17.04 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -2.39 Total: 0.25 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.69 -8.43 -44.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674686978.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.004 kcal (2) G-P(sol) polarization free energy of solvation -35.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds