Wall clock time and date at job start Tue Mar 31 2020 19:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47031 * 2 1 4 4 N 1.46505 * 109.46897 * 119.99417 * 2 1 3 5 5 C 1.36936 * 120.00059 * 275.00467 * 4 2 1 6 6 H 1.07999 * 120.00160 * 359.97438 * 5 4 2 7 7 C 1.38821 * 119.99726 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99425 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00023 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46783 * 90.00381 * 9 7 5 11 11 H 1.48503 * 109.46998 * 210.00338 * 9 7 5 12 12 H 1.48492 * 109.47209 * 330.00664 * 9 7 5 13 13 C 1.52999 * 109.47733 * 239.99620 * 2 1 3 14 14 H 1.09004 * 109.46852 * 300.00612 * 13 2 1 15 15 C 1.52994 * 109.47355 * 180.02562 * 13 2 1 16 16 N 1.46497 * 109.46865 * 60.00030 * 13 2 1 17 17 C 1.34778 * 120.00036 * 205.00427 * 16 13 2 18 18 O 1.21612 * 119.99971 * 359.97438 * 17 16 13 19 19 C 1.47299 * 119.99993 * 179.97438 * 17 16 13 20 20 C 1.34222 * 124.78960 * 180.02562 * 19 17 16 21 21 C 1.39565 * 115.53172 * 179.97438 * 20 19 17 22 22 C 1.47756 * 129.59415 * 180.02562 * 21 20 19 23 23 C 1.34058 * 119.55460 * 179.97438 * 22 21 20 24 24 N 1.36560 * 121.42530 * 359.97438 * 23 22 21 25 25 H 0.97000 * 119.15517 * 179.97438 * 24 23 22 26 26 C 1.34294 * 121.67734 * 0.02562 * 24 23 22 27 27 O 1.21955 * 119.69033 * 180.02562 * 26 24 23 28 28 C 1.39383 * 112.90343 * 359.97438 * 21 20 19 29 29 S 1.75559 * 124.79216 * 359.97438 * 19 17 16 30 30 H 1.08989 * 109.47409 * 300.00255 * 1 2 3 31 31 H 1.08997 * 109.46375 * 60.00461 * 1 2 3 32 32 H 1.08998 * 109.47031 * 179.97438 * 1 2 3 33 33 H 0.96998 * 119.99838 * 95.00648 * 4 2 1 34 34 H 0.97007 * 119.99299 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.47221 * 180.02562 * 15 13 2 36 36 H 1.08998 * 109.47007 * 300.00133 * 15 13 2 37 37 H 1.08997 * 109.47300 * 59.99850 * 15 13 2 38 38 H 0.96998 * 120.00092 * 24.99910 * 16 13 2 39 39 H 1.08003 * 122.23544 * 359.96375 * 20 19 17 40 40 H 1.07997 * 120.22021 * 359.70258 * 22 21 20 41 41 H 1.08000 * 119.28885 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1490 -0.0073 2.3758 6 1 1.8925 1.0407 2.4242 7 6 2.6122 -0.6616 3.5092 8 7 2.7382 -0.0047 4.6428 9 14 3.0565 -2.4740 3.4254 10 1 4.4891 -2.6160 3.0611 11 1 2.8174 -3.1040 4.7487 12 1 2.2164 -3.1427 2.3997 13 6 2.0402 -0.7213 -1.2491 14 1 1.6768 -1.7490 -1.2491 15 6 3.5701 -0.7218 -1.2487 16 7 1.5519 -0.0308 -2.4453 17 6 1.4232 -0.7032 -3.6063 18 8 1.7129 -1.8830 -3.6609 19 6 0.9317 -0.0090 -4.8089 20 6 0.7665 -0.5831 -6.0108 21 6 0.2880 0.2564 -7.0178 22 6 -0.0042 -0.0442 -8.4347 23 6 -0.4636 0.9277 -9.2357 24 7 -0.6696 2.1952 -8.7712 25 1 -1.0027 2.8732 -9.3797 26 6 -0.4219 2.5272 -7.4937 27 8 -0.6194 3.6703 -7.1174 28 6 0.0663 1.5601 -6.5774 29 16 0.4781 1.6858 -4.8722 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2491 -1.6316 1.1528 34 1 3.0616 -0.4620 5.4349 35 1 3.9335 -1.2353 -2.1389 36 1 3.9338 0.3057 -1.2485 37 1 3.9331 -1.2358 -0.3587 38 1 1.3211 0.9104 -2.4018 39 1 0.9893 -1.6252 -6.1870 40 1 0.1555 -1.0390 -8.8234 41 1 -0.6761 0.7031 -10.2705 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674686978.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:52 Heat of formation + Delta-G solvation = -32.558606 kcal Electronic energy + Delta-G solvation = -25471.243951 eV Core-core repulsion = 21670.298147 eV Total energy + Delta-G solvation = -3800.945805 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.04484 -41.16637 -38.88655 -38.28093 -37.07417 -35.75151 -33.81388 -32.51757 -31.37145 -30.66567 -30.49721 -26.86072 -25.73309 -24.91338 -24.06992 -22.51174 -21.82437 -21.48922 -20.21822 -19.78627 -19.22226 -17.98556 -17.66561 -17.11294 -16.90888 -16.74576 -16.43215 -16.22599 -15.80502 -15.44691 -15.29892 -15.01105 -14.69235 -14.58387 -14.26218 -13.99145 -13.79882 -13.71939 -13.30622 -13.09047 -13.03489 -13.02319 -12.80631 -12.63888 -12.36265 -12.13131 -12.07298 -11.80994 -11.53475 -11.49559 -11.35112 -11.03383 -10.56660 -10.30067 -10.12333 -9.34061 -8.80211 -8.00677 -5.34545 -1.09648 0.07685 0.41468 0.65052 0.99168 1.40222 1.41502 1.48555 1.81382 1.90960 2.05272 2.46286 2.49405 3.30943 3.32205 3.54500 3.62495 3.67810 3.77570 3.82501 4.09945 4.23486 4.26201 4.50675 4.54469 4.63575 4.67336 4.79379 4.87951 4.93401 4.96617 5.01409 5.08060 5.22837 5.27183 5.35346 5.45042 5.75497 5.78629 5.88980 6.21916 6.26701 6.83722 6.91074 7.07761 7.82021 8.00690 9.20389 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.028357 B = 0.002383 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.187195 B =11749.498572 C =12408.536623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.170 3.830 3 H 0.061 0.939 4 N -0.744 5.744 5 C -0.221 4.221 6 H 0.062 0.938 7 C -0.061 4.061 8 N -0.982 5.982 9 Si 0.947 3.053 10 H -0.277 1.277 11 H -0.299 1.299 12 H -0.254 1.254 13 C 0.146 3.854 14 H 0.080 0.920 15 C -0.151 4.151 16 N -0.701 5.701 17 C 0.590 3.410 18 O -0.552 6.552 19 C -0.224 4.224 20 C -0.060 4.060 21 C 0.005 3.995 22 C -0.187 4.187 23 C 0.130 3.870 24 N -0.603 5.603 25 H 0.434 0.566 26 C 0.558 3.442 27 O -0.588 6.588 28 C -0.303 4.303 29 S 0.232 5.768 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.365 0.635 34 H 0.257 0.743 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.408 0.592 39 H 0.172 0.828 40 H 0.186 0.814 41 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.024 -0.338 -36.054 36.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.061 3.939 3 H 0.079 0.921 4 N -0.387 5.387 5 C -0.352 4.352 6 H 0.080 0.920 7 C -0.253 4.253 8 N -0.633 5.633 9 Si 0.775 3.225 10 H -0.204 1.204 11 H -0.226 1.226 12 H -0.179 1.179 13 C 0.041 3.959 14 H 0.098 0.902 15 C -0.210 4.210 16 N -0.352 5.352 17 C 0.376 3.624 18 O -0.432 6.432 19 C -0.346 4.346 20 C -0.094 4.094 21 C -0.012 4.012 22 C -0.211 4.211 23 C 0.006 3.994 24 N -0.239 5.239 25 H 0.274 0.726 26 C 0.354 3.646 27 O -0.473 6.473 28 C -0.423 4.423 29 S 0.502 5.498 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.199 0.801 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.244 0.756 39 H 0.189 0.811 40 H 0.203 0.797 41 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -6.893 0.807 -34.432 35.124 hybrid contribution 0.173 -1.260 -0.177 1.284 sum -6.719 -0.453 -34.608 35.257 Atomic orbital electron populations 1.22308 0.97127 1.01326 1.01097 1.20528 0.93145 0.95790 0.84430 0.92108 1.42607 1.80073 1.09446 1.06613 1.18949 1.34863 0.94467 0.86931 0.91993 1.25411 1.02486 1.02103 0.95282 1.69871 1.54698 1.37555 1.01148 0.85529 0.78717 0.81349 0.76927 1.20359 1.22583 1.17877 1.21099 0.94739 0.96929 0.83144 0.90194 1.22030 0.94365 1.02709 1.01868 1.45787 1.66282 1.14245 1.08910 1.17236 0.77217 0.85831 0.82136 1.90808 1.51488 1.16062 1.84846 1.24216 1.11830 0.99830 0.98690 1.20300 0.97176 1.02448 0.89458 1.19666 0.95345 0.89832 0.96323 1.21820 1.08407 1.02472 0.88427 1.22394 0.93869 0.81375 1.01716 1.43034 1.57095 1.13487 1.10269 0.72561 1.15895 0.78999 0.86850 0.82847 1.90982 1.56350 1.21997 1.77947 1.24283 1.18184 0.99501 1.00379 1.84171 1.60285 1.03040 1.02270 0.93926 0.91166 0.93534 0.80137 0.93440 0.92344 0.91795 0.91910 0.75584 0.81099 0.79689 0.75738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.23 9.33 71.98 0.67 -4.55 16 2 C 0.17 6.02 2.52 44.99 0.11 6.13 16 3 H 0.06 2.18 8.08 -2.39 -0.02 2.17 16 4 N -0.74 -33.21 4.23 -322.93 -1.37 -34.58 16 5 C -0.22 -12.17 10.41 84.04 0.87 -11.29 16 6 H 0.06 3.72 8.06 -2.91 -0.02 3.70 16 7 C -0.06 -3.56 5.50 84.86 0.47 -3.09 16 8 N -0.98 -62.38 13.97 21.65 0.30 -62.07 16 9 Si 0.95 45.27 27.74 68.60 1.90 47.17 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 12 H -0.25 -11.08 6.52 99.48 0.65 -10.43 16 13 C 0.15 4.47 2.20 44.99 0.10 4.57 16 14 H 0.08 2.66 7.58 -2.39 -0.02 2.64 16 15 C -0.15 -4.63 9.33 71.98 0.67 -3.96 16 16 N -0.70 -17.93 4.38 -445.94 -1.95 -19.88 16 17 C 0.59 15.70 7.77 86.63 0.67 16.37 16 18 O -0.55 -17.96 16.41 -4.07 -0.07 -18.02 16 19 C -0.22 -4.86 6.36 23.74 0.15 -4.71 16 20 C -0.06 -1.08 9.82 21.67 0.21 -0.87 16 21 C 0.00 0.07 6.08 -20.17 -0.12 -0.05 16 22 C -0.19 -1.07 10.29 23.84 0.25 -0.83 16 23 C 0.13 0.21 11.11 83.00 0.92 1.13 16 24 N -0.60 -5.03 5.23 -319.29 -1.67 -6.70 16 25 H 0.43 1.39 8.87 -92.71 -0.82 0.56 16 26 C 0.56 11.02 7.71 85.22 0.66 11.68 16 27 O -0.59 -16.50 17.89 -5.17 -0.09 -16.59 16 28 C -0.30 -6.04 6.48 23.45 0.15 -5.89 16 29 S 0.23 4.83 22.27 -56.49 -1.26 3.57 16 30 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 1.85 7.44 -2.39 -0.02 1.84 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.37 15.99 5.44 -92.71 -0.50 15.48 16 34 H 0.26 15.63 8.31 -92.70 -0.77 14.86 16 35 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.06 2.11 7.44 -2.39 -0.02 2.09 16 38 H 0.41 8.90 7.46 -92.71 -0.69 8.21 16 39 H 0.17 2.63 7.98 -2.91 -0.02 2.61 16 40 H 0.19 -0.12 8.06 -2.91 -0.02 -0.15 16 41 H 0.23 -2.15 8.06 -2.91 -0.02 -2.17 16 Total: -1.00 -81.22 363.11 0.62 -80.60 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: -0.97 Total: 21.85 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 5.79 Total: 4.65 kcal Atomic # 7 Polarization: -118.54 SS G_CDS: -4.69 Total: -123.23 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -0.16 Total: -34.62 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.90 Total: 47.17 kcal Atomic # 16 Polarization: 4.83 SS G_CDS: -1.26 Total: 3.57 kcal Total: -81.22 0.62 -80.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674686978.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.040 kcal (2) G-P(sol) polarization free energy of solvation -81.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds