Wall clock time and date at job start Tue Mar 31 2020 19:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47497 * 2 1 4 4 N 1.46507 * 109.47235 * 119.99931 * 2 1 3 5 5 C 1.34777 * 119.99542 * 275.00190 * 4 2 1 6 6 O 1.21611 * 120.00324 * 359.97438 * 5 4 2 7 7 C 1.47296 * 119.99693 * 180.02562 * 5 4 2 8 8 C 1.34216 * 124.79316 * 179.72306 * 7 5 4 9 9 C 1.39563 * 115.53711 * 179.85446 * 8 7 5 10 10 C 1.47750 * 129.60195 * 180.16799 * 9 8 7 11 11 C 1.34059 * 119.55972 * 180.26376 * 10 9 8 12 12 N 1.36556 * 121.42803 * 0.02562 * 11 10 9 13 13 H 0.97000 * 119.16504 * 179.97438 * 12 11 10 14 14 C 1.34304 * 121.67384 * 359.95848 * 12 11 10 15 15 O 1.21951 * 119.68913 * 180.02562 * 14 12 11 16 16 C 1.39397 * 112.90114 * 0.41934 * 9 8 7 17 17 S 1.75570 * 124.79223 * 0.02562 * 7 5 4 18 18 C 1.53002 * 109.47415 * 239.99648 * 2 1 3 19 19 H 1.09002 * 109.47070 * 300.00053 * 18 2 1 20 20 C 1.53000 * 109.47233 * 179.97438 * 18 2 1 21 21 N 1.46499 * 109.46799 * 60.00153 * 18 2 1 22 22 C 1.36940 * 119.99991 * 205.00357 * 21 18 2 23 23 H 1.07998 * 119.99825 * 359.97438 * 22 21 18 24 24 C 1.38811 * 120.00230 * 180.02562 * 22 21 18 25 25 N 1.31613 * 119.99954 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00007 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47017 * 59.99561 * 26 24 22 28 28 H 1.48501 * 109.46738 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47076 * 299.99387 * 26 24 22 30 30 H 1.08998 * 109.47171 * 299.99624 * 1 2 3 31 31 H 1.09000 * 109.47140 * 60.00376 * 1 2 3 32 32 H 1.09002 * 109.47045 * 180.02562 * 1 2 3 33 33 H 0.96997 * 120.00022 * 95.00053 * 4 2 1 34 34 H 1.08004 * 122.23358 * 0.03189 * 8 7 5 35 35 H 1.08001 * 120.22028 * 0.24404 * 10 9 8 36 36 H 1.08003 * 119.28564 * 179.97438 * 11 10 9 37 37 H 1.09001 * 109.47194 * 179.97438 * 20 18 2 38 38 H 1.08992 * 109.47399 * 300.00166 * 20 18 2 39 39 H 1.09004 * 109.46724 * 60.00652 * 20 18 2 40 40 H 0.97002 * 120.00410 * 24.99527 * 21 18 2 41 41 H 0.97001 * 120.00026 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8582 1.1619 2.4116 7 6 2.6386 -0.7123 3.5597 8 6 2.8083 -0.1371 4.7604 9 6 3.2824 -0.9777 5.7686 10 6 3.5741 -0.6775 7.1856 11 6 4.0334 -1.6494 7.9866 12 7 4.2399 -2.9168 7.5220 13 1 4.5736 -3.5947 8.1303 14 6 3.9924 -3.2486 6.2444 15 8 4.1894 -4.3919 5.8682 16 6 3.5040 -2.2816 5.3282 17 16 3.0923 -2.4072 3.6229 18 6 2.0401 -0.7213 -1.2492 19 1 1.6767 -1.7490 -1.2491 20 6 3.5701 -0.7207 -1.2495 21 7 1.5517 -0.0307 -2.4454 22 6 1.4209 -0.7139 -3.6249 23 1 1.6781 -1.7617 -3.6735 24 6 0.9588 -0.0595 -4.7585 25 7 0.6458 1.2175 -4.6995 26 14 0.7810 -0.9913 -6.3677 27 1 -0.1743 -2.1137 -6.1869 28 1 0.2720 -0.0729 -7.4178 29 1 2.1035 -1.5280 -6.7776 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2491 -1.6317 1.1527 34 1 2.5897 0.9059 4.9356 35 1 3.4185 0.3184 7.5734 36 1 4.2455 -1.4249 9.0215 37 1 3.9334 -1.2350 -2.1392 38 1 3.9330 0.3070 -1.2497 39 1 3.9337 -1.2344 -0.3595 40 1 1.3210 0.9104 -2.4019 41 1 0.3225 1.6748 -5.4915 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674686979.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:56 Heat of formation + Delta-G solvation = -10.191052 kcal Electronic energy + Delta-G solvation = -25399.430321 eV Core-core repulsion = 21599.454446 eV Total energy + Delta-G solvation = -3799.975875 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.37743 -39.94089 -37.91810 -36.91118 -36.26316 -34.04358 -32.09077 -31.49005 -30.27120 -29.44463 -28.42104 -25.96020 -24.19067 -24.00421 -22.90940 -21.52347 -20.63330 -20.15371 -19.36391 -18.40190 -17.48632 -17.14060 -16.87842 -16.01664 -15.97537 -15.69558 -15.09186 -14.80814 -14.57296 -14.34733 -13.86227 -13.68304 -13.48054 -13.20712 -13.13202 -12.92533 -12.45652 -12.42181 -12.39213 -11.90621 -11.73452 -11.30839 -11.22631 -10.99038 -10.83905 -10.72003 -10.69586 -10.26513 -10.15616 -9.93798 -9.83198 -9.70079 -9.33524 -9.09135 -8.85596 -8.17809 -7.01814 -5.79280 -3.09218 -0.29200 0.86763 0.97675 1.42838 1.77169 2.59480 2.94268 2.99906 3.14984 3.42851 3.47706 3.48380 4.00880 4.15997 4.47518 4.50565 4.58542 4.72354 5.09618 5.23042 5.32425 5.45923 5.50541 5.61184 5.64952 5.70168 5.77845 5.84946 6.07159 6.11225 6.19654 6.33360 6.37666 6.45676 6.46405 6.55895 6.77482 6.86525 6.98986 7.44840 7.48255 7.66670 8.08751 8.38078 9.49650 10.03889 10.39211 11.42897 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.027623 B = 0.002282 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.415874 B =12269.397936 C =12954.083975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.135 3.865 3 H 0.090 0.910 4 N -0.708 5.708 5 C 0.584 3.416 6 O -0.519 6.519 7 C -0.209 4.209 8 C -0.070 4.070 9 C -0.002 4.002 10 C -0.173 4.173 11 C 0.106 3.894 12 N -0.618 5.618 13 H 0.419 0.581 14 C 0.570 3.430 15 O -0.539 6.539 16 C -0.277 4.277 17 S 0.252 5.748 18 C 0.168 3.832 19 H 0.052 0.948 20 C -0.166 4.166 21 N -0.717 5.717 22 C -0.240 4.240 23 H 0.070 0.930 24 C -0.011 4.011 25 N -0.931 5.931 26 Si 0.908 3.092 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.396 0.604 34 H 0.161 0.839 35 H 0.153 0.847 36 H 0.168 0.832 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.035 0.965 40 H 0.386 0.614 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.649 -5.316 28.716 29.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.031 3.969 3 H 0.108 0.892 4 N -0.358 5.358 5 C 0.368 3.632 6 O -0.397 6.397 7 C -0.331 4.331 8 C -0.103 4.103 9 C -0.019 4.019 10 C -0.198 4.198 11 C -0.018 4.018 12 N -0.255 5.255 13 H 0.257 0.743 14 C 0.364 3.636 15 O -0.419 6.419 16 C -0.398 4.398 17 S 0.522 5.478 18 C 0.057 3.943 19 H 0.070 0.930 20 C -0.226 4.226 21 N -0.359 5.359 22 C -0.371 4.371 23 H 0.088 0.912 24 C -0.207 4.207 25 N -0.578 5.578 26 Si 0.738 3.262 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.230 0.770 34 H 0.179 0.821 35 H 0.171 0.829 36 H 0.185 0.815 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.220 0.780 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.474 -6.373 27.033 28.519 hybrid contribution 0.123 0.336 0.463 0.585 sum 6.598 -6.037 27.496 28.914 Atomic orbital electron populations 1.22069 0.94512 1.02027 1.02588 1.21473 0.94730 0.97680 0.82983 0.89202 1.46018 1.66336 1.13726 1.09734 1.17019 0.78205 0.86288 0.81736 1.90834 1.49949 1.14655 1.84222 1.24544 1.09995 0.99295 0.99255 1.20060 0.98539 1.01910 0.89772 1.19312 0.96903 0.91039 0.94639 1.21362 1.07769 1.00277 0.90387 1.21464 0.97181 0.83416 0.99696 1.43012 1.59009 1.11927 1.11595 0.74253 1.15745 0.78869 0.87504 0.81450 1.91007 1.53853 1.20311 1.76768 1.24162 1.16600 0.98482 1.00586 1.84185 1.59101 1.03655 1.00835 1.20399 0.92209 0.95642 0.86018 0.93018 1.22469 0.98955 1.01233 0.99962 1.42269 1.78229 1.10675 1.04732 1.19137 1.37051 0.93870 0.87056 0.91176 1.24741 1.01967 0.95971 0.98056 1.69648 1.50497 1.08611 1.29080 0.86267 0.77768 0.78591 0.83524 1.21259 1.21712 1.21284 0.93293 0.89770 0.92895 0.77003 0.82142 0.82928 0.81460 0.92434 0.93269 0.94649 0.77997 0.93378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.33 37.16 0.35 -2.26 16 2 C 0.14 2.28 2.21 -67.93 -0.15 2.13 16 3 H 0.09 1.67 7.58 -51.93 -0.39 1.28 16 4 N -0.71 -9.91 4.38 -54.92 -0.24 -10.15 16 5 C 0.58 8.45 7.77 -12.58 -0.10 8.35 16 6 O -0.52 -9.13 16.41 5.27 0.09 -9.04 16 7 C -0.21 -2.47 6.36 -37.32 -0.24 -2.71 16 8 C -0.07 -0.72 9.82 -40.51 -0.40 -1.12 16 9 C 0.00 -0.02 6.08 -105.08 -0.64 -0.66 16 10 C -0.17 -0.94 10.29 -37.17 -0.38 -1.32 16 11 C 0.11 0.39 11.11 -16.92 -0.19 0.20 16 12 N -0.62 -3.71 5.23 -14.85 -0.08 -3.79 16 13 H 0.42 1.43 8.87 -40.82 -0.36 1.07 16 14 C 0.57 6.08 7.71 -15.08 -0.12 5.96 16 15 O -0.54 -7.58 17.89 4.96 0.09 -7.49 16 16 C -0.28 -2.99 6.48 -37.76 -0.24 -3.23 16 17 S 0.25 2.72 22.27 -107.50 -2.39 0.33 16 18 C 0.17 3.17 2.52 -67.93 -0.17 3.00 16 19 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 20 C -0.17 -2.92 9.33 37.16 0.35 -2.57 16 21 N -0.72 -17.16 4.43 -53.42 -0.24 -17.39 16 22 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 23 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 24 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 25 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 26 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.62 7.45 -51.93 -0.39 1.23 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.40 4.74 7.46 -40.82 -0.30 4.43 16 34 H 0.16 1.50 7.98 -52.48 -0.42 1.08 16 35 H 0.15 0.43 8.06 -52.49 -0.42 0.01 16 36 H 0.17 -0.13 8.06 -52.48 -0.42 -0.55 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.03 0.51 7.45 -51.93 -0.39 0.13 16 40 H 0.39 9.92 7.58 -40.82 -0.31 9.61 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 366.23 15.07 5.52 5.52 Total: -1.00 -34.65 366.23 -8.79 -43.44 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -5.06 Total: 9.57 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -2.18 Total: -1.21 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: 0.17 Total: -58.14 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: 0.18 Total: -16.53 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -2.39 Total: 0.33 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.65 -8.79 -43.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674686979.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.251 kcal (2) G-P(sol) polarization free energy of solvation -34.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds