Wall clock time and date at job start Tue Mar 31 2020 19:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47497 * 2 1 4 4 N 1.46507 * 109.47235 * 119.99931 * 2 1 3 5 5 C 1.34777 * 119.99542 * 275.00190 * 4 2 1 6 6 O 1.21611 * 120.00324 * 359.97438 * 5 4 2 7 7 C 1.47296 * 119.99693 * 180.02562 * 5 4 2 8 8 C 1.34216 * 124.79316 * 179.72306 * 7 5 4 9 9 C 1.39563 * 115.53711 * 179.85446 * 8 7 5 10 10 C 1.47750 * 129.60195 * 180.16799 * 9 8 7 11 11 C 1.34059 * 119.55972 * 180.26376 * 10 9 8 12 12 N 1.36556 * 121.42803 * 0.02562 * 11 10 9 13 13 H 0.97000 * 119.16504 * 179.97438 * 12 11 10 14 14 C 1.34304 * 121.67384 * 359.95848 * 12 11 10 15 15 O 1.21951 * 119.68913 * 180.02562 * 14 12 11 16 16 C 1.39397 * 112.90114 * 0.41934 * 9 8 7 17 17 S 1.75570 * 124.79223 * 0.02562 * 7 5 4 18 18 C 1.53002 * 109.47415 * 239.99648 * 2 1 3 19 19 H 1.09002 * 109.47070 * 300.00053 * 18 2 1 20 20 C 1.53000 * 109.47233 * 179.97438 * 18 2 1 21 21 N 1.46499 * 109.46799 * 60.00153 * 18 2 1 22 22 C 1.36940 * 119.99991 * 205.00357 * 21 18 2 23 23 H 1.07998 * 119.99825 * 359.97438 * 22 21 18 24 24 C 1.38811 * 120.00230 * 180.02562 * 22 21 18 25 25 N 1.31613 * 119.99954 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00007 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47017 * 59.99561 * 26 24 22 28 28 H 1.48501 * 109.46738 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47076 * 299.99387 * 26 24 22 30 30 H 1.08998 * 109.47171 * 299.99624 * 1 2 3 31 31 H 1.09000 * 109.47140 * 60.00376 * 1 2 3 32 32 H 1.09002 * 109.47045 * 180.02562 * 1 2 3 33 33 H 0.96997 * 120.00022 * 95.00053 * 4 2 1 34 34 H 1.08004 * 122.23358 * 0.03189 * 8 7 5 35 35 H 1.08001 * 120.22028 * 0.24404 * 10 9 8 36 36 H 1.08003 * 119.28564 * 179.97438 * 11 10 9 37 37 H 1.09001 * 109.47194 * 179.97438 * 20 18 2 38 38 H 1.08992 * 109.47399 * 300.00166 * 20 18 2 39 39 H 1.09004 * 109.46724 * 60.00652 * 20 18 2 40 40 H 0.97002 * 120.00410 * 24.99527 * 21 18 2 41 41 H 0.97001 * 120.00026 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8582 1.1619 2.4116 7 6 2.6386 -0.7123 3.5597 8 6 2.8083 -0.1371 4.7604 9 6 3.2824 -0.9777 5.7686 10 6 3.5741 -0.6775 7.1856 11 6 4.0334 -1.6494 7.9866 12 7 4.2399 -2.9168 7.5220 13 1 4.5736 -3.5947 8.1303 14 6 3.9924 -3.2486 6.2444 15 8 4.1894 -4.3919 5.8682 16 6 3.5040 -2.2816 5.3282 17 16 3.0923 -2.4072 3.6229 18 6 2.0401 -0.7213 -1.2492 19 1 1.6767 -1.7490 -1.2491 20 6 3.5701 -0.7207 -1.2495 21 7 1.5517 -0.0307 -2.4454 22 6 1.4209 -0.7139 -3.6249 23 1 1.6781 -1.7617 -3.6735 24 6 0.9588 -0.0595 -4.7585 25 7 0.6458 1.2175 -4.6995 26 14 0.7810 -0.9913 -6.3677 27 1 -0.1743 -2.1137 -6.1869 28 1 0.2720 -0.0729 -7.4178 29 1 2.1035 -1.5280 -6.7776 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2491 -1.6317 1.1527 34 1 2.5897 0.9059 4.9356 35 1 3.4185 0.3184 7.5734 36 1 4.2455 -1.4249 9.0215 37 1 3.9334 -1.2350 -2.1392 38 1 3.9330 0.3070 -1.2497 39 1 3.9337 -1.2344 -0.3595 40 1 1.3210 0.9104 -2.4019 41 1 0.3225 1.6748 -5.4915 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674686979.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:55 Heat of formation + Delta-G solvation = -35.303031 kcal Electronic energy + Delta-G solvation = -25400.519258 eV Core-core repulsion = 21599.454446 eV Total energy + Delta-G solvation = -3801.064812 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.04045 -41.14459 -38.83899 -38.20599 -37.06290 -35.68382 -33.69123 -32.43402 -31.21316 -30.57198 -30.16450 -26.85156 -25.92213 -24.92555 -24.14156 -22.55208 -21.75257 -21.41910 -20.09671 -19.44007 -19.21190 -17.94060 -17.65186 -17.02007 -16.90810 -16.73295 -16.50833 -16.20682 -15.59648 -15.46441 -15.25469 -14.98584 -14.78227 -14.58123 -14.11661 -13.87668 -13.77596 -13.47699 -13.23889 -13.03635 -13.01750 -12.93104 -12.71866 -12.61595 -12.30354 -12.20563 -12.09963 -11.75091 -11.51509 -11.49132 -11.32189 -10.98004 -10.55880 -10.28032 -10.11474 -9.02026 -8.79704 -7.91520 -5.20621 -1.09434 0.07791 0.41792 0.65090 0.99601 1.49468 1.51782 1.57561 1.83506 1.91827 2.05727 2.46625 2.59043 3.34820 3.42228 3.55123 3.69195 3.77653 3.82436 3.99403 4.15522 4.24067 4.31929 4.51281 4.56535 4.64287 4.71630 4.84672 4.91057 4.94513 4.99617 5.02793 5.09908 5.23285 5.29383 5.41080 5.48341 5.55445 5.75939 5.89263 6.28497 6.28951 6.84139 6.93510 7.35918 8.07967 8.32138 9.31490 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.027623 B = 0.002282 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.415874 B =12269.397936 C =12954.083975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.150 3.850 3 H 0.071 0.929 4 N -0.700 5.700 5 C 0.588 3.412 6 O -0.555 6.555 7 C -0.224 4.224 8 C -0.061 4.061 9 C 0.005 3.995 10 C -0.187 4.187 11 C 0.131 3.869 12 N -0.602 5.602 13 H 0.434 0.566 14 C 0.559 3.441 15 O -0.587 6.587 16 C -0.303 4.303 17 S 0.234 5.766 18 C 0.167 3.833 19 H 0.060 0.940 20 C -0.157 4.157 21 N -0.728 5.728 22 C -0.234 4.234 23 H 0.079 0.921 24 C -0.075 4.075 25 N -0.968 5.968 26 Si 0.971 3.029 27 H -0.278 1.278 28 H -0.299 1.299 29 H -0.280 1.280 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.408 0.592 34 H 0.170 0.830 35 H 0.185 0.815 36 H 0.227 0.773 37 H 0.045 0.955 38 H 0.037 0.963 39 H 0.068 0.932 40 H 0.373 0.627 41 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.623 -6.160 32.041 33.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.045 3.955 3 H 0.089 0.911 4 N -0.351 5.351 5 C 0.373 3.627 6 O -0.435 6.435 7 C -0.346 4.346 8 C -0.095 4.095 9 C -0.012 4.012 10 C -0.212 4.212 11 C 0.007 3.993 12 N -0.239 5.239 13 H 0.275 0.725 14 C 0.355 3.645 15 O -0.472 6.472 16 C -0.423 4.423 17 S 0.505 5.495 18 C 0.058 3.942 19 H 0.078 0.922 20 C -0.217 4.217 21 N -0.369 5.369 22 C -0.366 4.366 23 H 0.097 0.903 24 C -0.267 4.267 25 N -0.619 5.619 26 Si 0.800 3.200 27 H -0.204 1.204 28 H -0.226 1.226 29 H -0.206 1.206 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.244 0.756 34 H 0.188 0.812 35 H 0.203 0.797 36 H 0.243 0.757 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.086 0.914 40 H 0.206 0.794 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.484 -7.274 30.429 32.169 hybrid contribution -0.113 0.610 -0.286 0.683 sum 7.371 -6.664 30.144 31.739 Atomic orbital electron populations 1.21953 0.94575 1.02343 1.01467 1.21048 0.94520 0.96624 0.83311 0.91128 1.45798 1.66201 1.14180 1.08904 1.17292 0.77276 0.85854 0.82237 1.90813 1.51559 1.16206 1.84874 1.24211 1.11783 0.99927 0.98635 1.20300 0.97220 1.02435 0.89521 1.19658 0.95381 0.89838 0.96296 1.21814 1.08444 1.02475 0.88421 1.22388 0.93818 0.81373 1.01707 1.43029 1.57079 1.13489 1.10258 0.72531 1.15876 0.78990 0.86827 0.82831 1.90978 1.56355 1.21938 1.77946 1.24289 1.18169 0.99494 1.00376 1.84111 1.60233 1.02906 1.02254 1.20555 0.92967 0.95628 0.85071 0.92182 1.22326 0.97554 1.00821 1.00989 1.42419 1.78467 1.10256 1.05718 1.19524 1.34965 0.94229 0.87883 0.90340 1.25516 1.03015 0.96830 1.01333 1.69811 1.52483 1.10166 1.29417 0.85256 0.77875 0.77301 0.79575 1.20384 1.22570 1.20577 0.92847 0.92372 0.91802 0.75590 0.81240 0.79749 0.75702 0.93601 0.94399 0.91357 0.79433 0.94138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.00 9.33 71.98 0.67 -4.33 16 2 C 0.15 5.10 2.21 44.99 0.10 5.20 16 3 H 0.07 2.72 7.58 -2.39 -0.02 2.70 16 4 N -0.70 -19.40 4.38 -445.92 -1.95 -21.36 16 5 C 0.59 16.96 7.77 86.63 0.67 17.64 16 6 O -0.55 -19.68 16.41 -4.07 -0.07 -19.74 16 7 C -0.22 -5.19 6.36 23.74 0.15 -5.04 16 8 C -0.06 -1.18 9.82 21.67 0.21 -0.97 16 9 C 0.00 0.08 6.08 -20.16 -0.12 -0.05 16 10 C -0.19 -1.21 10.29 23.83 0.25 -0.96 16 11 C 0.13 0.27 11.11 83.00 0.92 1.19 16 12 N -0.60 -5.21 5.23 -319.29 -1.67 -6.88 16 13 H 0.43 1.47 8.87 -92.71 -0.82 0.64 16 14 C 0.56 11.21 7.71 85.22 0.66 11.86 16 15 O -0.59 -16.54 17.89 -5.16 -0.09 -16.64 16 16 C -0.30 -6.21 6.48 23.45 0.15 -6.06 16 17 S 0.23 5.05 22.27 -56.49 -1.26 3.79 16 18 C 0.17 6.28 2.52 44.99 0.11 6.39 16 19 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 20 C -0.16 -5.44 9.33 71.98 0.67 -4.76 16 21 N -0.73 -35.46 4.43 -322.94 -1.43 -36.89 16 22 C -0.23 -12.58 9.93 84.03 0.83 -11.75 16 23 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 24 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 25 N -0.97 -58.82 13.06 21.65 0.28 -58.53 16 26 Si 0.97 45.76 29.55 68.60 2.03 47.79 16 27 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 28 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 29 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 30 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.06 2.31 7.45 -2.39 -0.02 2.30 16 32 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.41 9.47 7.46 -92.71 -0.69 8.78 16 34 H 0.17 2.89 7.98 -2.91 -0.02 2.87 16 35 H 0.19 0.04 8.06 -2.91 -0.02 0.01 16 36 H 0.23 -2.06 8.06 -2.91 -0.02 -2.08 16 37 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.07 1.90 7.45 -2.39 -0.02 1.88 16 40 H 0.37 19.91 7.58 -92.71 -0.70 19.21 16 41 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -78.57 366.23 0.48 -78.09 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: -1.11 Total: 25.75 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 5.75 Total: 4.62 kcal Atomic # 7 Polarization: -118.89 SS G_CDS: -4.77 Total: -123.66 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -0.16 Total: -36.38 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Atomic # 16 Polarization: 5.05 SS G_CDS: -1.26 Total: 3.79 kcal Total: -78.57 0.48 -78.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674686979.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.787 kcal (2) G-P(sol) polarization free energy of solvation -78.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds