Wall clock time and date at job start Tue Mar 31 2020 19:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47361 * 2 1 4 4 C 1.53008 * 109.47053 * 119.99820 * 2 1 3 5 5 N 1.46495 * 109.47007 * 174.99971 * 4 2 1 6 6 C 1.46505 * 120.00055 * 89.99660 * 5 4 2 7 7 C 1.34777 * 120.00254 * 269.99959 * 5 4 2 8 8 O 1.21494 * 119.99746 * 5.02899 * 7 5 4 9 9 C 1.48346 * 120.00126 * 185.03198 * 7 5 4 10 10 C 1.41707 * 126.81120 * 186.10484 * 9 7 5 11 11 C 1.37158 * 103.79918 * 179.86204 * 10 9 7 12 12 C 1.47020 * 126.86109 * 180.10027 * 11 10 9 13 13 C 1.36203 * 125.33551 * 180.02562 * 12 11 10 14 14 C 1.37717 * 114.43940 * 179.78851 * 13 12 11 15 15 C 1.33726 * 115.19399 * 0.49840 * 14 13 12 16 16 S 1.75823 * 109.96236 * 359.72867 * 15 14 13 17 17 O 1.34574 * 106.28098 * 0.39898 * 11 10 9 18 18 N 1.20872 * 111.69430 * 359.73137 * 17 11 10 19 19 N 1.46494 * 109.47226 * 239.99539 * 2 1 3 20 20 C 1.36937 * 120.00003 * 84.99760 * 19 2 1 21 21 H 1.07997 * 120.00008 * 0.02562 * 20 19 2 22 22 C 1.38817 * 120.00448 * 180.02562 * 20 19 2 23 23 N 1.31622 * 119.99289 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00297 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47107 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47082 * 120.00010 * 24 22 20 27 27 H 1.48500 * 109.46550 * 240.00042 * 24 22 20 28 28 H 1.09001 * 109.47245 * 299.99914 * 1 2 3 29 29 H 1.09000 * 109.47522 * 60.00570 * 1 2 3 30 30 H 1.09006 * 109.47580 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46853 * 295.00154 * 4 2 1 32 32 H 1.08994 * 109.46961 * 55.00188 * 4 2 1 33 33 H 1.09000 * 109.46710 * 95.31942 * 6 5 4 34 34 H 1.08998 * 109.47067 * 215.31662 * 6 5 4 35 35 H 1.08998 * 109.46980 * 335.32179 * 6 5 4 36 36 H 1.07999 * 128.09844 * 359.97438 * 10 9 7 37 37 H 1.08001 * 122.77785 * 359.97190 * 13 12 11 38 38 H 1.08003 * 122.40114 * 180.22905 * 14 13 12 39 39 H 1.08006 * 125.02181 * 179.76243 * 15 14 13 40 40 H 0.96999 * 120.00728 * 265.00437 * 19 2 1 41 41 H 0.97002 * 119.99486 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.4999 -0.8264 1.1907 6 6 4.3343 0.2341 1.7613 7 6 4.0757 -1.8987 0.6117 8 8 3.3874 -2.7328 0.0581 9 6 5.5498 -2.0604 0.6505 10 6 6.3122 -3.0574 -0.0076 11 6 7.6054 -2.7657 0.3443 12 6 8.8163 -3.4905 -0.0676 13 6 10.0883 -3.1732 0.3018 14 6 11.0558 -4.0080 -0.2117 15 6 10.6017 -4.9898 -0.9979 16 16 8.8501 -4.8989 -1.1207 17 8 7.5438 -1.6876 1.1474 18 7 6.4057 -1.3125 1.3054 19 7 2.0183 -0.6907 -1.1961 20 6 2.1490 -0.0076 -2.3757 21 1 1.8925 1.0403 -2.4242 22 6 2.6113 -0.6622 -3.5093 23 7 2.9234 -1.9395 -3.4502 24 14 2.7903 0.2698 -5.1182 25 1 2.3763 1.6821 -4.9209 26 1 4.2071 0.2259 -5.5606 27 1 1.9291 -0.3582 -6.1523 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.7515 -0.1583 2.1370 32 1 1.6054 -1.7197 1.2952 33 1 4.6207 -0.0362 2.7776 34 1 5.2297 0.3591 1.1525 35 1 3.7731 1.1684 1.7782 36 1 5.9580 -3.8581 -0.6398 37 1 10.3188 -2.3380 0.9465 38 1 12.1063 -3.8764 0.0016 39 1 11.2195 -5.7297 -1.4851 40 1 2.2490 -1.6318 -1.1526 41 1 3.2460 -2.3970 -4.2424 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676398174.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:13 Heat of formation + Delta-G solvation = 94.564887 kcal Electronic energy + Delta-G solvation = -26492.140638 eV Core-core repulsion = 22696.707321 eV Total energy + Delta-G solvation = -3795.433316 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -44.88694 -39.41917 -37.94205 -36.01518 -34.54940 -33.79549 -32.76627 -31.79623 -28.85261 -28.57892 -27.00736 -26.22359 -24.77951 -23.79971 -23.30924 -22.47940 -20.57795 -19.65512 -18.77149 -18.15488 -17.71475 -17.20068 -16.76206 -16.22323 -15.70624 -15.34048 -15.10525 -14.51661 -14.05134 -13.70410 -13.44236 -13.41857 -13.33046 -12.98278 -12.85352 -12.70418 -12.64148 -12.26749 -12.13329 -11.94112 -11.43178 -11.33121 -11.13927 -11.00281 -10.79489 -10.62401 -10.39197 -10.37646 -10.20166 -9.98815 -9.68759 -9.43642 -8.80813 -8.76831 -8.40451 -8.13374 -6.77678 -5.58630 -2.88019 0.18887 1.12229 1.42414 1.68089 1.89544 2.63832 3.02407 3.18669 3.48438 3.53760 3.55998 3.66817 4.09821 4.35399 4.68982 4.77158 4.93355 5.13161 5.22653 5.25204 5.32833 5.44707 5.51045 5.60399 5.67239 5.74288 5.86352 5.90582 6.01314 6.02216 6.05768 6.10694 6.12792 6.29727 6.40556 6.70713 6.82588 6.93933 7.16006 7.69335 7.81524 8.05211 8.53450 8.63541 9.70931 10.33955 10.73383 11.61772 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011635 B = 0.003717 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.030025 B = 7530.762133 C = 9104.851640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.153 3.847 3 H 0.044 0.956 4 C 0.111 3.889 5 N -0.594 5.594 6 C 0.085 3.915 7 C 0.599 3.401 8 O -0.490 6.490 9 C 0.003 3.997 10 C -0.153 4.153 11 C 0.027 3.973 12 C -0.132 4.132 13 C -0.108 4.108 14 C -0.136 4.136 15 C -0.216 4.216 16 S 0.183 5.817 17 O 0.123 5.877 18 N -0.330 5.330 19 N -0.722 5.722 20 C -0.238 4.238 21 H 0.065 0.935 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.897 3.103 25 H -0.282 1.282 26 H -0.294 1.294 27 H -0.292 1.292 28 H 0.035 0.965 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.184 0.816 37 H 0.149 0.851 38 H 0.145 0.855 39 H 0.170 0.830 40 H 0.399 0.601 41 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.635 -3.684 12.154 19.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.042 3.958 3 H 0.062 0.938 4 C -0.012 4.012 5 N -0.327 5.327 6 C -0.058 4.058 7 C 0.383 3.617 8 O -0.361 6.361 9 C -0.154 4.154 10 C -0.176 4.176 11 C -0.038 4.038 12 C -0.251 4.251 13 C -0.140 4.140 14 C -0.166 4.166 15 C -0.352 4.352 16 S 0.448 5.552 17 O 0.048 5.952 18 N -0.032 5.032 19 N -0.369 5.369 20 C -0.370 4.370 21 H 0.083 0.917 22 C -0.209 4.209 23 N -0.567 5.567 24 Si 0.729 3.271 25 H -0.207 1.207 26 H -0.221 1.221 27 H -0.220 1.220 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.201 0.799 37 H 0.167 0.833 38 H 0.163 0.837 39 H 0.187 0.813 40 H 0.239 0.761 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 12.957 -3.844 11.735 17.898 hybrid contribution 1.189 0.639 -0.872 1.607 sum 14.146 -3.206 10.862 18.121 Atomic orbital electron populations 1.22408 0.98969 1.01030 0.99993 1.20657 0.92141 0.95610 0.87434 0.93835 1.21947 0.78200 1.02364 0.98656 1.47384 1.07115 1.20367 1.57821 1.21856 0.95521 0.90223 0.98200 1.16707 0.83569 0.82486 0.78924 1.90797 1.61751 1.42904 1.40634 1.23376 0.96825 0.95428 0.99800 1.22693 0.89729 1.02105 1.03121 1.21166 0.93229 0.91360 0.98025 1.21832 0.93050 1.02500 1.07708 1.20693 0.90134 1.01403 1.01769 1.19997 1.01046 0.95773 0.99774 1.25968 0.97937 1.05013 1.06322 1.84537 1.02847 1.23429 1.44339 1.84880 1.23854 1.35778 1.50645 1.74291 0.89466 1.19551 1.19938 1.42810 1.77629 1.11872 1.04610 1.19245 1.36438 0.93634 0.87670 0.91720 1.24724 1.02566 0.95920 0.97668 1.69761 1.50588 1.08297 1.28063 0.86257 0.77185 0.78837 0.84803 1.20748 1.22126 1.21964 0.94577 0.92570 0.93314 0.90603 0.90114 0.92882 0.90593 0.91118 0.79915 0.83329 0.83704 0.81276 0.76118 0.93911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 9.49 37.15 0.35 -2.69 16 2 C 0.15 3.19 3.20 -67.93 -0.22 2.98 16 3 H 0.04 0.91 8.08 -51.93 -0.42 0.49 16 4 C 0.11 1.96 5.11 -4.04 -0.02 1.94 16 5 N -0.59 -10.93 2.77 -182.50 -0.51 -11.44 16 6 C 0.09 1.27 9.34 59.85 0.56 1.83 16 7 C 0.60 12.61 7.11 -12.10 -0.09 12.52 16 8 O -0.49 -12.01 14.01 5.37 0.08 -11.93 16 9 C 0.00 0.06 6.78 -82.66 -0.56 -0.50 16 10 C -0.15 -2.60 10.78 -38.65 -0.42 -3.02 16 11 C 0.03 0.39 7.28 -36.42 -0.26 0.12 16 12 C -0.13 -1.58 6.45 -36.76 -0.24 -1.82 16 13 C -0.11 -1.04 10.17 -40.50 -0.41 -1.46 16 14 C -0.14 -1.09 10.15 -41.35 -0.42 -1.50 16 15 C -0.22 -1.72 11.21 29.15 0.33 -1.39 16 16 S 0.18 1.90 23.11 -107.50 -2.48 -0.58 16 17 O 0.12 1.81 11.21 15.74 0.18 1.99 16 18 N -0.33 -5.39 8.93 33.36 0.30 -5.10 16 19 N -0.72 -19.32 4.52 -53.43 -0.24 -19.56 16 20 C -0.24 -6.95 9.93 -15.06 -0.15 -7.10 16 21 H 0.06 1.84 7.83 -52.49 -0.41 1.43 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 23 N -0.92 -29.15 13.06 55.49 0.72 -28.43 16 24 Si 0.90 23.32 29.55 -169.99 -5.02 18.30 16 25 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 27 H -0.29 -7.62 7.11 56.52 0.40 -7.21 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.08 1.03 8.07 -51.93 -0.42 0.61 16 32 H 0.08 1.50 7.50 -51.93 -0.39 1.11 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.08 1.23 5.95 -51.93 -0.31 0.92 16 35 H 0.07 0.93 8.03 -51.93 -0.42 0.51 16 36 H 0.18 3.05 8.06 -52.49 -0.42 2.63 16 37 H 0.15 1.21 8.06 -52.49 -0.42 0.78 16 38 H 0.15 0.79 8.06 -52.48 -0.42 0.36 16 39 H 0.17 0.90 8.06 -52.48 -0.42 0.47 16 40 H 0.40 11.55 4.80 -40.82 -0.20 11.36 16 41 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 364.34 15.07 5.49 5.49 Total: -1.00 -35.17 364.34 -8.21 -43.38 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -5.08 Total: 8.44 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -1.64 Total: -0.56 kcal Atomic # 7 Polarization: -64.80 SS G_CDS: 0.27 Total: -64.52 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.25 Total: -9.95 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -5.02 Total: 18.30 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -2.48 Total: -0.58 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.17 -8.21 -43.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676398174.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.950 kcal (2) G-P(sol) polarization free energy of solvation -35.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds