Wall clock time and date at job start Tue Mar 31 2020 19:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47361 * 2 1 4 4 C 1.53008 * 109.47053 * 119.99820 * 2 1 3 5 5 N 1.46495 * 109.47007 * 174.99971 * 4 2 1 6 6 C 1.46505 * 120.00055 * 89.99660 * 5 4 2 7 7 C 1.34777 * 120.00254 * 269.99959 * 5 4 2 8 8 O 1.21494 * 119.99746 * 5.02899 * 7 5 4 9 9 C 1.48346 * 120.00126 * 185.03198 * 7 5 4 10 10 C 1.41707 * 126.81120 * 186.10484 * 9 7 5 11 11 C 1.37158 * 103.79918 * 179.86204 * 10 9 7 12 12 C 1.47020 * 126.86109 * 180.10027 * 11 10 9 13 13 C 1.36203 * 125.33551 * 180.02562 * 12 11 10 14 14 C 1.37717 * 114.43940 * 179.78851 * 13 12 11 15 15 C 1.33726 * 115.19399 * 0.49840 * 14 13 12 16 16 S 1.75823 * 109.96236 * 359.72867 * 15 14 13 17 17 O 1.34574 * 106.28098 * 0.39898 * 11 10 9 18 18 N 1.20872 * 111.69430 * 359.73137 * 17 11 10 19 19 N 1.46494 * 109.47226 * 239.99539 * 2 1 3 20 20 C 1.36937 * 120.00003 * 84.99760 * 19 2 1 21 21 H 1.07997 * 120.00008 * 0.02562 * 20 19 2 22 22 C 1.38817 * 120.00448 * 180.02562 * 20 19 2 23 23 N 1.31622 * 119.99289 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00297 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47107 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47082 * 120.00010 * 24 22 20 27 27 H 1.48500 * 109.46550 * 240.00042 * 24 22 20 28 28 H 1.09001 * 109.47245 * 299.99914 * 1 2 3 29 29 H 1.09000 * 109.47522 * 60.00570 * 1 2 3 30 30 H 1.09006 * 109.47580 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46853 * 295.00154 * 4 2 1 32 32 H 1.08994 * 109.46961 * 55.00188 * 4 2 1 33 33 H 1.09000 * 109.46710 * 95.31942 * 6 5 4 34 34 H 1.08998 * 109.47067 * 215.31662 * 6 5 4 35 35 H 1.08998 * 109.46980 * 335.32179 * 6 5 4 36 36 H 1.07999 * 128.09844 * 359.97438 * 10 9 7 37 37 H 1.08001 * 122.77785 * 359.97190 * 13 12 11 38 38 H 1.08003 * 122.40114 * 180.22905 * 14 13 12 39 39 H 1.08006 * 125.02181 * 179.76243 * 15 14 13 40 40 H 0.96999 * 120.00728 * 265.00437 * 19 2 1 41 41 H 0.97002 * 119.99486 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.4999 -0.8264 1.1907 6 6 4.3343 0.2341 1.7613 7 6 4.0757 -1.8987 0.6117 8 8 3.3874 -2.7328 0.0581 9 6 5.5498 -2.0604 0.6505 10 6 6.3122 -3.0574 -0.0076 11 6 7.6054 -2.7657 0.3443 12 6 8.8163 -3.4905 -0.0676 13 6 10.0883 -3.1732 0.3018 14 6 11.0558 -4.0080 -0.2117 15 6 10.6017 -4.9898 -0.9979 16 16 8.8501 -4.8989 -1.1207 17 8 7.5438 -1.6876 1.1474 18 7 6.4057 -1.3125 1.3054 19 7 2.0183 -0.6907 -1.1961 20 6 2.1490 -0.0076 -2.3757 21 1 1.8925 1.0403 -2.4242 22 6 2.6113 -0.6622 -3.5093 23 7 2.9234 -1.9395 -3.4502 24 14 2.7903 0.2698 -5.1182 25 1 2.3763 1.6821 -4.9209 26 1 4.2071 0.2259 -5.5606 27 1 1.9291 -0.3582 -6.1523 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.7515 -0.1583 2.1370 32 1 1.6054 -1.7197 1.2952 33 1 4.6207 -0.0362 2.7776 34 1 5.2297 0.3591 1.1525 35 1 3.7731 1.1684 1.7782 36 1 5.9580 -3.8581 -0.6398 37 1 10.3188 -2.3380 0.9465 38 1 12.1063 -3.8764 0.0016 39 1 11.2195 -5.7297 -1.4851 40 1 2.2490 -1.6318 -1.1526 41 1 3.2460 -2.3970 -4.2424 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676398174.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:13 Heat of formation + Delta-G solvation = 72.117418 kcal Electronic energy + Delta-G solvation = -26493.114033 eV Core-core repulsion = 22696.707321 eV Total energy + Delta-G solvation = -3796.406712 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -46.16013 -40.96457 -38.69120 -37.69563 -36.20848 -35.16055 -34.11144 -33.58779 -30.62055 -29.70465 -28.37163 -27.63344 -25.82724 -25.61809 -24.79182 -23.70095 -21.84043 -21.07767 -19.82174 -19.40352 -19.09202 -18.97028 -18.14467 -17.41722 -17.10503 -16.81855 -16.41419 -16.23191 -15.59009 -15.20826 -14.95641 -14.68713 -14.42696 -14.23137 -14.18578 -13.84440 -13.74996 -13.61412 -13.57013 -13.20524 -13.06758 -12.88492 -12.79016 -12.52427 -12.37063 -12.16533 -11.88765 -11.77877 -11.67397 -11.56371 -11.37480 -11.24397 -10.95748 -9.64090 -9.55731 -9.32716 -8.91882 -7.85419 -5.14785 -0.72241 0.11146 0.29421 0.84343 0.96782 1.40577 1.42303 1.51750 1.72084 1.85236 1.92977 2.16516 2.55741 2.74088 3.24766 3.43558 3.73301 3.84163 3.99996 4.06987 4.13695 4.21456 4.23892 4.46097 4.49458 4.56016 4.61858 4.63881 4.67849 4.71425 4.85145 4.90829 5.06389 5.08587 5.24357 5.25499 5.41744 5.44988 5.52358 5.64915 6.22364 6.34411 6.77510 7.06134 7.41705 8.26596 8.50860 9.36182 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011635 B = 0.003717 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.030025 B = 7530.762133 C = 9104.851640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.143 3.857 3 H 0.047 0.953 4 C 0.114 3.886 5 N -0.592 5.592 6 C 0.083 3.917 7 C 0.587 3.413 8 O -0.540 6.540 9 C -0.022 4.022 10 C -0.190 4.190 11 C 0.058 3.942 12 C -0.179 4.179 13 C -0.082 4.082 14 C -0.142 4.142 15 C -0.187 4.187 16 S 0.143 5.857 17 O 0.138 5.862 18 N -0.324 5.324 19 N -0.741 5.741 20 C -0.236 4.236 21 H 0.070 0.930 22 C -0.078 4.078 23 N -0.959 5.959 24 Si 0.964 3.036 25 H -0.265 1.265 26 H -0.297 1.297 27 H -0.294 1.294 28 H 0.083 0.917 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.129 0.871 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.094 0.906 36 H 0.171 0.829 37 H 0.167 0.833 38 H 0.181 0.819 39 H 0.202 0.798 40 H 0.386 0.614 41 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.885 -2.103 13.520 21.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.033 3.967 3 H 0.065 0.935 4 C -0.008 4.008 5 N -0.324 5.324 6 C -0.059 4.059 7 C 0.373 3.627 8 O -0.415 6.415 9 C -0.179 4.179 10 C -0.213 4.213 11 C -0.006 4.006 12 C -0.296 4.296 13 C -0.115 4.115 14 C -0.171 4.171 15 C -0.323 4.323 16 S 0.408 5.592 17 O 0.061 5.939 18 N -0.025 5.025 19 N -0.386 5.386 20 C -0.369 4.369 21 H 0.088 0.912 22 C -0.271 4.271 23 N -0.610 5.610 24 Si 0.794 3.206 25 H -0.190 1.190 26 H -0.225 1.225 27 H -0.222 1.222 28 H 0.101 0.899 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.147 0.853 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.113 0.887 36 H 0.189 0.811 37 H 0.185 0.815 38 H 0.199 0.801 39 H 0.219 0.781 40 H 0.224 0.776 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 15.169 -2.179 13.164 20.203 hybrid contribution 0.675 0.148 -1.202 1.386 sum 15.844 -2.031 11.962 19.957 Atomic orbital electron populations 1.22235 0.96963 1.00747 1.01329 1.20999 0.93479 0.95484 0.86714 0.93491 1.22008 0.77781 1.01984 0.99022 1.47574 1.07820 1.20232 1.56784 1.22047 0.94845 0.90168 0.98802 1.17148 0.84452 0.82638 0.78457 1.90753 1.63043 1.44751 1.42982 1.23214 0.96194 0.96894 1.01605 1.22626 0.91002 1.02782 1.04928 1.21371 0.93357 0.90057 0.95837 1.21851 0.92926 1.04101 1.10755 1.21121 0.89371 1.01144 0.99889 1.20368 1.02368 0.95066 0.99325 1.26432 0.95995 1.04996 1.04920 1.84762 1.05967 1.23621 1.44850 1.84838 1.23131 1.35651 1.50261 1.74245 0.89494 1.19107 1.19672 1.43087 1.78071 1.11628 1.05852 1.19631 1.34653 0.93865 0.88738 0.91191 1.25536 1.03513 0.96823 1.01186 1.69962 1.52475 1.10058 1.28509 0.85197 0.76594 0.78295 0.80498 1.18979 1.22478 1.22157 0.89861 0.94500 0.94426 0.85340 0.91646 0.90452 0.92137 0.88706 0.81135 0.81518 0.80145 0.78075 0.77612 0.94652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.48 9.49 71.98 0.68 -4.80 16 2 C 0.14 5.86 3.20 44.99 0.14 6.00 16 3 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 4 C 0.11 3.91 5.11 86.38 0.44 4.35 16 5 N -0.59 -21.76 2.77 -849.61 -2.36 -24.12 16 6 C 0.08 2.36 9.34 127.77 1.19 3.55 16 7 C 0.59 25.97 7.11 86.93 0.62 26.59 16 8 O -0.54 -28.46 14.01 -3.70 -0.05 -28.51 16 9 C -0.02 -0.88 6.78 42.79 0.29 -0.59 16 10 C -0.19 -6.95 10.78 22.87 0.25 -6.70 16 11 C 0.06 1.73 7.28 24.32 0.18 1.91 16 12 C -0.18 -4.18 6.45 24.10 0.16 -4.02 16 13 C -0.08 -1.37 10.17 21.67 0.22 -1.15 16 14 C -0.14 -1.72 10.15 21.12 0.21 -1.51 16 15 C -0.19 -2.40 11.21 66.79 0.75 -1.65 16 16 S 0.14 2.96 23.11 -56.49 -1.31 1.65 16 17 O 0.14 4.03 11.21 66.52 0.75 4.77 16 18 N -0.32 -10.72 8.93 -48.86 -0.44 -11.16 16 19 N -0.74 -40.63 4.52 -322.95 -1.46 -42.09 16 20 C -0.24 -14.05 9.93 84.03 0.83 -13.21 16 21 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 22 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 23 N -0.96 -63.60 13.06 21.65 0.28 -63.32 16 24 Si 0.96 49.12 29.55 68.60 2.03 51.15 16 25 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 26 H -0.30 -15.15 7.11 99.48 0.71 -14.45 16 27 H -0.29 -14.94 7.11 99.48 0.71 -14.23 16 28 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.13 3.02 8.07 -2.39 -0.02 3.00 16 32 H 0.07 2.46 7.50 -2.39 -0.02 2.44 16 33 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.06 1.93 5.95 -2.39 -0.01 1.91 16 35 H 0.09 2.21 8.03 -2.39 -0.02 2.19 16 36 H 0.17 6.48 8.06 -2.91 -0.02 6.46 16 37 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 38 H 0.18 0.98 8.06 -2.91 -0.02 0.95 16 39 H 0.20 1.27 8.06 -2.91 -0.02 1.24 16 40 H 0.39 23.42 4.80 -92.71 -0.45 22.98 16 41 H 0.24 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -81.40 364.34 4.50 -76.90 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: 0.62 Total: 30.29 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: 6.43 Total: 4.42 kcal Atomic # 7 Polarization: -136.71 SS G_CDS: -3.97 Total: -140.69 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: 0.69 Total: -23.74 kcal Atomic # 14 Polarization: 49.12 SS G_CDS: 2.03 Total: 51.15 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -1.31 Total: 1.65 kcal Total: -81.40 4.50 -76.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676398174.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.021 kcal (2) G-P(sol) polarization free energy of solvation -81.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds